Wall clock time and date at job start Tue Mar 31 2020 00:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47197 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46663 * 132.70267 * 4 3 2 6 6 C 1.53004 * 109.46840 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47263 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99403 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99899 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.09007 * 109.47032 * 227.29516 * 1 2 3 25 25 H 1.09003 * 109.47513 * 347.29321 * 1 2 3 26 26 H 1.09000 * 109.47346 * 107.29690 * 1 2 3 27 27 H 1.09003 * 109.47042 * 12.70436 * 4 3 2 28 28 H 1.09000 * 109.47346 * 252.70310 * 4 3 2 29 29 H 1.09003 * 109.47254 * 60.00299 * 5 4 3 30 30 H 1.08992 * 109.47470 * 299.99448 * 5 4 3 31 31 H 1.09003 * 109.46756 * 60.00235 * 6 5 4 32 32 H 1.09000 * 109.47454 * 300.00217 * 6 5 4 33 33 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 35 35 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 36 36 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 37 37 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 38 38 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 41 41 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 42 42 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 43 43 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6270 0.9806 -1.0601 6 6 6.1570 0.9825 -1.0597 7 6 6.6585 1.9470 -2.1034 8 8 5.8697 2.5710 -2.7811 9 7 7.9834 2.1153 -2.2843 10 6 8.4708 3.0534 -3.2986 11 6 8.5160 4.4647 -2.7077 12 6 8.9966 5.4474 -3.7801 13 7 10.2792 4.9743 -4.3183 14 6 11.3724 5.7988 -4.3425 15 1 12.3664 5.3793 -4.2929 16 6 11.2029 7.1737 -4.4309 17 7 10.0484 7.6707 -4.8215 18 14 12.6132 8.3185 -3.9952 19 1 13.4235 8.5902 -5.2097 20 1 12.0693 9.5954 -3.4671 21 1 13.4682 7.6799 -2.9625 22 6 10.3667 3.6000 -4.8304 23 6 9.8741 2.6372 -3.7455 24 1 -0.3633 -0.6970 0.7552 25 1 -0.3634 1.0025 0.2260 26 1 -0.3634 -0.3055 -0.9812 27 1 4.4822 -1.0004 -0.2260 28 1 4.4811 0.3077 0.9812 29 1 4.2628 1.9828 -0.8341 30 1 4.2640 0.6748 -2.0413 31 1 6.5216 -0.0196 -1.2855 32 1 6.5198 1.2886 -0.0785 33 1 8.6141 1.6159 -1.7425 34 1 7.7984 3.0424 -4.1564 35 1 9.2053 4.4817 -1.8634 36 1 7.5201 4.7524 -2.3706 37 1 9.1278 6.4351 -3.3382 38 1 8.2610 5.5009 -4.5826 39 1 9.9301 8.6314 -4.8836 40 1 9.7421 3.5005 -5.7183 41 1 11.4014 3.3697 -5.0839 42 1 9.8430 1.6236 -4.1454 43 1 10.5529 2.6714 -2.8933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613397943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:17 Heat of formation + Delta-G solvation = 5.651795 kcal Electronic energy + Delta-G solvation = -20952.336048 eV Core-core repulsion = 17805.369970 eV Total energy + Delta-G solvation = -3146.966078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.73157 -37.43465 -35.83331 -34.37567 -33.44721 -32.12998 -30.31160 -29.83616 -29.16342 -26.75570 -24.90882 -22.73599 -22.22199 -21.47898 -20.08663 -19.22744 -17.38015 -16.75072 -16.25822 -16.03548 -15.67534 -14.75996 -14.54199 -14.12172 -14.04144 -13.85309 -13.69702 -13.51311 -13.42172 -13.01477 -12.82897 -12.63446 -12.27748 -12.25026 -11.69582 -11.47352 -11.11773 -11.06913 -10.92012 -10.70913 -10.38195 -10.24922 -10.05838 -9.96620 -9.88164 -9.78180 -9.74491 -9.40412 -8.67899 -8.40903 -6.67238 -5.77748 -3.20911 2.49947 2.54057 2.84682 3.37148 3.42102 3.44841 3.46910 4.04475 4.49962 4.71398 4.82492 4.87027 5.20313 5.20627 5.28563 5.33927 5.35393 5.37724 5.40920 5.44551 5.46855 5.49210 5.65011 5.75629 5.84508 5.96293 6.09509 6.14363 6.25272 6.38635 6.45385 6.62658 6.66135 6.78709 6.93248 6.96779 7.38747 7.47772 7.68654 7.76909 7.80114 8.45443 8.47322 9.21739 9.85153 10.42039 11.30823 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.002678 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.336101 B =10451.122020 C =10830.112353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.007 4.007 5 C -0.099 4.099 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.541 6.541 9 N -0.727 5.727 10 C 0.150 3.850 11 C -0.146 4.146 12 C 0.173 3.827 13 N -0.592 5.592 14 C -0.254 4.254 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.148 3.852 23 C -0.138 4.138 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.394 0.606 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 -16.883 10.435 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.200 4.200 3 C -0.184 4.184 4 C -0.043 4.043 5 C -0.137 4.137 6 C -0.181 4.181 7 C 0.293 3.707 8 O -0.418 6.418 9 N -0.377 5.377 10 C 0.046 3.954 11 C -0.186 4.186 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.178 4.178 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.228 0.772 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.042 -16.233 9.899 21.987 hybrid contribution 1.002 0.409 0.517 1.200 sum -10.040 -15.824 10.417 21.441 Atomic orbital electron populations 1.18836 0.84780 1.02969 1.02911 1.22422 0.93993 1.01786 1.01751 1.22345 0.93682 1.01159 1.01166 1.18718 0.84456 1.00740 1.00405 1.21277 0.93108 1.00095 0.99243 1.21687 0.97291 0.99887 0.99268 1.20609 0.82604 0.83111 0.84400 1.90719 1.55213 1.48194 1.47666 1.46357 1.06691 1.44770 1.39870 1.21030 0.95246 0.88728 0.90351 1.22554 1.00091 0.95273 1.00692 1.20749 0.86016 0.96219 0.92325 1.44094 1.09026 1.08857 1.69553 1.19153 0.86445 0.87639 1.45146 0.91691 1.25073 0.96963 0.97705 0.99948 1.70036 1.24029 1.11684 1.48779 0.86307 0.81768 0.80434 0.78304 1.21384 1.21561 1.20513 1.20841 0.98659 0.85708 0.92719 1.22322 0.95237 0.99136 1.01107 0.90395 0.90234 0.90261 0.89645 0.89601 0.90719 0.90791 0.88936 0.88859 0.77234 0.90170 0.92755 0.92892 0.89313 0.96176 0.93572 0.96250 0.92352 0.92682 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.09 16 2 C -0.20 -2.12 14.13 -37.12 -0.52 -2.65 16 3 C -0.18 -2.01 13.34 -37.12 -0.50 -2.51 16 4 C -0.01 -0.06 5.70 -29.52 -0.17 -0.22 16 5 C -0.10 -1.02 4.46 -26.73 -0.12 -1.14 16 6 C -0.14 -1.29 5.70 -27.88 -0.16 -1.45 16 7 C 0.51 7.20 7.79 -10.99 -0.09 7.11 16 8 O -0.54 -10.25 15.64 5.56 0.09 -10.16 16 9 N -0.73 -9.90 5.08 -53.75 -0.27 -10.17 16 10 C 0.15 2.62 2.41 -67.87 -0.16 2.45 16 11 C -0.15 -2.94 5.66 -26.60 -0.15 -3.09 16 12 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 13 N -0.59 -14.90 3.00 -172.32 -0.52 -15.41 16 14 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 15 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 16 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.52 11.20 55.49 0.62 -25.90 16 18 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 23 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.39 4.07 8.60 -40.82 -0.35 3.72 16 34 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -33.45 355.62 -9.04 -42.49 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.36 Total: 0.82 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.93 Total: -3.71 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.17 Total: -51.49 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.45 -9.04 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613397943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.145 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds