Wall clock time and date at job start Tue Mar 31 2020 00:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46739 * 217.31835 * 3 2 1 5 5 C 1.52999 * 109.46774 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47232 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47232 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47080 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99950 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00284 * 179.97438 * 8 7 6 11 11 C 1.46957 * 120.59483 * 179.97438 * 10 8 7 12 12 C 1.53378 * 108.63600 * 235.24927 * 11 10 8 13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10 14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11 15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12 16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12 17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13 18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13 19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14 20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14 21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14 22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11 23 23 C 1.46973 * 120.59110 * 0.02618 * 10 8 7 24 24 H 4.44646 * 5.63378 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.46915 * 97.32464 * 3 2 1 26 26 H 1.08994 * 109.47341 * 337.31818 * 3 2 1 27 27 H 1.08997 * 109.46903 * 60.00622 * 4 3 2 28 28 H 1.08994 * 109.47190 * 300.00075 * 4 3 2 29 29 H 1.08997 * 109.47641 * 60.00264 * 5 4 3 30 30 H 1.09010 * 109.47457 * 300.00265 * 5 4 3 31 31 H 1.09005 * 109.47388 * 59.99758 * 6 5 4 32 32 H 1.08999 * 109.47114 * 299.99901 * 6 5 4 33 33 H 1.08997 * 109.46961 * 60.00215 * 7 6 5 34 34 H 1.08994 * 109.47261 * 299.99590 * 7 6 5 35 35 H 1.09004 * 109.60829 * 115.50719 * 11 10 8 36 36 H 1.08993 * 109.75563 * 355.08178 * 11 10 8 37 37 H 1.09001 * 109.60979 * 190.83526 * 12 11 10 38 38 H 1.08998 * 109.74677 * 70.41012 * 12 11 10 39 39 H 0.97000 * 120.00046 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.61298 * 64.25873 * 22 13 12 41 41 H 1.08995 * 109.61261 * 184.77395 * 22 13 12 42 42 H 1.08994 * 109.60538 * 244.49313 * 23 10 8 43 43 H 1.09004 * 109.60748 * 4.83428 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1482 0.8746 5 6 4.6854 1.1492 0.8741 6 6 5.1950 2.2963 1.7491 7 6 6.7249 2.2977 1.7480 8 6 7.2268 3.4279 2.6094 9 8 6.4383 4.1604 3.1687 10 7 8.5517 3.6248 2.7584 11 6 9.0553 4.7231 3.5948 12 6 10.0008 5.5876 2.7514 13 7 10.9678 4.7079 2.0799 14 6 12.3140 4.9085 2.2303 15 1 12.6926 5.3848 3.1226 16 6 13.1926 4.4942 1.2386 17 7 14.3639 3.9908 1.5655 18 14 12.7125 4.6515 -0.5597 19 1 13.2578 5.9189 -1.1087 20 1 13.2657 3.5033 -1.3219 21 1 11.2322 4.6571 -0.6781 22 6 10.4641 3.6130 1.2388 23 6 9.5187 2.7454 2.0863 24 1 -1.0501 -0.0004 0.0000 25 1 3.0093 0.1318 -1.0193 26 1 3.0098 -0.9473 0.3963 27 1 2.7922 1.0170 1.8938 28 1 2.7917 2.0961 0.4783 29 1 5.0484 1.2806 -0.1453 30 1 5.0497 0.2012 1.2701 31 1 4.8320 2.1645 2.7685 32 1 4.8308 3.2444 1.3535 33 1 7.0874 2.4298 0.7286 34 1 7.0895 1.3497 2.1434 35 1 9.5967 4.3145 4.4481 36 1 8.2214 5.3300 3.9472 37 1 10.5305 6.2877 3.3975 38 1 9.4286 6.1393 2.0056 39 1 14.9780 3.7017 0.8725 40 1 9.9220 4.0250 0.3877 41 1 11.2997 3.0087 0.8857 42 1 10.0930 2.1958 2.8319 43 1 8.9888 2.0436 1.4422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780946651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:15 Heat of formation + Delta-G solvation = 28.661711 kcal Electronic energy + Delta-G solvation = -21256.206382 eV Core-core repulsion = 18110.238089 eV Total energy + Delta-G solvation = -3145.968293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.79936 -37.23774 -36.56181 -34.09318 -33.93391 -31.86072 -31.28188 -30.53753 -27.92298 -26.76183 -23.95194 -23.22162 -22.72472 -21.28892 -20.47425 -18.61914 -18.31783 -17.15794 -16.33358 -16.12583 -15.63841 -15.31466 -14.79598 -14.53369 -14.30384 -14.13507 -13.78258 -13.65085 -13.36288 -13.02757 -12.70488 -12.29341 -12.19914 -12.15125 -11.90781 -11.58040 -11.33073 -11.23693 -10.97312 -10.82120 -10.69247 -10.50058 -10.40006 -10.37504 -10.36756 -10.20325 -9.52795 -9.43704 -8.73880 -8.23123 -7.04955 -6.13536 -3.32112 2.52585 2.55741 2.90814 3.29912 3.35291 3.45347 3.50451 4.05401 4.48267 4.58584 4.69046 4.76534 4.82620 4.91922 5.03771 5.17187 5.22151 5.36460 5.39491 5.49439 5.55295 5.60558 5.62019 5.69017 5.77403 5.78374 5.82404 5.90216 5.95614 6.05814 6.12052 6.15442 6.23621 6.28445 6.48688 6.55945 6.73085 6.93348 7.33444 7.78361 7.84579 8.21213 8.47200 8.84668 9.63095 10.03425 11.00800 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.003092 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.806569 B = 9052.670130 C = 9726.712625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.184 4.184 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.140 4.140 8 C 0.509 3.491 9 O -0.558 6.558 10 N -0.600 5.600 11 C 0.095 3.905 12 C 0.132 3.868 13 N -0.599 5.599 14 C -0.275 4.275 15 H 0.082 0.918 16 C 0.039 3.961 17 N -0.878 5.878 18 Si 0.834 3.166 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.258 1.258 22 C 0.131 3.869 23 C 0.086 3.914 24 H 0.216 0.784 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.655 -8.259 -2.196 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.140 4.140 7 C -0.180 4.180 8 C 0.297 3.703 9 O -0.438 6.438 10 N -0.333 5.333 11 C -0.029 4.029 12 C 0.006 3.994 13 N -0.323 5.323 14 C -0.402 4.402 15 H 0.100 0.900 16 C -0.163 4.163 17 N -0.517 5.517 18 Si 0.661 3.339 19 H -0.220 1.220 20 H -0.220 1.220 21 H -0.183 1.183 22 C 0.004 3.996 23 C -0.039 4.039 24 H 0.232 0.768 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.840 -7.929 -1.918 21.452 hybrid contribution -0.088 0.087 -1.219 1.226 sum -19.928 -7.842 -3.137 21.644 Atomic orbital electron populations 1.24916 0.96015 1.01207 1.01349 1.23262 0.94725 1.00217 1.00171 1.18815 0.84517 1.00281 1.01606 1.21543 0.95664 0.97945 1.00035 1.21633 0.94596 0.99071 1.00519 1.21323 0.93122 0.98839 1.00760 1.21694 0.97504 0.98045 1.00737 1.20676 0.81944 0.85905 0.81766 1.90641 1.54945 1.48456 1.49722 1.48067 1.05240 1.31528 1.48445 1.22170 0.97992 0.89072 0.93618 1.21346 0.90985 0.92087 0.95020 1.44297 1.02681 1.29392 1.55917 1.18769 0.79513 1.39754 1.02200 0.89999 1.25214 0.95054 0.98305 0.97685 1.70122 1.10516 1.37743 1.33347 0.87603 0.79752 0.77730 0.88787 1.21980 1.22018 1.18252 1.21776 0.95772 0.89912 0.92119 1.22580 0.91370 0.92889 0.97056 0.76760 0.89518 0.89531 0.91478 0.91469 0.91596 0.91629 0.91280 0.91262 0.89016 0.89093 0.91617 0.89774 0.90779 0.95669 0.92695 0.94998 0.90419 0.90939 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.81 19.25 29.55 0.57 -1.24 16 2 C -0.18 -1.69 13.34 -37.12 -0.50 -2.18 16 3 C -0.02 -0.11 5.70 -29.51 -0.17 -0.28 16 4 C -0.11 -0.90 5.17 -26.73 -0.14 -1.03 16 5 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 6 C -0.10 -1.08 4.50 -26.73 -0.12 -1.20 16 7 C -0.14 -1.60 4.04 -27.88 -0.11 -1.72 16 8 C 0.51 8.14 7.70 -10.98 -0.08 8.05 16 9 O -0.56 -10.57 15.39 5.55 0.09 -10.49 16 10 N -0.60 -10.11 2.95 -172.23 -0.51 -10.61 16 11 C 0.10 1.67 6.59 -3.60 -0.02 1.65 16 12 C 0.13 2.59 6.67 -3.60 -0.02 2.56 16 13 N -0.60 -13.65 2.71 -171.78 -0.47 -14.12 16 14 C -0.28 -7.34 9.84 -15.06 -0.15 -7.49 16 15 H 0.08 2.34 8.05 -52.49 -0.42 1.91 16 16 C 0.04 1.07 4.80 -17.43 -0.08 0.99 16 17 N -0.88 -25.56 13.97 55.49 0.78 -24.78 16 18 Si 0.83 20.35 26.46 -169.99 -4.50 15.85 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.26 -5.96 4.99 56.52 0.28 -5.68 16 22 C 0.13 2.65 4.58 -3.38 -0.02 2.63 16 23 C 0.09 1.38 6.52 -3.38 -0.02 1.36 16 24 H 0.22 1.07 7.80 -54.08 -0.42 0.64 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.09 0.96 7.72 -51.93 -0.40 0.56 16 34 H 0.09 0.89 7.91 -51.93 -0.41 0.48 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 37 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.03 0.65 6.78 -51.93 -0.35 0.30 16 41 H 0.08 1.67 5.59 -51.93 -0.29 1.38 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 0.95 5.91 -51.93 -0.31 0.65 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -31.79 347.10 -7.67 -39.46 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.28 Total: -1.56 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.01 Total: 1.02 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.20 Total: -49.51 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.50 Total: 15.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.79 -7.67 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780946651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.117 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds