Wall clock time and date at job start Tue Mar 31 2020 00:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47180 * 2 1 4 4 C 1.50705 * 109.46907 * 119.99958 * 2 1 3 5 5 C 1.34326 * 126.44455 * 119.99635 * 4 2 1 6 6 N 1.34469 * 107.67048 * 179.76516 * 5 4 2 7 7 C 1.30251 * 108.70186 * 0.42750 * 6 5 4 8 8 C 1.50703 * 125.62413 * 179.83897 * 7 6 5 9 9 N 1.46500 * 109.47345 * 89.68730 * 8 7 6 10 10 C 1.36934 * 120.00031 * 270.00247 * 9 8 7 11 11 H 1.08001 * 119.99513 * 141.74067 * 10 9 8 12 12 C 1.38805 * 120.00261 * 321.74034 * 10 9 8 13 13 N 1.31617 * 120.00208 * 156.41003 * 12 10 9 14 14 Si 1.86802 * 120.00270 * 336.41284 * 12 10 9 15 15 H 1.48499 * 109.46804 * 95.12304 * 14 12 10 16 16 H 1.48493 * 109.47286 * 215.12497 * 14 12 10 17 17 H 1.48501 * 109.46588 * 335.12732 * 14 12 10 18 18 C 1.46500 * 119.99775 * 90.00397 * 9 8 7 19 19 C 1.55234 * 110.58140 * 240.10260 * 18 9 8 20 20 C 1.54890 * 102.58852 * 203.34093 * 19 18 9 21 21 C 1.54262 * 104.31489 * 37.92833 * 20 19 18 22 22 C 1.53876 * 106.59797 * 336.32715 * 21 20 19 23 23 O 1.33972 * 108.76193 * 359.57216 * 7 6 5 24 24 H 1.08998 * 109.47181 * 300.00309 * 1 2 3 25 25 H 1.09002 * 109.46947 * 59.99881 * 1 2 3 26 26 H 1.09004 * 109.47721 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47181 * 239.99691 * 2 1 3 28 28 H 1.09002 * 109.47277 * 299.99916 * 3 2 1 29 29 H 1.08998 * 109.47315 * 59.99773 * 3 2 1 30 30 H 1.09003 * 109.47192 * 179.97438 * 3 2 1 31 31 H 1.08004 * 126.16229 * 0.02562 * 5 4 2 32 32 H 1.09007 * 109.46588 * 329.69179 * 8 7 6 33 33 H 1.08998 * 109.47290 * 209.69478 * 8 7 6 34 34 H 0.97000 * 120.00628 * 179.97438 * 13 12 10 35 35 H 1.08999 * 110.43242 * 2.68187 * 18 9 8 36 36 H 1.09001 * 110.89929 * 85.04382 * 19 18 9 37 37 H 1.09001 * 110.76364 * 321.56781 * 19 18 9 38 38 H 1.08998 * 110.48159 * 279.18263 * 20 19 18 39 39 H 1.09001 * 110.48850 * 156.67822 * 20 19 18 40 40 H 1.08997 * 110.03525 * 95.61043 * 21 20 19 41 41 H 1.09001 * 110.03414 * 216.99225 * 21 20 19 42 42 H 1.09001 * 110.03224 * 119.28274 * 22 21 20 43 43 H 1.09002 * 110.03405 * 240.66752 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8076 -1.8070 1.2582 6 7 3.0322 -2.1156 2.5476 7 6 2.4128 -1.2500 3.2983 8 6 2.4058 -1.2410 4.8052 9 7 3.5314 -0.4407 5.2941 10 6 4.7420 -1.0350 5.5314 11 1 5.6562 -0.5138 5.2885 12 6 4.7942 -2.3072 6.0842 13 7 5.8553 -3.0630 5.8970 14 14 3.3584 -2.9466 7.0938 15 1 2.4608 -3.7492 6.2247 16 1 3.8698 -3.7980 8.1977 17 1 2.6033 -1.8008 7.6613 18 6 3.3616 0.9953 5.5290 19 6 4.3379 1.8127 4.6409 20 6 4.4634 3.1472 5.4171 21 6 4.4684 2.7262 6.9012 22 6 3.7679 1.3580 6.9723 23 8 1.7877 -0.3653 2.5099 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 3.1861 -2.3418 0.3996 32 1 2.4984 -2.2622 5.1750 33 1 1.4708 -0.8089 5.1617 34 1 5.8920 -3.9519 6.2835 35 1 2.3310 1.2932 5.3364 36 1 3.9149 1.9802 3.6504 37 1 5.3049 1.3146 4.5701 38 1 3.6107 3.7926 5.2065 39 1 5.3950 3.6516 5.1605 40 1 5.4935 2.6400 7.2615 41 1 3.9233 3.4571 7.4985 42 1 4.4530 0.6078 7.3671 43 1 2.8825 1.4243 7.6047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738331084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:46 Heat of formation + Delta-G solvation = 27.713516 kcal Electronic energy + Delta-G solvation = -22848.956519 eV Core-core repulsion = 19702.947109 eV Total energy + Delta-G solvation = -3146.009410 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.58422 -37.91800 -35.65750 -34.65472 -33.87482 -31.63231 -29.54574 -27.99048 -27.22030 -27.16174 -25.97978 -22.99771 -22.07758 -21.39834 -19.96790 -19.77988 -19.10492 -17.02547 -16.19784 -15.76442 -15.50742 -15.27005 -14.99575 -14.45081 -14.36957 -13.55023 -13.22441 -13.03311 -12.89807 -12.70104 -12.58440 -12.44128 -12.25267 -11.54809 -11.42117 -11.26671 -11.11182 -11.01674 -10.84138 -10.62765 -10.55133 -10.49365 -10.41775 -10.17142 -9.99309 -9.73682 -9.60673 -9.53937 -8.52628 -8.04641 -6.97801 -6.02743 -3.46593 2.09527 3.27363 3.28763 3.42737 3.47280 3.50001 4.48498 4.69763 4.81037 4.89306 5.01494 5.06847 5.21410 5.31347 5.38284 5.41211 5.54186 5.56231 5.63489 5.73475 5.76505 5.85339 5.96747 6.02441 6.11579 6.14309 6.16917 6.18553 6.22042 6.31707 6.34055 6.47842 6.49878 6.51800 6.66802 6.67472 6.92604 7.01189 7.04131 7.16790 7.97942 8.36531 8.60550 8.88933 9.65075 9.99747 11.11813 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.007315 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.979681 B = 3826.671354 C = 5094.368827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.002 4.002 3 C -0.147 4.147 4 C -0.073 4.073 5 C -0.041 4.041 6 N -0.472 5.472 7 C 0.197 3.803 8 C 0.218 3.782 9 N -0.575 5.575 10 C -0.271 4.271 11 H 0.081 0.919 12 C 0.052 3.948 13 N -0.881 5.881 14 Si 0.859 3.141 15 H -0.281 1.281 16 H -0.296 1.296 17 H -0.263 1.263 18 C 0.171 3.829 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.135 4.135 23 O -0.206 6.206 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.170 0.830 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.265 0.735 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 9.324 -7.249 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 C -0.204 4.204 4 C -0.127 4.127 5 C -0.180 4.180 6 N -0.200 5.200 7 C -0.013 4.013 8 C 0.089 3.911 9 N -0.294 5.294 10 C -0.399 4.399 11 H 0.099 0.901 12 C -0.151 4.151 13 N -0.520 5.520 14 Si 0.687 3.313 15 H -0.209 1.209 16 H -0.223 1.223 17 H -0.187 1.187 18 C 0.064 3.936 19 C -0.172 4.172 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.174 4.174 23 O -0.093 6.093 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.187 0.813 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.926 8.696 -6.907 14.247 hybrid contribution -0.888 -0.067 0.049 0.892 sum -9.814 8.629 -6.858 14.758 Atomic orbital electron populations 1.21856 0.94129 1.02226 1.02161 1.19565 0.95935 0.95692 0.90848 1.21849 1.01616 0.94829 1.02112 1.23125 1.05516 0.99715 0.84378 1.23039 1.01755 0.97552 0.95637 1.70559 1.21021 1.27312 1.01125 1.28716 0.90859 0.84215 0.97507 1.20223 0.92424 0.99105 0.79329 1.44268 1.09956 1.03967 1.71213 1.18532 0.83912 1.00105 1.37357 0.90110 1.25403 0.95855 0.96510 0.97312 1.69884 1.30142 1.08807 1.43168 0.87180 0.83822 0.79025 0.81231 1.20888 1.22334 1.18730 1.21418 0.96130 0.83218 0.92799 1.22913 1.01865 0.94876 0.97564 1.22270 1.00341 0.97558 0.95814 1.22038 1.00402 0.97100 0.96080 1.22500 1.00181 0.96585 0.98090 1.84380 1.59527 1.49598 1.15829 0.92196 0.92054 0.92389 0.88708 0.92077 0.92164 0.92236 0.81313 0.88612 0.91342 0.92515 0.92425 0.93248 0.90486 0.92661 0.92666 0.92324 0.93080 0.89431 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.18 37.16 0.34 -1.20 16 2 C 0.00 -0.02 3.33 -91.77 -0.31 -0.33 16 3 C -0.15 -1.66 9.18 37.16 0.34 -1.32 16 4 C -0.07 -1.25 5.89 -35.69 -0.21 -1.46 16 5 C -0.04 -0.77 11.78 -17.78 -0.21 -0.98 16 6 N -0.47 -11.05 11.29 -11.10 -0.13 -11.17 16 7 C 0.20 4.35 7.93 -12.95 -0.10 4.25 16 8 C 0.22 4.83 5.13 -5.19 -0.03 4.80 16 9 N -0.57 -13.27 2.08 -164.93 -0.34 -13.61 16 10 C -0.27 -7.29 8.18 -15.06 -0.12 -7.42 16 11 H 0.08 2.39 6.88 -52.49 -0.36 2.03 16 12 C 0.05 1.46 5.27 -17.43 -0.09 1.37 16 13 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 14 Si 0.86 21.19 25.19 -169.99 -4.28 16.91 16 15 H -0.28 -6.87 6.65 56.52 0.38 -6.50 16 16 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 17 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.17 3.34 3.39 -66.09 -0.22 3.12 16 19 C -0.13 -2.47 6.47 -24.55 -0.16 -2.63 16 20 C -0.12 -1.85 6.82 -25.07 -0.17 -2.02 16 21 C -0.12 -1.83 6.80 -25.61 -0.17 -2.01 16 22 C -0.13 -2.47 6.41 -25.61 -0.16 -2.63 16 23 O -0.21 -4.03 10.78 5.35 0.06 -3.97 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.17 2.66 8.06 -52.48 -0.42 2.23 16 32 H 0.10 2.31 3.45 -51.93 -0.18 2.13 16 33 H 0.07 1.29 7.92 -51.93 -0.41 0.88 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 35 H 0.06 1.04 7.84 -51.93 -0.41 0.64 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.65 6.63 -51.93 -0.34 1.30 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.86 6.92 -51.93 -0.36 1.50 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -30.95 341.76 -7.19 -38.13 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.14 Total: 2.83 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.28 Total: -8.47 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.31 Total: -50.58 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: 0.06 Total: -3.97 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.28 Total: 16.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.95 -7.19 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738331084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.847 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds