Wall clock time and date at job start Tue Mar 31 2020 00:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46820 * 2 1 4 4 C 1.52998 * 109.47110 * 240.00348 * 2 1 3 5 5 C 1.52996 * 109.47227 * 120.00272 * 2 1 3 6 6 N 1.46897 * 109.47426 * 77.76023 * 5 2 1 7 7 C 1.46905 * 110.99743 * 316.59315 * 6 5 2 8 8 C 1.50694 * 109.47016 * 293.93004 * 7 6 5 9 9 H 1.08008 * 120.00312 * 2.13894 * 8 7 6 10 10 C 1.37876 * 119.99996 * 182.13899 * 8 7 6 11 11 N 1.31517 * 120.00031 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00251 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46867 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46878 * 119.99724 * 12 10 8 15 15 H 1.48503 * 109.46923 * 240.00313 * 12 10 8 16 16 C 1.46897 * 110.99901 * 80.54815 * 6 5 2 17 17 C 1.50694 * 109.47400 * 66.34567 * 16 6 5 18 18 C 1.38828 * 120.35832 * 263.79303 * 17 16 6 19 19 C 1.38370 * 118.48872 * 180.02562 * 18 17 16 20 20 C 1.38924 * 119.11389 * 359.97438 * 19 18 17 21 21 O 1.35670 * 119.68909 * 180.02562 * 20 19 18 22 22 N 1.32252 * 120.62362 * 0.02562 * 20 19 18 23 23 C 1.31963 * 121.65250 * 359.97438 * 22 20 19 24 24 H 1.09004 * 109.46914 * 262.21551 * 1 2 3 25 25 H 1.08996 * 109.47560 * 22.21762 * 1 2 3 26 26 H 1.08999 * 109.47480 * 142.21853 * 1 2 3 27 27 H 1.08997 * 109.46832 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47131 * 300.00109 * 3 2 1 29 29 H 1.09001 * 109.46847 * 60.00554 * 3 2 1 30 30 H 1.09008 * 109.47100 * 303.26874 * 4 2 1 31 31 H 1.09002 * 109.47321 * 63.26087 * 4 2 1 32 32 H 1.08999 * 109.47356 * 183.26632 * 4 2 1 33 33 H 1.09001 * 109.46836 * 317.75902 * 5 2 1 34 34 H 1.09005 * 109.47087 * 197.75896 * 5 2 1 35 35 H 1.08995 * 109.46974 * 53.93270 * 7 6 5 36 36 H 1.09002 * 109.46643 * 173.92972 * 7 6 5 37 37 H 0.96996 * 120.00196 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.47161 * 306.34269 * 16 6 5 39 39 H 1.09002 * 109.47360 * 186.35080 * 16 6 5 40 40 H 1.08002 * 120.75176 * 0.04674 * 18 17 16 41 41 H 1.07998 * 120.44596 * 179.97438 * 19 18 17 42 42 H 0.96698 * 113.99741 * 269.97558 * 21 20 19 43 43 H 1.07995 * 119.58110 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.9264 -2.1732 1.0570 7 6 0.6379 -2.5240 0.4450 8 6 -0.4784 -2.2014 1.4046 9 1 -0.2559 -1.7463 2.3585 10 6 -1.7837 -2.4874 1.0649 11 7 -2.0546 -3.0421 -0.0964 12 14 -3.1675 -2.0869 2.2542 13 1 -2.6025 -1.4717 3.4819 14 1 -4.1109 -1.1357 1.6135 15 1 -3.8891 -3.3345 2.6121 16 6 3.0464 -2.6876 0.2576 17 6 4.3293 -2.5343 1.0332 18 6 5.1501 -1.4349 0.8214 19 6 6.3193 -1.3332 1.5544 20 6 6.6303 -2.3285 2.4724 21 8 7.7735 -2.2403 3.1976 22 7 5.8226 -3.3612 2.6459 23 6 4.7010 -3.4857 1.9618 24 1 -0.3633 -0.1392 1.0182 25 1 -0.3634 0.9513 -0.3886 26 1 -0.3634 -0.8122 -0.6296 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6296 -1.7306 -1.2791 31 1 1.7252 -0.1747 -2.1383 32 1 3.1284 -0.7722 -1.2205 33 1 1.4438 -0.4211 2.1109 34 1 3.0839 -0.4580 1.4200 35 1 0.5042 -1.9522 -0.4733 36 1 0.6230 -3.5894 0.2151 37 1 -2.9728 -3.2436 -0.3352 38 1 3.1158 -2.1262 -0.6741 39 1 2.8800 -3.7416 0.0350 40 1 4.8819 -0.6760 0.1012 41 1 6.9813 -0.4914 1.4148 42 1 8.5379 -2.6596 2.7794 43 1 4.0658 -4.3427 2.1307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602464563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:57 Heat of formation + Delta-G solvation = 18.012170 kcal Electronic energy + Delta-G solvation = -22931.922193 eV Core-core repulsion = 19785.492101 eV Total energy + Delta-G solvation = -3146.430092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68321 -40.57908 -38.02712 -35.22680 -34.87535 -33.37244 -31.80691 -29.58237 -29.03785 -27.38360 -26.90224 -25.65249 -24.55145 -23.19452 -21.71569 -19.84712 -19.61898 -18.39005 -17.78406 -17.00351 -16.91512 -16.44722 -16.22737 -16.00435 -15.21645 -15.14494 -14.78398 -14.45826 -14.19763 -14.04365 -13.81361 -13.17656 -13.08146 -12.92230 -12.80308 -12.72903 -12.54119 -12.40473 -12.32818 -12.27936 -11.99128 -11.83767 -11.45516 -11.25129 -11.05984 -10.96967 -10.71414 -10.40570 -10.31850 -9.69924 -8.50756 -8.06264 -6.04199 0.07974 0.30851 1.39143 1.43538 1.52467 2.45936 2.62480 2.85079 3.26327 3.58718 3.78977 3.93200 4.01480 4.07142 4.13511 4.14628 4.26394 4.44289 4.58855 4.73655 4.76200 4.80927 4.86473 4.88350 4.99824 5.03189 5.06926 5.15782 5.20741 5.26187 5.30072 5.38008 5.46429 5.52203 5.59102 5.66721 5.73049 5.84470 6.06460 6.25776 6.54657 6.69383 6.81843 7.00498 7.02540 7.55187 9.02854 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.005143 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.725180 B = 5442.618607 C = 6057.756240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.159 4.159 5 C 0.080 3.920 6 N -0.541 5.541 7 C 0.171 3.829 8 C -0.483 4.483 9 H 0.047 0.953 10 C 0.014 3.986 11 N -0.927 5.927 12 Si 0.937 3.063 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.287 1.287 16 C 0.060 3.940 17 C -0.124 4.124 18 C -0.055 4.055 19 C -0.176 4.176 20 C 0.287 3.713 21 O -0.493 6.493 22 N -0.534 5.534 23 C 0.126 3.874 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.047 0.953 36 H -0.011 1.011 37 H 0.258 0.742 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.417 0.583 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.468 6.445 -2.646 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C -0.187 4.187 4 C -0.215 4.215 5 C -0.048 4.048 6 N -0.264 5.264 7 C 0.046 3.954 8 C -0.521 4.521 9 H 0.066 0.934 10 C -0.183 4.183 11 N -0.569 5.569 12 Si 0.764 3.236 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.213 1.213 16 C -0.067 4.067 17 C -0.127 4.127 18 C -0.081 4.081 19 C -0.197 4.197 20 C 0.108 3.892 21 O -0.303 6.303 22 N -0.253 5.253 23 C -0.031 4.031 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.007 0.993 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.177 0.823 41 H 0.186 0.814 42 H 0.278 0.722 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 16.283 5.828 -1.248 17.339 hybrid contribution -1.331 0.339 -0.788 1.584 sum 14.951 6.167 -2.037 16.301 Atomic orbital electron populations 1.22400 0.94922 0.98690 1.03293 1.21079 0.95786 0.96554 0.95887 1.21813 1.01161 0.94151 1.01532 1.22642 1.00793 1.00904 0.97181 1.22137 0.99629 0.86963 0.96080 1.62190 1.02314 1.12624 1.49256 1.20409 0.85031 0.94435 0.95486 1.21192 0.91233 1.37516 1.02199 0.93445 1.25415 1.00394 0.96136 0.96386 1.70022 1.19610 1.44887 1.22406 0.85817 0.80263 0.77648 0.79854 1.19606 1.20782 1.21293 1.21758 0.87552 1.01282 0.96105 1.20890 0.97071 0.95914 0.98823 1.21699 0.92179 0.96300 0.97890 1.22276 0.99730 1.01386 0.96311 1.19466 0.88890 0.90654 0.90240 1.84739 1.17656 1.79340 1.48587 1.67138 1.06504 1.25744 1.25928 1.22424 0.91157 0.98855 0.90651 0.92244 0.95412 0.92943 0.91270 0.92510 0.93156 0.92170 0.92767 0.90420 0.93727 0.90886 0.93623 0.99316 0.93249 0.89231 0.91565 0.82309 0.81447 0.72229 0.82943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 7.23 71.98 0.52 -4.93 16 2 C -0.09 -2.92 0.77 -52.18 -0.04 -2.96 16 3 C -0.13 -3.19 8.17 71.98 0.59 -2.61 16 4 C -0.16 -4.64 6.33 71.98 0.46 -4.19 16 5 C 0.08 2.79 4.59 86.30 0.40 3.19 16 6 N -0.54 -21.11 4.69 -905.40 -4.25 -25.35 16 7 C 0.17 8.13 3.65 85.55 0.31 8.44 16 8 C -0.48 -25.39 5.23 25.60 0.13 -25.26 16 9 H 0.05 2.58 7.02 -2.91 -0.02 2.56 16 10 C 0.01 0.77 5.21 84.65 0.44 1.21 16 11 N -0.93 -52.74 13.29 21.45 0.28 -52.45 16 12 Si 0.94 43.73 29.54 68.60 2.03 45.75 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 15 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 16 C 0.06 1.89 4.54 85.56 0.39 2.28 16 17 C -0.12 -3.44 4.80 -19.77 -0.09 -3.54 16 18 C -0.05 -1.19 8.18 22.44 0.18 -1.01 16 19 C -0.18 -3.59 10.04 22.47 0.23 -3.37 16 20 C 0.29 7.25 7.75 84.79 0.66 7.91 16 21 O -0.49 -10.41 13.56 -89.87 -1.22 -11.62 16 22 N -0.53 -16.35 10.39 -308.95 -3.21 -19.56 16 23 C 0.13 3.81 10.87 84.63 0.92 4.73 16 24 H 0.06 2.68 5.09 -2.38 -0.01 2.67 16 25 H 0.03 0.99 7.72 -2.39 -0.02 0.98 16 26 H 0.05 2.44 5.15 -2.39 -0.01 2.43 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 2.11 3.81 -2.38 -0.01 2.11 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.80 5.75 -2.39 -0.01 1.78 16 33 H 0.04 1.79 6.88 -2.39 -0.02 1.77 16 34 H 0.07 2.18 5.37 -2.38 -0.01 2.17 16 35 H 0.05 2.19 2.09 -2.39 -0.01 2.18 16 36 H -0.01 -0.61 7.93 -2.39 -0.02 -0.63 16 37 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 38 H 0.09 2.51 3.14 -2.39 -0.01 2.51 16 39 H 0.07 2.19 7.91 -2.39 -0.02 2.17 16 40 H 0.16 2.68 7.22 -2.91 -0.02 2.66 16 41 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.42 4.20 9.06 -74.06 -0.67 3.52 16 43 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -64.55 321.27 -0.91 -65.46 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.37 Total: 17.89 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 5.09 Total: -20.10 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -7.17 Total: -97.37 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.22 Total: -11.62 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.55 -0.91 -65.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.469 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds