Wall clock time and date at job start Tue Mar 31 2020 00:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47110 * 2 1 4 4 C 1.34507 * 125.78834 * 89.71448 * 3 2 1 5 5 C 1.41386 * 106.84010 * 180.26118 * 4 3 2 6 6 C 1.34511 * 106.84141 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.79252 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46809 * 90.00358 * 7 6 5 9 9 C 1.46956 * 110.99704 * 293.80130 * 8 7 6 10 10 C 1.53054 * 109.36508 * 176.81048 * 9 8 7 11 11 N 1.46964 * 109.36345 * 58.40154 * 10 9 8 12 12 C 1.46891 * 110.99950 * 176.81336 * 11 10 9 13 13 C 1.50700 * 109.47303 * 293.79712 * 12 11 10 14 14 H 1.08000 * 119.99953 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00223 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99878 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00130 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47342 * 89.99604 * 17 15 13 19 19 H 1.48508 * 109.47342 * 209.99612 * 17 15 13 20 20 H 1.48496 * 109.47198 * 329.99679 * 17 15 13 21 21 C 1.46956 * 110.87615 * 300.68329 * 11 10 9 22 22 C 1.46954 * 111.00198 * 170.00318 * 8 7 6 23 23 O 1.34304 * 125.78797 * 270.02626 * 3 2 1 24 24 H 1.08995 * 109.47503 * 59.99951 * 1 2 3 25 25 H 1.09000 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46971 * 300.00144 * 1 2 3 27 27 H 1.09000 * 109.47263 * 240.00068 * 2 1 3 28 28 H 1.09004 * 109.47234 * 120.00081 * 2 1 3 29 29 H 1.08004 * 126.58507 * 0.26980 * 4 3 2 30 30 H 1.07999 * 126.57835 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.47617 * 209.99888 * 7 6 5 32 32 H 1.09004 * 109.47047 * 330.00557 * 7 6 5 33 33 H 1.08998 * 109.49133 * 296.77610 * 9 8 7 34 34 H 1.09004 * 109.49139 * 56.84523 * 9 8 7 35 35 H 1.08999 * 109.48961 * 298.43689 * 10 9 8 36 36 H 1.08999 * 109.49293 * 178.36252 * 10 9 8 37 37 H 1.09004 * 109.47612 * 53.80391 * 12 11 10 38 38 H 1.09009 * 109.47109 * 173.79872 * 12 11 10 39 39 H 0.96997 * 120.00144 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.48990 * 299.34484 * 21 11 10 41 41 H 1.09004 * 109.48722 * 179.28665 * 21 11 10 42 42 H 1.09004 * 109.48654 * 303.15276 * 22 8 7 43 43 H 1.08999 * 109.48742 * 63.21924 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2894 2.1643 1.0911 5 6 2.7315 3.4263 0.6320 6 6 2.7176 3.3788 -0.7122 7 6 3.1111 4.5009 -1.6379 8 7 4.5466 4.4090 -1.9362 9 6 5.3515 4.6551 -0.7315 10 6 6.8339 4.4723 -1.0656 11 7 7.2082 5.3981 -2.1438 12 6 8.6436 5.3061 -2.4420 13 6 9.4352 5.8004 -1.2587 14 1 8.9231 6.1477 -0.3735 15 6 10.8131 5.8093 -1.3061 16 7 11.4367 5.3859 -2.3838 17 14 11.7942 6.4213 0.1609 18 1 12.0805 5.2854 1.0736 19 1 13.0726 7.0121 -0.3102 20 1 11.0095 7.4529 0.8856 21 6 6.4032 5.1519 -3.3484 22 6 4.9209 5.3347 -3.0143 23 8 2.2937 2.1615 -1.0895 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.1794 1.8563 2.1204 30 1 3.0242 4.2672 1.2433 31 1 2.5420 4.4243 -2.5644 32 1 2.8999 5.4574 -1.1598 33 1 5.1805 5.6731 -0.3816 34 1 5.0647 3.9492 0.0480 35 1 7.0099 3.4465 -1.3896 36 1 7.4348 4.6827 -0.1808 37 1 8.9065 4.2683 -2.6471 38 1 8.8735 5.9183 -3.3142 39 1 12.4061 5.3924 -2.4174 40 1 6.5743 4.1339 -3.6984 41 1 6.6900 5.8578 -4.1279 42 1 4.3201 5.1243 -3.8992 43 1 4.7449 6.3604 -2.6903 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602747561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:33 Heat of formation + Delta-G solvation = 19.361105 kcal Electronic energy + Delta-G solvation = -21640.425810 eV Core-core repulsion = 18494.054213 eV Total energy + Delta-G solvation = -3146.371598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.59754 -38.73675 -35.38404 -34.30930 -32.91841 -32.38822 -30.47718 -29.98383 -27.73022 -25.90219 -24.11787 -23.30103 -22.49386 -21.63943 -21.32276 -20.05478 -19.15775 -16.74285 -16.40297 -16.24325 -15.57063 -14.95493 -14.81784 -14.55311 -14.39267 -14.18348 -13.81879 -13.55722 -13.28688 -13.17813 -12.79990 -12.61377 -12.47870 -12.00822 -11.91202 -11.71507 -11.66441 -11.27378 -11.14485 -10.84845 -10.72263 -10.63258 -10.39436 -10.27382 -9.84665 -9.70207 -9.16482 -8.44680 -8.38734 -8.11949 -7.21459 -6.01287 -4.02679 1.68379 2.57633 2.86568 3.32582 3.38622 3.42901 4.14486 4.43550 4.47251 4.72301 4.92012 4.94682 4.98413 5.03744 5.13054 5.24052 5.30753 5.34359 5.43837 5.51810 5.55687 5.57171 5.75846 5.79990 5.83326 5.85548 5.91320 5.98037 6.09176 6.13401 6.20054 6.43880 6.52375 6.60393 6.71390 7.12010 7.15990 7.23483 7.36410 7.39246 7.81422 8.10475 8.22342 8.56845 9.04823 9.61453 11.09670 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.003390 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.829738 B = 8257.096318 C = 8745.728762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C -0.016 4.016 4 C -0.209 4.209 5 C -0.206 4.206 6 C 0.007 3.993 7 C 0.132 3.868 8 N -0.537 5.537 9 C 0.054 3.946 10 C 0.069 3.931 11 N -0.539 5.539 12 C 0.193 3.807 13 C -0.507 4.507 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.056 3.944 22 C 0.062 3.938 23 O -0.167 6.167 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.087 0.913 37 H -0.009 1.009 38 H 0.030 0.970 39 H 0.261 0.739 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.412 -6.913 3.700 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.066 4.066 4 C -0.228 4.228 5 C -0.226 4.226 6 C -0.044 4.044 7 C 0.004 3.996 8 N -0.263 5.263 9 C -0.074 4.074 10 C -0.060 4.060 11 N -0.264 5.264 12 C 0.068 3.932 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.073 4.073 22 C -0.065 4.065 23 O -0.063 6.063 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.009 0.991 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.248 -7.018 3.305 22.619 hybrid contribution 0.778 0.361 0.960 1.287 sum -20.470 -6.656 4.264 21.943 Atomic orbital electron populations 1.21788 0.94130 1.02150 1.02574 1.20057 0.96155 0.87726 1.04066 1.22377 1.04841 0.95072 0.84315 1.21499 1.07552 0.94533 0.99195 1.21566 1.07652 0.99481 0.93910 1.22218 1.02590 0.85452 0.94146 1.20435 0.90366 0.91360 0.97437 1.62138 1.01870 1.53140 1.09114 1.22356 0.94117 0.99532 0.91358 1.21974 0.92767 0.94303 0.96954 1.62298 1.07663 1.50678 1.05783 1.19701 0.80544 0.95491 0.97420 1.21153 0.90629 1.41914 1.00848 0.91939 1.24994 0.97839 0.95616 0.96200 1.69961 1.08677 1.47516 1.27683 0.86505 0.79396 0.78990 0.82573 1.20731 1.21260 1.19792 1.22060 0.91567 0.99501 0.94137 1.22178 0.96998 0.93916 0.93425 1.83961 1.65159 1.22248 1.34916 0.92325 0.91753 0.92253 0.90107 0.89001 0.83795 0.83691 0.89347 0.91657 0.94211 0.90735 0.95376 0.89525 0.99075 0.95201 0.92933 0.95085 0.90830 0.90975 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.04 -0.36 6.47 -27.88 -0.18 -0.54 16 3 C -0.02 -0.18 6.57 -35.63 -0.23 -0.42 16 4 C -0.21 -2.45 10.81 -39.70 -0.43 -2.88 16 5 C -0.21 -2.61 9.32 -39.70 -0.37 -2.98 16 6 C 0.01 0.09 6.23 -35.63 -0.22 -0.13 16 7 C 0.13 1.66 5.50 -4.97 -0.03 1.63 16 8 N -0.54 -8.30 4.70 -235.91 -1.11 -9.41 16 9 C 0.05 0.90 5.37 -3.77 -0.02 0.88 16 10 C 0.07 1.40 5.43 -3.76 -0.02 1.38 16 11 N -0.54 -11.95 4.70 -235.91 -1.11 -13.06 16 12 C 0.19 5.15 4.72 -4.98 -0.02 5.12 16 13 C -0.51 -14.38 8.47 -34.44 -0.29 -14.68 16 14 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 22 C 0.06 0.95 5.61 -3.77 -0.02 0.92 16 23 O -0.17 -2.36 10.65 5.70 0.06 -2.30 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.09 0.99 8.03 -51.93 -0.42 0.58 16 32 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.18 6.14 -51.93 -0.32 0.86 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16 37 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 38 H 0.03 0.84 8.03 -51.92 -0.42 0.42 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 42 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -31.47 345.86 -10.17 -41.64 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.35 Total: -2.74 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.59 Total: -9.84 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -1.48 Total: -48.75 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: 0.06 Total: -2.30 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.47 -10.17 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.997 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds