Wall clock time and date at job start Tue Mar 31 2020 00:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46739 * 217.31835 * 3 2 1 5 5 C 1.52999 * 109.46774 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47232 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47232 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47080 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99950 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00284 * 179.97438 * 8 7 6 11 11 C 1.46957 * 120.59483 * 179.97438 * 10 8 7 12 12 C 1.53378 * 108.63600 * 235.24927 * 11 10 8 13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10 14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11 15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12 16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12 17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13 18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13 19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14 20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14 21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14 22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11 23 23 C 1.46973 * 120.59110 * 0.02618 * 10 8 7 24 24 H 4.44646 * 5.63378 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.46915 * 97.32464 * 3 2 1 26 26 H 1.08994 * 109.47341 * 337.31818 * 3 2 1 27 27 H 1.08997 * 109.46903 * 60.00622 * 4 3 2 28 28 H 1.08994 * 109.47190 * 300.00075 * 4 3 2 29 29 H 1.08997 * 109.47641 * 60.00264 * 5 4 3 30 30 H 1.09010 * 109.47457 * 300.00265 * 5 4 3 31 31 H 1.09005 * 109.47388 * 59.99758 * 6 5 4 32 32 H 1.08999 * 109.47114 * 299.99901 * 6 5 4 33 33 H 1.08997 * 109.46961 * 60.00215 * 7 6 5 34 34 H 1.08994 * 109.47261 * 299.99590 * 7 6 5 35 35 H 1.09004 * 109.60829 * 115.50719 * 11 10 8 36 36 H 1.08993 * 109.75563 * 355.08178 * 11 10 8 37 37 H 1.09001 * 109.60979 * 190.83526 * 12 11 10 38 38 H 1.08998 * 109.74677 * 70.41012 * 12 11 10 39 39 H 0.97000 * 120.00046 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.61298 * 64.25873 * 22 13 12 41 41 H 1.08995 * 109.61261 * 184.77395 * 22 13 12 42 42 H 1.08994 * 109.60538 * 244.49313 * 23 10 8 43 43 H 1.09004 * 109.60748 * 4.83428 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1482 0.8746 5 6 4.6854 1.1492 0.8741 6 6 5.1950 2.2963 1.7491 7 6 6.7249 2.2977 1.7480 8 6 7.2268 3.4279 2.6094 9 8 6.4383 4.1604 3.1687 10 7 8.5517 3.6248 2.7584 11 6 9.0553 4.7231 3.5948 12 6 10.0008 5.5876 2.7514 13 7 10.9678 4.7079 2.0799 14 6 12.3140 4.9085 2.2303 15 1 12.6926 5.3848 3.1226 16 6 13.1926 4.4942 1.2386 17 7 14.3639 3.9908 1.5655 18 14 12.7125 4.6515 -0.5597 19 1 13.2578 5.9189 -1.1087 20 1 13.2657 3.5033 -1.3219 21 1 11.2322 4.6571 -0.6781 22 6 10.4641 3.6130 1.2388 23 6 9.5187 2.7454 2.0863 24 1 -1.0501 -0.0004 0.0000 25 1 3.0093 0.1318 -1.0193 26 1 3.0098 -0.9473 0.3963 27 1 2.7922 1.0170 1.8938 28 1 2.7917 2.0961 0.4783 29 1 5.0484 1.2806 -0.1453 30 1 5.0497 0.2012 1.2701 31 1 4.8320 2.1645 2.7685 32 1 4.8308 3.2444 1.3535 33 1 7.0874 2.4298 0.7286 34 1 7.0895 1.3497 2.1434 35 1 9.5967 4.3145 4.4481 36 1 8.2214 5.3300 3.9472 37 1 10.5305 6.2877 3.3975 38 1 9.4286 6.1393 2.0056 39 1 14.9780 3.7017 0.8725 40 1 9.9220 4.0250 0.3877 41 1 11.2997 3.0087 0.8857 42 1 10.0930 2.1958 2.8319 43 1 8.9888 2.0436 1.4422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780946651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:14 Heat of formation + Delta-G solvation = 10.420126 kcal Electronic energy + Delta-G solvation = -21256.997397 eV Core-core repulsion = 18110.238089 eV Total energy + Delta-G solvation = -3146.759308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10314 -38.66803 -37.31700 -35.59869 -34.83703 -33.57119 -32.50074 -31.73094 -29.16510 -27.96443 -25.40868 -24.75432 -23.83013 -22.17169 -21.73393 -20.06348 -18.89448 -18.69934 -17.78149 -17.10839 -16.98394 -16.61086 -16.22621 -15.99331 -15.38808 -15.20445 -15.02127 -14.65282 -14.62061 -14.38326 -14.14857 -13.99116 -13.50014 -13.14115 -12.94596 -12.73765 -12.50010 -12.42334 -12.18584 -12.10925 -12.05533 -11.86848 -11.83794 -11.40973 -11.38503 -11.04071 -10.95133 -10.71714 -10.65314 -9.83751 -8.87261 -8.23015 -5.38793 1.36533 1.49068 1.55144 1.68095 1.89197 1.93552 2.06560 2.45352 2.94020 3.39021 3.48131 3.62861 3.98516 4.05919 4.13264 4.15250 4.27068 4.31659 4.36021 4.45882 4.55659 4.58705 4.60138 4.74966 4.76357 4.79107 4.87456 4.90377 4.96895 5.01707 5.02634 5.10956 5.19389 5.25202 5.29828 5.46889 5.52251 5.57398 5.85579 6.10824 6.52351 6.73175 6.90177 7.21451 7.62544 8.05205 8.94910 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.003092 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.806569 B = 9052.670130 C = 9726.712625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.015 4.015 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.099 4.099 7 C -0.134 4.134 8 C 0.505 3.495 9 O -0.592 6.592 10 N -0.607 5.607 11 C 0.104 3.896 12 C 0.133 3.867 13 N -0.613 5.613 14 C -0.267 4.267 15 H 0.048 0.952 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.901 3.099 19 H -0.306 1.306 20 H -0.291 1.291 21 H -0.235 1.235 22 C 0.123 3.877 23 C 0.097 3.903 24 H 0.239 0.761 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.628 -9.888 -3.714 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.051 4.051 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.137 4.137 7 C -0.174 4.174 8 C 0.296 3.704 9 O -0.473 6.473 10 N -0.339 5.339 11 C -0.021 4.021 12 C 0.007 3.993 13 N -0.337 5.337 14 C -0.396 4.396 15 H 0.066 0.934 16 C -0.209 4.209 17 N -0.568 5.568 18 Si 0.728 3.272 19 H -0.235 1.235 20 H -0.217 1.217 21 H -0.159 1.159 22 C -0.002 4.002 23 C -0.027 4.027 24 H 0.256 0.744 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.864 -9.570 -3.449 24.114 hybrid contribution 0.463 0.652 -0.642 1.025 sum -21.401 -8.919 -4.091 23.543 Atomic orbital electron populations 1.25705 0.97068 1.00532 1.00703 1.23922 0.95880 1.00939 1.00881 1.18881 0.83638 1.00481 1.02120 1.21480 0.95952 0.97787 0.99650 1.21565 0.94147 0.98504 1.00649 1.21276 0.92723 0.99198 1.00496 1.21790 0.97766 0.97046 1.00756 1.21525 0.81070 0.86423 0.81423 1.90631 1.55597 1.49979 1.51138 1.48176 1.05915 1.31354 1.48429 1.21939 0.97458 0.89386 0.93303 1.21401 0.90684 0.92181 0.95047 1.44411 1.01685 1.31033 1.56578 1.18676 0.81587 1.38381 1.00938 0.93404 1.25709 0.95201 0.98786 1.01228 1.70199 1.12103 1.40095 1.34419 0.86562 0.80594 0.76689 0.83402 1.23511 1.21749 1.15863 1.21875 0.96183 0.89521 0.92657 1.22474 0.90914 0.92365 0.96943 0.74423 0.88439 0.88269 0.92340 0.92558 0.90291 0.89976 0.92700 0.93075 0.86975 0.86386 0.91888 0.89506 0.91105 0.95429 0.92744 0.94402 0.91810 0.91355 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.39 19.25 74.32 1.43 -1.96 16 2 C -0.22 -3.66 13.34 31.13 0.42 -3.25 16 3 C -0.01 -0.18 5.70 28.79 0.16 -0.02 16 4 C -0.11 -1.53 5.17 30.60 0.16 -1.37 16 5 C -0.11 -1.36 5.21 30.59 0.16 -1.20 16 6 C -0.10 -1.83 4.50 30.59 0.14 -1.70 16 7 C -0.13 -2.53 4.04 29.85 0.12 -2.41 16 8 C 0.50 14.82 7.70 87.66 0.67 15.50 16 9 O -0.59 -21.63 15.39 -3.05 -0.05 -21.68 16 10 N -0.61 -18.90 2.95 -817.21 -2.41 -21.30 16 11 C 0.10 3.52 6.59 86.42 0.57 4.09 16 12 C 0.13 5.11 6.67 86.42 0.58 5.69 16 13 N -0.61 -27.43 2.71 -697.41 -1.89 -29.31 16 14 C -0.27 -14.43 9.84 84.04 0.83 -13.61 16 15 H 0.05 2.85 8.05 -2.91 -0.02 2.83 16 16 C -0.01 -0.61 4.80 84.86 0.41 -0.20 16 17 N -0.93 -54.98 13.97 21.65 0.30 -54.67 16 18 Si 0.90 42.10 26.46 68.60 1.82 43.92 16 19 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.24 -9.99 4.99 99.48 0.50 -9.49 16 22 C 0.12 4.68 4.58 86.55 0.40 5.08 16 23 C 0.10 2.81 6.52 86.55 0.56 3.37 16 24 H 0.24 1.93 7.80 -4.41 -0.03 1.89 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 32 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 33 H 0.11 1.74 7.72 -2.39 -0.02 1.73 16 34 H 0.12 1.66 7.91 -2.39 -0.02 1.64 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.92 7.00 -2.39 -0.02 2.90 16 37 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16 40 H 0.04 1.41 6.78 -2.39 -0.02 1.39 16 41 H 0.06 2.61 5.59 -2.39 -0.01 2.60 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.12 2.42 5.91 -2.39 -0.01 2.40 16 Total: -1.00 -69.81 347.10 5.13 -64.68 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.75 Total: 10.37 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 6.60 Total: 8.01 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -3.99 Total: -105.29 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.82 Total: 43.92 kcal Total: -69.81 5.13 -64.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780946651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.098 kcal (2) G-P(sol) polarization free energy of solvation -69.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds