Wall clock time and date at job start Tue Mar 31 2020 00:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47013 * 290.53665 * 3 2 1 5 5 C 1.53000 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47480 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47424 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99701 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00326 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00360 * 180.02562 * 9 7 6 11 11 C 1.53071 * 109.44009 * 84.79625 * 10 9 7 12 12 C 1.53201 * 109.29371 * 181.23934 * 11 10 9 13 13 N 1.46928 * 108.89275 * 305.57634 * 12 11 10 14 14 C 1.36934 * 120.63265 * 233.51651 * 13 12 11 15 15 H 1.07997 * 119.99862 * 151.82898 * 14 13 12 16 16 C 1.38806 * 120.00015 * 331.83027 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08772 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.08448 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00161 * 18 16 14 20 20 H 1.48498 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47267 * 300.00095 * 18 16 14 22 22 C 1.46932 * 118.73342 * 53.53882 * 13 12 11 23 23 C 1.53045 * 109.46092 * 205.00269 * 10 9 7 24 24 H 4.44655 * 5.63430 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.46803 * 170.53568 * 3 2 1 26 26 H 1.08999 * 109.47041 * 50.53755 * 3 2 1 27 27 H 1.08994 * 109.47550 * 60.00082 * 4 3 2 28 28 H 1.08999 * 109.46811 * 300.00165 * 4 3 2 29 29 H 1.09003 * 109.46860 * 59.99816 * 5 4 3 30 30 H 1.08999 * 109.46898 * 300.00055 * 5 4 3 31 31 H 1.09003 * 109.46960 * 60.00201 * 6 5 4 32 32 H 1.08999 * 109.46885 * 300.00321 * 6 5 4 33 33 H 0.97005 * 119.99791 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.45866 * 324.97703 * 10 9 7 35 35 H 1.09002 * 109.39343 * 61.36176 * 11 10 9 36 36 H 1.09003 * 109.62467 * 301.25403 * 11 10 9 37 37 H 1.09000 * 109.58250 * 185.72113 * 12 11 10 38 38 H 1.08995 * 109.58477 * 65.43833 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.59017 * 66.18099 * 22 13 12 41 41 H 1.09009 * 109.58200 * 186.46074 * 22 13 12 42 42 H 1.09002 * 109.49555 * 58.67538 * 23 10 9 43 43 H 1.08992 * 109.52043 * 298.59539 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.5052 1.3508 5 6 4.6862 -0.5039 1.3511 6 6 5.1965 -1.0091 2.7021 7 6 6.7035 -1.0084 2.7021 8 8 7.3097 -0.6396 1.7184 9 7 7.3776 -1.4165 3.7954 10 6 8.8426 -1.4154 3.7956 11 6 9.3508 -0.0226 4.1764 12 6 10.8825 -0.0168 4.1455 13 7 11.3798 -1.0996 5.0052 14 6 12.2879 -0.8417 5.9972 15 1 12.3160 -1.4648 6.8788 16 6 13.1721 0.2207 5.8697 17 7 13.3764 0.7691 4.6907 18 14 14.0722 0.8722 7.3713 19 1 14.8968 -0.2118 7.9631 20 1 14.9506 2.0006 6.9709 21 1 13.0843 1.3461 8.3736 22 6 10.8847 -2.4645 4.7798 23 6 9.3531 -2.4442 4.8071 24 1 -1.0500 0.0001 0.0002 25 1 3.0089 1.0145 -0.1690 26 1 3.0096 -0.6523 -0.7934 27 1 2.7934 -1.5189 1.5198 28 1 2.7926 0.1479 2.1442 29 1 5.0487 0.5102 1.1823 30 1 5.0502 -1.1566 0.5576 31 1 4.8340 -2.0230 2.8712 32 1 4.8325 -0.3560 3.4952 33 1 6.8927 -1.7111 4.5822 34 1 9.2060 -1.6728 2.8008 35 1 9.0063 0.2265 5.1801 36 1 8.9699 0.7126 3.4676 37 1 11.2517 0.9406 4.5132 38 1 11.2279 -0.1736 3.1237 39 1 13.9945 1.5112 4.6015 40 1 11.2282 -2.8222 3.8092 41 1 11.2575 -3.1226 5.5647 42 1 8.9715 -3.4313 4.5461 43 1 9.0105 -2.1740 5.8059 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706371548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:21 Heat of formation + Delta-G solvation = 9.606719 kcal Electronic energy + Delta-G solvation = -21045.978514 eV Core-core repulsion = 17899.183935 eV Total energy + Delta-G solvation = -3146.794579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.72862 -37.45866 -36.28305 -34.37978 -33.37321 -32.12838 -30.42973 -29.89150 -29.21758 -25.74333 -24.53340 -22.26230 -22.09956 -21.26245 -20.09283 -19.23100 -18.31441 -17.04329 -16.51084 -16.20669 -15.75169 -14.89668 -14.77027 -14.50549 -14.04863 -13.80467 -13.49979 -13.38348 -13.09478 -12.91045 -12.54963 -12.45193 -11.94898 -11.85267 -11.47921 -11.45368 -11.11217 -10.92237 -10.88141 -10.71495 -10.47347 -10.38488 -10.36592 -10.25047 -10.05663 -9.78278 -9.74541 -9.40187 -8.67668 -8.40725 -6.67552 -5.77696 -3.21044 2.52248 2.56150 2.85121 3.37848 3.42088 3.44745 3.45631 4.07338 4.49920 4.66066 4.70645 4.76889 5.08683 5.09801 5.26564 5.32083 5.40872 5.45877 5.46690 5.55391 5.57070 5.65311 5.73115 5.76147 5.84386 6.02197 6.09379 6.15944 6.25107 6.38622 6.45258 6.62596 6.65964 6.78484 6.93116 6.96740 7.33379 7.38604 7.68425 7.77169 7.79888 8.45488 8.47461 9.21719 9.85009 10.41969 11.30826 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042043 B = 0.002619 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.819493 B =10688.559826 C =10937.093863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.182 4.182 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.542 6.542 9 N -0.727 5.727 10 C 0.150 3.850 11 C -0.146 4.146 12 C 0.173 3.827 13 N -0.592 5.592 14 C -0.255 4.255 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.148 3.852 23 C -0.138 4.138 24 H 0.215 0.785 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.394 0.606 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.020 0.980 39 H 0.255 0.745 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.384 -4.076 -4.340 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.182 4.182 3 C -0.053 4.053 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.181 4.181 7 C 0.293 3.707 8 O -0.419 6.419 9 N -0.377 5.377 10 C 0.047 3.953 11 C -0.186 4.186 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.385 4.385 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.021 3.979 23 C -0.178 4.178 24 H 0.232 0.768 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.227 0.773 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.780 -3.674 -5.094 21.708 hybrid contribution -0.015 0.255 1.180 1.207 sum -20.795 -3.419 -3.914 21.435 Atomic orbital electron populations 1.24902 0.95994 1.01603 1.01138 1.23267 0.94691 1.00032 1.00203 1.18794 0.84409 1.03075 0.99009 1.21562 0.95543 1.01778 0.96263 1.21342 0.93608 1.03008 0.96327 1.21679 0.92593 1.03558 1.00271 1.20658 0.89953 0.77116 0.83005 1.90711 1.70498 1.46973 1.33725 1.46371 1.08291 1.66818 1.16244 1.21028 0.77347 0.96822 1.00148 1.22558 1.00857 0.95050 1.00142 1.20752 0.86773 0.94263 0.93518 1.44089 1.48389 1.00933 1.38099 1.19125 1.09794 1.13652 0.95901 0.91708 1.25073 0.97199 1.01088 0.96287 1.70025 1.37404 1.26103 1.21008 0.86362 0.79272 0.78465 0.82597 1.20874 1.21639 1.21062 1.20842 0.89835 0.88699 0.98544 1.22322 1.00000 0.96954 0.98543 0.76777 0.89323 0.89366 0.91555 0.91512 0.90823 0.90898 0.89194 0.89100 0.77264 0.90167 0.92781 0.92880 0.89315 0.96167 0.93516 0.96238 0.92362 0.92694 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.77 19.25 29.55 0.57 -1.20 16 2 C -0.18 -1.64 13.34 -37.12 -0.50 -2.14 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -0.84 5.17 -26.73 -0.14 -0.98 16 5 C -0.10 -0.96 4.50 -26.73 -0.12 -1.08 16 6 C -0.14 -1.29 5.70 -27.89 -0.16 -1.45 16 7 C 0.51 7.10 7.79 -10.99 -0.09 7.01 16 8 O -0.54 -10.00 15.65 5.55 0.09 -9.91 16 9 N -0.73 -9.90 5.08 -53.75 -0.27 -10.17 16 10 C 0.15 2.61 2.41 -67.87 -0.16 2.44 16 11 C -0.15 -2.93 5.66 -26.59 -0.15 -3.08 16 12 C 0.17 4.25 5.30 -3.71 -0.02 4.23 16 13 N -0.59 -14.85 3.00 -172.31 -0.52 -15.37 16 14 C -0.26 -6.98 9.58 -15.06 -0.14 -7.13 16 15 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -26.44 11.20 55.49 0.62 -25.82 16 18 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 23 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 24 H 0.22 1.00 7.80 -54.09 -0.42 0.58 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.39 4.13 8.60 -40.82 -0.35 3.78 16 34 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.16 7.93 -51.92 -0.41 0.74 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -32.54 355.29 -8.45 -40.98 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.36 Total: 1.35 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.33 Total: -3.08 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.17 Total: -51.36 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.54 -8.45 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706371548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.590 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds