Wall clock time and date at job start Tue Mar 31 2020 00:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47197 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46663 * 132.70267 * 4 3 2 6 6 C 1.53004 * 109.46840 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47263 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99403 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99899 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.09007 * 109.47032 * 227.29516 * 1 2 3 25 25 H 1.09003 * 109.47513 * 347.29321 * 1 2 3 26 26 H 1.09000 * 109.47346 * 107.29690 * 1 2 3 27 27 H 1.09003 * 109.47042 * 12.70436 * 4 3 2 28 28 H 1.09000 * 109.47346 * 252.70310 * 4 3 2 29 29 H 1.09003 * 109.47254 * 60.00299 * 5 4 3 30 30 H 1.08992 * 109.47470 * 299.99448 * 5 4 3 31 31 H 1.09003 * 109.46756 * 60.00235 * 6 5 4 32 32 H 1.09000 * 109.47454 * 300.00217 * 6 5 4 33 33 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 35 35 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 36 36 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 37 37 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 38 38 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 41 41 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 42 42 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 43 43 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6270 0.9806 -1.0601 6 6 6.1570 0.9825 -1.0597 7 6 6.6585 1.9470 -2.1034 8 8 5.8697 2.5710 -2.7811 9 7 7.9834 2.1153 -2.2843 10 6 8.4708 3.0534 -3.2986 11 6 8.5160 4.4647 -2.7077 12 6 8.9966 5.4474 -3.7801 13 7 10.2792 4.9743 -4.3183 14 6 11.3724 5.7988 -4.3425 15 1 12.3664 5.3793 -4.2929 16 6 11.2029 7.1737 -4.4309 17 7 10.0484 7.6707 -4.8215 18 14 12.6132 8.3185 -3.9952 19 1 13.4235 8.5902 -5.2097 20 1 12.0693 9.5954 -3.4671 21 1 13.4682 7.6799 -2.9625 22 6 10.3667 3.6000 -4.8304 23 6 9.8741 2.6372 -3.7455 24 1 -0.3633 -0.6970 0.7552 25 1 -0.3634 1.0025 0.2260 26 1 -0.3634 -0.3055 -0.9812 27 1 4.4822 -1.0004 -0.2260 28 1 4.4811 0.3077 0.9812 29 1 4.2628 1.9828 -0.8341 30 1 4.2640 0.6748 -2.0413 31 1 6.5216 -0.0196 -1.2855 32 1 6.5198 1.2886 -0.0785 33 1 8.6141 1.6159 -1.7425 34 1 7.7984 3.0424 -4.1564 35 1 9.2053 4.4817 -1.8634 36 1 7.5201 4.7524 -2.3706 37 1 9.1278 6.4351 -3.3382 38 1 8.2610 5.5009 -4.5826 39 1 9.9301 8.6314 -4.8836 40 1 9.7421 3.5005 -5.7183 41 1 11.4014 3.3697 -5.0839 42 1 9.8430 1.6236 -4.1454 43 1 10.5529 2.6714 -2.8933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613397943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:17 Heat of formation + Delta-G solvation = -15.314295 kcal Electronic energy + Delta-G solvation = -20953.245206 eV Core-core repulsion = 17805.369970 eV Total energy + Delta-G solvation = -3147.875236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96826 -39.02101 -36.66094 -35.94455 -34.23806 -33.85182 -31.86085 -31.38586 -30.24115 -27.66897 -26.63138 -24.07624 -23.90005 -22.73881 -21.33442 -20.77710 -18.86946 -18.15630 -17.27617 -17.08375 -16.84198 -16.59721 -15.68930 -15.45940 -15.36483 -15.01743 -14.73318 -14.69718 -14.50993 -14.21344 -14.19150 -14.08167 -13.37024 -13.18905 -13.13390 -12.99926 -12.67155 -12.55100 -12.44623 -12.12624 -12.07437 -11.86078 -11.83872 -11.53619 -11.38702 -10.83561 -10.61359 -10.58860 -10.56809 -9.95428 -8.72239 -7.88337 -5.35059 1.46847 1.48433 1.58388 1.71974 1.74333 1.78538 2.30790 2.51028 3.27625 3.40002 3.64227 3.80043 3.91595 4.06361 4.12038 4.14258 4.34005 4.46715 4.51105 4.65925 4.67477 4.71696 4.76718 4.80146 4.81675 4.85301 4.86856 4.91452 5.06414 5.08056 5.12916 5.16214 5.22211 5.31053 5.34831 5.45265 5.61238 5.63496 5.68323 6.37589 6.69603 6.73728 7.12137 7.40198 7.83222 8.36232 9.18808 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.002678 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.336101 B =10451.122020 C =10830.112353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.221 4.221 3 C -0.215 4.215 4 C -0.001 4.001 5 C -0.095 4.095 6 C -0.126 4.126 7 C 0.500 3.500 8 O -0.597 6.597 9 N -0.712 5.712 10 C 0.160 3.840 11 C -0.129 4.129 12 C 0.182 3.818 13 N -0.609 5.609 14 C -0.261 4.261 15 H 0.075 0.925 16 C -0.057 4.057 17 N -0.940 5.940 18 Si 0.971 3.029 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.266 1.266 22 C 0.139 3.861 23 C -0.120 4.120 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.417 0.583 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.054 0.946 38 H -0.015 1.015 39 H 0.249 0.751 40 H 0.009 0.991 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -19.601 12.459 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.221 4.221 3 C -0.215 4.215 4 C -0.037 4.037 5 C -0.133 4.133 6 C -0.166 4.166 7 C 0.289 3.711 8 O -0.477 6.477 9 N -0.363 5.363 10 C 0.055 3.945 11 C -0.170 4.170 12 C 0.055 3.945 13 N -0.333 5.333 14 C -0.391 4.391 15 H 0.092 0.908 16 C -0.252 4.252 17 N -0.586 5.586 18 Si 0.799 3.201 19 H -0.211 1.211 20 H -0.222 1.222 21 H -0.190 1.190 22 C 0.014 3.986 23 C -0.159 4.159 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.003 0.997 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.691 -19.022 11.955 24.468 hybrid contribution 0.528 1.227 -0.173 1.347 sum -9.163 -17.795 11.782 23.226 Atomic orbital electron populations 1.19049 0.82789 1.04011 1.04089 1.23430 0.95513 1.01641 1.01556 1.23173 0.95049 1.01633 1.01676 1.18800 0.83025 1.01328 1.00553 1.21177 0.94226 0.99128 0.98807 1.21704 0.95924 1.00225 0.98720 1.21595 0.82054 0.82977 0.84480 1.90712 1.56567 1.50504 1.49946 1.46068 1.07239 1.43875 1.39139 1.20614 0.95612 0.88026 0.90276 1.22293 0.99297 0.96129 0.99248 1.20458 0.85600 0.96123 0.92300 1.44348 1.08363 1.10388 1.70195 1.19569 0.87456 0.88229 1.43838 0.90769 1.25919 0.99410 0.99394 1.00482 1.70216 1.26304 1.11457 1.50628 0.85228 0.78801 0.77961 0.78159 1.21074 1.22242 1.19015 1.21065 0.99391 0.84338 0.93854 1.22114 0.94144 0.99541 1.00133 0.88592 0.89443 0.89324 0.87248 0.87550 0.93511 0.93090 0.85119 0.85680 0.74568 0.93071 0.91850 0.93893 0.92738 0.99650 0.94196 0.97342 0.91325 0.88979 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.55 10.32 70.18 0.72 0.18 16 2 C -0.22 -4.60 14.13 31.12 0.44 -4.16 16 3 C -0.22 -4.55 13.34 31.12 0.42 -4.14 16 4 C 0.00 -0.01 5.70 28.79 0.16 0.15 16 5 C -0.10 -1.85 4.46 30.60 0.14 -1.71 16 6 C -0.13 -1.87 5.70 29.85 0.17 -1.70 16 7 C 0.50 13.33 7.79 87.66 0.68 14.02 16 8 O -0.60 -22.97 15.64 -3.02 -0.05 -23.02 16 9 N -0.71 -17.39 5.08 -442.35 -2.25 -19.63 16 10 C 0.16 5.40 2.41 45.03 0.11 5.51 16 11 C -0.13 -5.26 5.66 30.68 0.17 -5.08 16 12 C 0.18 9.35 5.30 86.36 0.46 9.81 16 13 N -0.61 -30.98 3.00 -699.10 -2.09 -33.08 16 14 C -0.26 -14.34 9.58 84.03 0.81 -13.53 16 15 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 16 C -0.06 -3.24 4.92 84.86 0.42 -2.83 16 17 N -0.94 -57.49 11.20 21.65 0.24 -57.25 16 18 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 C 0.14 5.64 6.52 86.36 0.56 6.20 16 23 C -0.12 -3.63 5.55 30.67 0.17 -3.46 16 24 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 6.65 8.60 -92.71 -0.80 5.85 16 34 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 35 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.05 3.15 6.06 -2.39 -0.01 3.14 16 38 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 42 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -77.72 355.62 3.50 -74.22 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.19 Total: 12.35 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.43 Total: -0.75 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -4.10 Total: -109.96 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -77.72 3.50 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613397943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.902 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds