Wall clock time and date at job start Tue Mar 31 2020 00:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47013 * 290.53665 * 3 2 1 5 5 C 1.53000 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47480 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47424 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99701 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00326 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00360 * 180.02562 * 9 7 6 11 11 C 1.53071 * 109.44009 * 84.79625 * 10 9 7 12 12 C 1.53201 * 109.29371 * 181.23934 * 11 10 9 13 13 N 1.46928 * 108.89275 * 305.57634 * 12 11 10 14 14 C 1.36934 * 120.63265 * 233.51651 * 13 12 11 15 15 H 1.07997 * 119.99862 * 151.82898 * 14 13 12 16 16 C 1.38806 * 120.00015 * 331.83027 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08772 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.08448 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00161 * 18 16 14 20 20 H 1.48498 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47267 * 300.00095 * 18 16 14 22 22 C 1.46932 * 118.73342 * 53.53882 * 13 12 11 23 23 C 1.53045 * 109.46092 * 205.00269 * 10 9 7 24 24 H 4.44655 * 5.63430 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.46803 * 170.53568 * 3 2 1 26 26 H 1.08999 * 109.47041 * 50.53755 * 3 2 1 27 27 H 1.08994 * 109.47550 * 60.00082 * 4 3 2 28 28 H 1.08999 * 109.46811 * 300.00165 * 4 3 2 29 29 H 1.09003 * 109.46860 * 59.99816 * 5 4 3 30 30 H 1.08999 * 109.46898 * 300.00055 * 5 4 3 31 31 H 1.09003 * 109.46960 * 60.00201 * 6 5 4 32 32 H 1.08999 * 109.46885 * 300.00321 * 6 5 4 33 33 H 0.97005 * 119.99791 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.45866 * 324.97703 * 10 9 7 35 35 H 1.09002 * 109.39343 * 61.36176 * 11 10 9 36 36 H 1.09003 * 109.62467 * 301.25403 * 11 10 9 37 37 H 1.09000 * 109.58250 * 185.72113 * 12 11 10 38 38 H 1.08995 * 109.58477 * 65.43833 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.59017 * 66.18099 * 22 13 12 41 41 H 1.09009 * 109.58200 * 186.46074 * 22 13 12 42 42 H 1.09002 * 109.49555 * 58.67538 * 23 10 9 43 43 H 1.08992 * 109.52043 * 298.59539 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.5052 1.3508 5 6 4.6862 -0.5039 1.3511 6 6 5.1965 -1.0091 2.7021 7 6 6.7035 -1.0084 2.7021 8 8 7.3097 -0.6396 1.7184 9 7 7.3776 -1.4165 3.7954 10 6 8.8426 -1.4154 3.7956 11 6 9.3508 -0.0226 4.1764 12 6 10.8825 -0.0168 4.1455 13 7 11.3798 -1.0996 5.0052 14 6 12.2879 -0.8417 5.9972 15 1 12.3160 -1.4648 6.8788 16 6 13.1721 0.2207 5.8697 17 7 13.3764 0.7691 4.6907 18 14 14.0722 0.8722 7.3713 19 1 14.8968 -0.2118 7.9631 20 1 14.9506 2.0006 6.9709 21 1 13.0843 1.3461 8.3736 22 6 10.8847 -2.4645 4.7798 23 6 9.3531 -2.4442 4.8071 24 1 -1.0500 0.0001 0.0002 25 1 3.0089 1.0145 -0.1690 26 1 3.0096 -0.6523 -0.7934 27 1 2.7934 -1.5189 1.5198 28 1 2.7926 0.1479 2.1442 29 1 5.0487 0.5102 1.1823 30 1 5.0502 -1.1566 0.5576 31 1 4.8340 -2.0230 2.8712 32 1 4.8325 -0.3560 3.4952 33 1 6.8927 -1.7111 4.5822 34 1 9.2060 -1.6728 2.8008 35 1 9.0063 0.2265 5.1801 36 1 8.9699 0.7126 3.4676 37 1 11.2517 0.9406 4.5132 38 1 11.2279 -0.1736 3.1237 39 1 13.9945 1.5112 4.6015 40 1 11.2282 -2.8222 3.8092 41 1 11.2575 -3.1226 5.5647 42 1 8.9715 -3.4313 4.5461 43 1 9.0105 -2.1740 5.8059 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706371548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:20 Heat of formation + Delta-G solvation = -10.296431 kcal Electronic energy + Delta-G solvation = -21046.841580 eV Core-core repulsion = 17899.183935 eV Total energy + Delta-G solvation = -3147.657645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94987 -39.01462 -37.01555 -35.95492 -34.15353 -33.81026 -31.86877 -31.41421 -30.42805 -27.17384 -25.83001 -23.92403 -23.61120 -22.14061 -21.32376 -20.77985 -18.94232 -18.76855 -17.77505 -17.20914 -16.92755 -16.64884 -15.84767 -15.60755 -15.36268 -15.11688 -15.01867 -14.71081 -14.53603 -14.08345 -13.92558 -13.76856 -13.22532 -13.02717 -12.71635 -12.60438 -12.56525 -12.50763 -12.15097 -12.12348 -12.07559 -11.85958 -11.57660 -11.52427 -11.38205 -11.11163 -10.95657 -10.70323 -10.57641 -9.94326 -8.71785 -7.87771 -5.34580 1.47321 1.50131 1.56932 1.75563 1.90200 1.94744 2.30901 2.51415 3.27854 3.51055 3.65203 3.82632 3.92712 4.04403 4.06624 4.10905 4.34245 4.44716 4.46799 4.47806 4.66309 4.66800 4.78548 4.80766 4.84639 4.93381 4.94374 5.07254 5.09066 5.12637 5.14134 5.23345 5.31386 5.36788 5.45683 5.47486 5.62272 5.63908 5.69000 6.38007 6.69994 6.73914 7.12697 7.40497 7.83723 8.36715 9.19133 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042043 B = 0.002619 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.819493 B =10688.559826 C =10937.093863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.216 4.216 3 C -0.020 4.020 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.130 4.130 7 C 0.501 3.499 8 O -0.593 6.593 9 N -0.714 5.714 10 C 0.160 3.840 11 C -0.129 4.129 12 C 0.182 3.818 13 N -0.609 5.609 14 C -0.262 4.262 15 H 0.074 0.926 16 C -0.056 4.056 17 N -0.939 5.939 18 Si 0.971 3.029 19 H -0.272 1.272 20 H -0.298 1.298 21 H -0.276 1.276 22 C 0.140 3.860 23 C -0.121 4.121 24 H 0.242 0.758 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.415 0.585 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.054 0.946 38 H -0.013 1.013 39 H 0.249 0.751 40 H 0.010 0.990 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.052 -5.437 -2.538 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.216 4.216 3 C -0.056 4.056 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.169 4.169 7 C 0.290 3.710 8 O -0.473 6.473 9 N -0.365 5.365 10 C 0.055 3.945 11 C -0.170 4.170 12 C 0.055 3.945 13 N -0.333 5.333 14 C -0.392 4.392 15 H 0.092 0.908 16 C -0.251 4.251 17 N -0.585 5.585 18 Si 0.799 3.201 19 H -0.198 1.198 20 H -0.224 1.224 21 H -0.202 1.202 22 C 0.014 3.986 23 C -0.160 4.160 24 H 0.258 0.742 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.252 0.748 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.005 0.995 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.501 -5.081 -3.253 24.263 hybrid contribution 0.791 0.642 0.550 1.158 sum -22.710 -4.439 -2.704 23.297 Atomic orbital electron populations 1.25691 0.96936 1.00545 1.00066 1.23710 0.95509 1.01085 1.01274 1.18830 0.84135 1.03232 0.99406 1.21445 0.93818 1.02447 0.96231 1.21288 0.94891 1.01666 0.96194 1.21712 0.88318 1.06025 1.00847 1.21587 0.91958 0.75514 0.81953 1.90704 1.71931 1.49063 1.35630 1.46103 1.06472 1.66651 1.17301 1.20613 0.79837 0.95089 0.98944 1.22297 0.97316 0.97060 1.00301 1.20465 0.89751 0.92859 0.91408 1.44339 1.48465 1.02746 1.37731 1.19536 1.09578 1.13505 0.96623 0.90838 1.25909 0.98590 1.01739 0.98862 1.70207 1.38486 1.26634 1.23191 0.85288 0.78035 0.77593 0.79212 1.19801 1.22412 1.20184 1.21060 0.92788 0.86477 0.98283 1.22116 0.96500 0.98518 0.98863 0.74174 0.89358 0.89125 0.90591 0.90912 0.92619 0.92186 0.86065 0.86609 0.74764 0.92897 0.92038 0.93741 0.92745 0.99507 0.94173 0.97236 0.91401 0.89042 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.06 19.25 74.32 1.43 -1.63 16 2 C -0.22 -3.61 13.34 31.13 0.42 -3.19 16 3 C -0.02 -0.28 5.70 28.79 0.16 -0.11 16 4 C -0.10 -1.29 5.17 30.59 0.16 -1.13 16 5 C -0.10 -1.73 4.50 30.59 0.14 -1.59 16 6 C -0.13 -1.97 5.70 29.84 0.17 -1.80 16 7 C 0.50 13.19 7.79 87.66 0.68 13.87 16 8 O -0.59 -22.02 15.65 -3.05 -0.05 -22.07 16 9 N -0.71 -17.57 5.08 -442.36 -2.25 -19.82 16 10 C 0.16 5.39 2.41 45.03 0.11 5.50 16 11 C -0.13 -5.23 5.66 30.69 0.17 -5.06 16 12 C 0.18 9.30 5.30 86.37 0.46 9.76 16 13 N -0.61 -30.90 3.00 -699.07 -2.09 -32.99 16 14 C -0.26 -14.40 9.58 84.03 0.81 -13.60 16 15 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 16 C -0.06 -3.17 4.92 84.86 0.42 -2.75 16 17 N -0.94 -57.21 11.20 21.65 0.24 -56.97 16 18 Si 0.97 45.06 29.59 68.60 2.03 47.09 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 C 0.14 5.64 6.52 86.36 0.56 6.21 16 23 C -0.12 -3.66 5.55 30.67 0.17 -3.49 16 24 H 0.24 1.63 7.80 -4.42 -0.03 1.60 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 30 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 31 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 6.92 8.60 -92.70 -0.80 6.12 16 34 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 3.13 6.06 -2.39 -0.01 3.12 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.07 2.58 7.93 -2.38 -0.02 2.56 16 42 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -73.89 355.29 3.91 -69.97 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.17 Total: 13.81 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.85 Total: 0.97 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.10 Total: -109.78 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.89 3.91 -69.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706371548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.678 kcal (2) G-P(sol) polarization free energy of solvation -73.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds