Wall clock time and date at job start Tue Mar 31 2020 00:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47110 * 2 1 4 4 C 1.34507 * 125.78834 * 89.71448 * 3 2 1 5 5 C 1.41386 * 106.84010 * 180.26118 * 4 3 2 6 6 C 1.34511 * 106.84141 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.79252 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46809 * 90.00358 * 7 6 5 9 9 C 1.46956 * 110.99704 * 293.80130 * 8 7 6 10 10 C 1.53054 * 109.36508 * 176.81048 * 9 8 7 11 11 N 1.46964 * 109.36345 * 58.40154 * 10 9 8 12 12 C 1.46891 * 110.99950 * 176.81336 * 11 10 9 13 13 C 1.50700 * 109.47303 * 293.79712 * 12 11 10 14 14 H 1.08000 * 119.99953 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00223 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99878 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00130 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47342 * 89.99604 * 17 15 13 19 19 H 1.48508 * 109.47342 * 209.99612 * 17 15 13 20 20 H 1.48496 * 109.47198 * 329.99679 * 17 15 13 21 21 C 1.46956 * 110.87615 * 300.68329 * 11 10 9 22 22 C 1.46954 * 111.00198 * 170.00318 * 8 7 6 23 23 O 1.34304 * 125.78797 * 270.02626 * 3 2 1 24 24 H 1.08995 * 109.47503 * 59.99951 * 1 2 3 25 25 H 1.09000 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46971 * 300.00144 * 1 2 3 27 27 H 1.09000 * 109.47263 * 240.00068 * 2 1 3 28 28 H 1.09004 * 109.47234 * 120.00081 * 2 1 3 29 29 H 1.08004 * 126.58507 * 0.26980 * 4 3 2 30 30 H 1.07999 * 126.57835 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.47617 * 209.99888 * 7 6 5 32 32 H 1.09004 * 109.47047 * 330.00557 * 7 6 5 33 33 H 1.08998 * 109.49133 * 296.77610 * 9 8 7 34 34 H 1.09004 * 109.49139 * 56.84523 * 9 8 7 35 35 H 1.08999 * 109.48961 * 298.43689 * 10 9 8 36 36 H 1.08999 * 109.49293 * 178.36252 * 10 9 8 37 37 H 1.09004 * 109.47612 * 53.80391 * 12 11 10 38 38 H 1.09009 * 109.47109 * 173.79872 * 12 11 10 39 39 H 0.96997 * 120.00144 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.48990 * 299.34484 * 21 11 10 41 41 H 1.09004 * 109.48722 * 179.28665 * 21 11 10 42 42 H 1.09004 * 109.48654 * 303.15276 * 22 8 7 43 43 H 1.08999 * 109.48742 * 63.21924 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2894 2.1643 1.0911 5 6 2.7315 3.4263 0.6320 6 6 2.7176 3.3788 -0.7122 7 6 3.1111 4.5009 -1.6379 8 7 4.5466 4.4090 -1.9362 9 6 5.3515 4.6551 -0.7315 10 6 6.8339 4.4723 -1.0656 11 7 7.2082 5.3981 -2.1438 12 6 8.6436 5.3061 -2.4420 13 6 9.4352 5.8004 -1.2587 14 1 8.9231 6.1477 -0.3735 15 6 10.8131 5.8093 -1.3061 16 7 11.4367 5.3859 -2.3838 17 14 11.7942 6.4213 0.1609 18 1 12.0805 5.2854 1.0736 19 1 13.0726 7.0121 -0.3102 20 1 11.0095 7.4529 0.8856 21 6 6.4032 5.1519 -3.3484 22 6 4.9209 5.3347 -3.0143 23 8 2.2937 2.1615 -1.0895 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.1794 1.8563 2.1204 30 1 3.0242 4.2672 1.2433 31 1 2.5420 4.4243 -2.5644 32 1 2.8999 5.4574 -1.1598 33 1 5.1805 5.6731 -0.3816 34 1 5.0647 3.9492 0.0480 35 1 7.0099 3.4465 -1.3896 36 1 7.4348 4.6827 -0.1808 37 1 8.9065 4.2683 -2.6471 38 1 8.8735 5.9183 -3.3142 39 1 12.4061 5.3924 -2.4174 40 1 6.5743 4.1339 -3.6984 41 1 6.6900 5.8578 -4.1279 42 1 4.3201 5.1243 -3.8992 43 1 4.7449 6.3604 -2.6903 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602747561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:33 Heat of formation + Delta-G solvation = -1.319540 kcal Electronic energy + Delta-G solvation = -21641.322590 eV Core-core repulsion = 18494.054213 eV Total energy + Delta-G solvation = -3147.268378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.52854 -40.17208 -36.91548 -35.09312 -34.64266 -33.68175 -31.88850 -31.25364 -29.28751 -27.32797 -25.45900 -24.63907 -23.64706 -23.07249 -22.54685 -20.96746 -20.65857 -18.50776 -17.75940 -17.39644 -16.91210 -16.34528 -16.05924 -15.86624 -15.75103 -15.36991 -15.18286 -14.97809 -14.72110 -14.12170 -13.95733 -13.72391 -13.63735 -13.35187 -13.23093 -13.07516 -12.82855 -12.67536 -12.42428 -12.34339 -12.27269 -12.14076 -11.95705 -11.85383 -11.51580 -11.20637 -10.77281 -10.63329 -9.48011 -9.18555 -9.05419 -8.21997 -6.32667 0.74673 1.40343 1.41980 1.53718 1.66186 2.00048 2.39382 2.97791 3.10091 3.27350 3.64410 3.93404 3.98141 4.10680 4.14788 4.17808 4.24568 4.35731 4.38143 4.43598 4.49198 4.54781 4.62839 4.65388 4.83370 4.88873 4.93516 4.94265 4.99668 5.01610 5.03309 5.16288 5.19135 5.21982 5.25406 5.35481 5.62017 5.65742 5.93413 5.98177 6.04037 6.29527 6.30380 6.59509 6.82959 7.37155 8.89496 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.003390 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.829738 B = 8257.096318 C = 8745.728762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C -0.022 4.022 4 C -0.221 4.221 5 C -0.210 4.210 6 C -0.016 4.016 7 C 0.136 3.864 8 N -0.552 5.552 9 C 0.071 3.929 10 C 0.071 3.929 11 N -0.542 5.542 12 C 0.208 3.792 13 C -0.524 4.524 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.053 3.947 22 C 0.072 3.928 23 O -0.188 6.188 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.164 0.836 30 H 0.156 0.844 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.008 0.992 36 H 0.069 0.931 37 H -0.043 1.043 38 H 0.006 0.994 39 H 0.265 0.735 40 H 0.017 0.983 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.067 -6.731 5.123 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.072 4.072 4 C -0.240 4.240 5 C -0.230 4.230 6 C -0.066 4.066 7 C 0.009 3.991 8 N -0.277 5.277 9 C -0.057 4.057 10 C -0.057 4.057 11 N -0.267 5.267 12 C 0.082 3.918 13 C -0.562 4.562 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.076 4.076 22 C -0.055 4.055 23 O -0.085 6.085 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.182 0.818 30 H 0.174 0.826 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.026 0.974 36 H 0.087 0.913 37 H -0.026 1.026 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.939 -6.836 4.728 24.398 hybrid contribution 1.246 0.230 0.483 1.356 sum -21.692 -6.605 5.210 23.267 Atomic orbital electron populations 1.21760 0.92963 1.03322 1.02131 1.20254 0.97093 0.85838 1.04964 1.23097 1.04028 0.96198 0.83909 1.21826 1.07578 0.94311 1.00258 1.21837 1.07072 1.00187 0.93916 1.22423 1.03813 0.85723 0.94686 1.20492 0.88162 0.91946 0.98464 1.62064 1.03655 1.53493 1.08520 1.22112 0.91310 1.00094 0.92212 1.21941 0.95596 0.92680 0.95522 1.62247 1.05459 1.51328 1.07689 1.19357 0.83582 0.92677 0.96171 1.21445 0.91365 1.42108 1.01281 0.91829 1.25957 0.99000 0.95527 0.99301 1.70094 1.09173 1.48432 1.29911 0.85348 0.77672 0.78711 0.78689 1.19822 1.20632 1.18720 1.22192 0.93773 0.98763 0.92874 1.22109 0.94314 0.94361 0.94705 1.83948 1.65648 1.22776 1.36099 0.93357 0.89781 0.92084 0.90103 0.87183 0.81805 0.82648 0.87745 0.89854 0.93602 0.89840 0.97392 0.91265 1.02565 0.97572 0.92634 0.96478 0.90491 0.87867 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.04 -0.66 6.47 29.85 0.19 -0.47 16 3 C -0.02 -0.50 6.57 24.83 0.16 -0.33 16 4 C -0.22 -4.81 10.81 22.19 0.24 -4.57 16 5 C -0.21 -4.96 9.32 22.19 0.21 -4.75 16 6 C -0.02 -0.41 6.23 24.83 0.15 -0.26 16 7 C 0.14 3.11 5.50 85.56 0.47 3.58 16 8 N -0.55 -16.14 4.70 -900.29 -4.23 -20.37 16 9 C 0.07 2.28 5.37 86.31 0.46 2.74 16 10 C 0.07 2.97 5.43 86.31 0.47 3.44 16 11 N -0.54 -24.60 4.70 -900.27 -4.23 -28.83 16 12 C 0.21 11.59 4.72 85.56 0.40 11.99 16 13 C -0.52 -30.42 8.47 25.60 0.22 -30.20 16 14 H 0.06 3.60 7.13 -2.91 -0.02 3.58 16 15 C 0.00 0.00 5.46 84.65 0.46 0.46 16 16 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 17 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.05 1.97 5.61 86.31 0.48 2.45 16 22 C 0.07 2.05 5.61 86.31 0.48 2.54 16 23 O -0.19 -5.10 10.65 -2.51 -0.03 -5.13 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.10 2.05 8.03 -2.39 -0.02 2.03 16 32 H 0.08 1.62 8.12 -2.39 -0.02 1.60 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 2.55 6.14 -2.38 -0.01 2.53 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.07 3.08 6.79 -2.39 -0.02 3.06 16 37 H -0.04 -2.65 8.12 -2.38 -0.02 -2.67 16 38 H 0.01 0.37 8.03 -2.38 -0.02 0.35 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 2.79 8.07 -2.38 -0.02 2.77 16 42 H 0.10 2.33 8.07 -2.39 -0.02 2.31 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -69.18 345.86 -0.10 -69.27 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.96 Total: 9.75 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.12 Total: -14.36 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -8.18 Total: -106.39 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.03 Total: -5.13 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.18 -0.10 -69.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.951 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds