Wall clock time and date at job start Tue Mar 31 2020 00:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47180 * 2 1 4 4 C 1.50705 * 109.46907 * 119.99958 * 2 1 3 5 5 C 1.34326 * 126.44455 * 119.99635 * 4 2 1 6 6 N 1.34469 * 107.67048 * 179.76516 * 5 4 2 7 7 C 1.30251 * 108.70186 * 0.42750 * 6 5 4 8 8 C 1.50703 * 125.62413 * 179.83897 * 7 6 5 9 9 N 1.46500 * 109.47345 * 89.68730 * 8 7 6 10 10 C 1.36934 * 120.00031 * 270.00247 * 9 8 7 11 11 H 1.08001 * 119.99513 * 141.74067 * 10 9 8 12 12 C 1.38805 * 120.00261 * 321.74034 * 10 9 8 13 13 N 1.31617 * 120.00208 * 156.41003 * 12 10 9 14 14 Si 1.86802 * 120.00270 * 336.41284 * 12 10 9 15 15 H 1.48499 * 109.46804 * 95.12304 * 14 12 10 16 16 H 1.48493 * 109.47286 * 215.12497 * 14 12 10 17 17 H 1.48501 * 109.46588 * 335.12732 * 14 12 10 18 18 C 1.46500 * 119.99775 * 90.00397 * 9 8 7 19 19 C 1.55234 * 110.58140 * 240.10260 * 18 9 8 20 20 C 1.54890 * 102.58852 * 203.34093 * 19 18 9 21 21 C 1.54262 * 104.31489 * 37.92833 * 20 19 18 22 22 C 1.53876 * 106.59797 * 336.32715 * 21 20 19 23 23 O 1.33972 * 108.76193 * 359.57216 * 7 6 5 24 24 H 1.08998 * 109.47181 * 300.00309 * 1 2 3 25 25 H 1.09002 * 109.46947 * 59.99881 * 1 2 3 26 26 H 1.09004 * 109.47721 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47181 * 239.99691 * 2 1 3 28 28 H 1.09002 * 109.47277 * 299.99916 * 3 2 1 29 29 H 1.08998 * 109.47315 * 59.99773 * 3 2 1 30 30 H 1.09003 * 109.47192 * 179.97438 * 3 2 1 31 31 H 1.08004 * 126.16229 * 0.02562 * 5 4 2 32 32 H 1.09007 * 109.46588 * 329.69179 * 8 7 6 33 33 H 1.08998 * 109.47290 * 209.69478 * 8 7 6 34 34 H 0.97000 * 120.00628 * 179.97438 * 13 12 10 35 35 H 1.08999 * 110.43242 * 2.68187 * 18 9 8 36 36 H 1.09001 * 110.89929 * 85.04382 * 19 18 9 37 37 H 1.09001 * 110.76364 * 321.56781 * 19 18 9 38 38 H 1.08998 * 110.48159 * 279.18263 * 20 19 18 39 39 H 1.09001 * 110.48850 * 156.67822 * 20 19 18 40 40 H 1.08997 * 110.03525 * 95.61043 * 21 20 19 41 41 H 1.09001 * 110.03414 * 216.99225 * 21 20 19 42 42 H 1.09001 * 110.03224 * 119.28274 * 22 21 20 43 43 H 1.09002 * 110.03405 * 240.66752 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8076 -1.8070 1.2582 6 7 3.0322 -2.1156 2.5476 7 6 2.4128 -1.2500 3.2983 8 6 2.4058 -1.2410 4.8052 9 7 3.5314 -0.4407 5.2941 10 6 4.7420 -1.0350 5.5314 11 1 5.6562 -0.5138 5.2885 12 6 4.7942 -2.3072 6.0842 13 7 5.8553 -3.0630 5.8970 14 14 3.3584 -2.9466 7.0938 15 1 2.4608 -3.7492 6.2247 16 1 3.8698 -3.7980 8.1977 17 1 2.6033 -1.8008 7.6613 18 6 3.3616 0.9953 5.5290 19 6 4.3379 1.8127 4.6409 20 6 4.4634 3.1472 5.4171 21 6 4.4684 2.7262 6.9012 22 6 3.7679 1.3580 6.9723 23 8 1.7877 -0.3653 2.5099 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 3.1861 -2.3418 0.3996 32 1 2.4984 -2.2622 5.1750 33 1 1.4708 -0.8089 5.1617 34 1 5.8920 -3.9519 6.2835 35 1 2.3310 1.2932 5.3364 36 1 3.9149 1.9802 3.6504 37 1 5.3049 1.3146 4.5701 38 1 3.6107 3.7926 5.2065 39 1 5.3950 3.6516 5.1605 40 1 5.4935 2.6400 7.2615 41 1 3.9233 3.4571 7.4985 42 1 4.4530 0.6078 7.3671 43 1 2.8825 1.4243 7.6047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738331084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:45 Heat of formation + Delta-G solvation = 7.532926 kcal Electronic energy + Delta-G solvation = -22849.831615 eV Core-core repulsion = 19702.947109 eV Total energy + Delta-G solvation = -3146.884506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.13628 -39.48622 -36.82784 -36.19018 -35.48730 -33.68710 -31.08119 -29.41611 -28.65205 -28.07113 -27.78557 -24.71894 -23.52832 -22.89857 -21.38787 -21.13427 -20.70248 -18.84203 -17.75286 -17.38113 -17.28351 -16.81225 -16.24987 -15.97357 -15.56516 -15.07939 -14.79135 -14.58867 -14.24750 -14.20123 -14.08676 -14.02788 -13.21362 -13.05776 -12.86628 -12.61235 -12.50920 -12.22643 -12.17597 -12.16517 -12.05697 -11.95265 -11.92581 -11.81419 -11.67802 -11.30466 -11.18988 -11.13783 -10.61826 -9.54180 -8.88066 -8.19159 -5.60631 0.59084 1.30860 1.40388 1.50482 1.80841 1.88059 2.42452 3.01266 3.26210 3.36706 3.69663 3.91976 3.94231 3.97336 4.08357 4.14913 4.20080 4.40140 4.44226 4.51902 4.56715 4.72191 4.75638 4.80198 4.81822 4.85779 4.91445 4.92565 4.95180 5.05774 5.10757 5.19692 5.22108 5.29463 5.31349 5.38461 5.44924 5.47323 5.57026 5.63184 5.95405 6.22450 6.90926 7.02606 7.57616 7.96561 9.00001 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.007315 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.979681 B = 3826.671354 C = 5094.368827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 C -0.144 4.144 4 C -0.048 4.048 5 C -0.073 4.073 6 N -0.518 5.518 7 C 0.176 3.824 8 C 0.216 3.784 9 N -0.584 5.584 10 C -0.246 4.246 11 H 0.037 0.963 12 C -0.006 4.006 13 N -0.938 5.938 14 Si 0.922 3.078 15 H -0.279 1.279 16 H -0.304 1.304 17 H -0.238 1.238 18 C 0.162 3.838 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.133 4.133 23 O -0.205 6.205 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.121 0.879 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.194 0.806 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 11.872 -8.270 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 C -0.201 4.201 4 C -0.102 4.102 5 C -0.211 4.211 6 N -0.247 5.247 7 C -0.034 4.034 8 C 0.087 3.913 9 N -0.304 5.304 10 C -0.376 4.376 11 H 0.055 0.945 12 C -0.203 4.203 13 N -0.581 5.581 14 Si 0.750 3.250 15 H -0.207 1.207 16 H -0.232 1.232 17 H -0.161 1.161 18 C 0.057 3.943 19 C -0.170 4.170 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.172 4.172 23 O -0.092 6.092 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.211 0.789 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.006 11.293 -7.931 18.292 hybrid contribution 0.055 -0.771 0.148 0.787 sum -11.951 10.523 -7.783 17.724 Atomic orbital electron populations 1.21841 0.92396 1.02454 1.03254 1.19943 0.97300 0.95987 0.88965 1.21843 1.00786 0.94236 1.03246 1.24123 1.02875 0.98503 0.84680 1.23510 1.03398 0.99242 0.94940 1.70485 1.21950 1.28795 1.03477 1.28340 0.92184 0.85189 0.97646 1.20168 0.93329 0.98110 0.79663 1.44319 1.08827 1.05379 1.71881 1.18224 0.84340 0.99487 1.35507 0.94544 1.26000 0.98542 0.97045 0.98749 1.70022 1.33034 1.09404 1.45593 0.86153 0.80766 0.78965 0.79159 1.20663 1.23199 1.16088 1.21714 0.97675 0.81100 0.93830 1.22805 0.99406 0.96684 0.98110 1.22235 1.02136 0.95758 0.94707 1.22020 1.00161 0.96132 0.96804 1.22455 1.00391 0.97193 0.97205 1.84360 1.59132 1.48900 1.16784 0.93244 0.88855 0.92638 0.86093 0.88658 0.93346 0.93548 0.78913 0.90849 0.87601 0.92904 0.89871 0.93359 0.94676 0.89856 0.91689 0.93098 0.89818 0.93229 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.18 71.98 0.66 -1.81 16 2 C 0.00 -0.07 3.33 -11.54 -0.04 -0.11 16 3 C -0.14 -2.80 9.18 71.98 0.66 -2.14 16 4 C -0.05 -1.56 5.89 24.79 0.15 -1.41 16 5 C -0.07 -2.75 11.78 83.39 0.98 -1.76 16 6 N -0.52 -24.70 11.29 -303.83 -3.43 -28.13 16 7 C 0.18 7.80 7.93 88.34 0.70 8.50 16 8 C 0.22 9.44 5.13 85.63 0.44 9.88 16 9 N -0.58 -27.19 2.08 -675.71 -1.41 -28.60 16 10 C -0.25 -13.89 8.18 84.03 0.69 -13.21 16 11 H 0.04 2.35 6.88 -2.91 -0.02 2.33 16 12 C -0.01 -0.33 5.27 84.86 0.45 0.11 16 13 N -0.94 -59.90 13.97 21.65 0.30 -59.59 16 14 Si 0.92 45.16 25.19 68.60 1.73 46.88 16 15 H -0.28 -13.44 6.65 99.48 0.66 -12.78 16 16 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 17 H -0.24 -10.52 7.11 99.48 0.71 -9.82 16 18 C 0.16 6.16 3.39 46.19 0.16 6.31 16 19 C -0.13 -4.83 6.47 32.01 0.21 -4.63 16 20 C -0.11 -3.08 6.82 31.67 0.22 -2.87 16 21 C -0.11 -3.24 6.80 31.32 0.21 -3.03 16 22 C -0.13 -4.71 6.41 31.32 0.20 -4.51 16 23 O -0.20 -7.78 10.78 -3.78 -0.04 -7.82 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.12 1.98 8.11 -2.39 -0.02 1.96 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.19 5.93 8.06 -2.91 -0.02 5.91 16 32 H 0.07 3.54 3.45 -2.38 -0.01 3.54 16 33 H 0.11 3.75 7.92 -2.39 -0.02 3.73 16 34 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.08 2.76 7.84 -2.39 -0.02 2.74 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.03 1.57 6.63 -2.39 -0.02 1.56 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 42 H 0.05 2.13 6.92 -2.39 -0.02 2.11 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -72.63 341.76 3.76 -68.87 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.93 Total: 19.05 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.68 Total: -10.66 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.54 Total: -116.32 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.04 Total: -7.82 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.73 Total: 46.88 kcal Total: -72.63 3.76 -68.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738331084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.404 kcal (2) G-P(sol) polarization free energy of solvation -72.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds