Wall clock time and date at job start Tue Mar 31 2020 00:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47302 * 345.03202 * 3 2 1 5 5 C 1.52999 * 109.46870 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46695 * 180.02562 * 5 4 3 7 7 N 1.46509 * 109.47132 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99865 * 180.02562 * 7 6 5 9 9 O 1.21585 * 120.00642 * 5.07018 * 8 7 6 10 10 N 1.34775 * 119.99548 * 185.07796 * 8 7 6 11 11 C 1.46924 * 120.63159 * 174.96204 * 10 8 7 12 12 C 1.53200 * 108.89456 * 233.55608 * 11 10 8 13 13 C 1.53074 * 109.29270 * 305.57637 * 12 11 10 14 14 C 1.50697 * 109.43927 * 181.23706 * 13 12 11 15 15 H 1.08005 * 119.99998 * 239.79855 * 14 13 12 16 16 C 1.37872 * 120.00220 * 59.79272 * 14 13 12 17 17 N 1.31509 * 119.99991 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00067 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47525 * 60.00300 * 18 16 14 20 20 H 1.48504 * 109.47463 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47380 * 300.00391 * 18 16 14 22 22 C 1.53041 * 109.65925 * 61.15251 * 13 12 11 23 23 C 1.46925 * 120.63097 * 354.97832 * 10 8 7 24 24 H 4.44656 * 5.63301 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.46682 * 225.03587 * 3 2 1 26 26 H 1.08996 * 109.46862 * 105.03291 * 3 2 1 27 27 H 1.08998 * 109.46974 * 59.99769 * 4 3 2 28 28 H 1.08998 * 109.47089 * 300.00626 * 4 3 2 29 29 H 1.08989 * 109.47131 * 59.99987 * 5 4 3 30 30 H 1.09002 * 109.46987 * 299.99407 * 5 4 3 31 31 H 1.09005 * 109.47391 * 59.99816 * 6 5 4 32 32 H 1.09003 * 109.47299 * 299.99860 * 6 5 4 33 33 H 0.97000 * 119.99583 * 0.02562 * 7 6 5 34 34 H 1.09003 * 109.58820 * 353.41568 * 11 10 8 35 35 H 1.09006 * 109.59033 * 113.69984 * 11 10 8 36 36 H 1.08999 * 109.49598 * 65.38684 * 12 11 10 37 37 H 1.09001 * 109.49618 * 185.48286 * 12 11 10 38 38 H 1.08997 * 109.34585 * 301.12589 * 13 12 11 39 39 H 0.97005 * 120.00365 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.49614 * 178.74639 * 22 13 12 41 41 H 1.08998 * 109.52116 * 58.66541 * 22 13 12 42 42 H 1.08998 * 109.59207 * 246.15572 * 23 10 8 43 43 H 1.09002 * 109.59022 * 6.44498 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1568 -1.3927 0.3726 5 6 4.6868 -1.3917 0.3732 6 6 5.1974 -2.7852 0.7451 7 7 6.6625 -2.7845 0.7451 8 6 7.3368 -3.9121 1.0455 9 8 6.7330 -4.9518 1.2262 10 7 8.6806 -3.8870 1.1460 11 6 9.4212 -5.0794 1.5798 12 6 10.3226 -4.7016 2.7596 13 6 11.2083 -3.5185 2.3606 14 6 12.1178 -3.1635 3.5085 15 1 12.0749 -2.1771 3.9464 16 6 13.0047 -4.0978 3.9999 17 7 13.0572 -5.2987 3.4666 18 14 14.1326 -3.6574 5.4223 19 1 13.3155 -3.2821 6.6041 20 1 14.9837 -4.8267 5.7596 21 1 14.9957 -2.5131 5.0338 22 6 10.3316 -2.3132 2.0131 23 6 9.4327 -2.6666 0.8239 24 1 -1.0497 -0.0004 0.0003 25 1 3.0090 0.7271 0.7271 26 1 3.0092 0.2674 -0.9925 27 1 2.7937 -2.1191 -0.3545 28 1 2.7935 -1.6594 1.3650 29 1 5.0493 -0.6654 1.1004 30 1 5.0503 -1.1249 -0.6192 31 1 4.8347 -3.5113 0.0175 32 1 4.8338 -3.0525 1.7373 33 1 7.1470 -1.9725 0.5289 34 1 8.7188 -5.8532 1.8899 35 1 10.0326 -5.4495 0.7568 36 1 9.7059 -4.4203 3.6131 37 1 10.9480 -5.5533 3.0269 38 1 11.8085 -3.7932 1.4933 39 1 13.6814 -5.9560 3.8120 40 1 10.9653 -1.4660 1.7510 41 1 9.7131 -2.0530 2.8720 42 1 10.0470 -2.8384 -0.0599 43 1 8.7378 -1.8489 0.6327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781814323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:19 Heat of formation + Delta-G solvation = 3.580550 kcal Electronic energy + Delta-G solvation = -21148.392391 eV Core-core repulsion = 18001.336498 eV Total energy + Delta-G solvation = -3147.055894 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.92644 -37.25886 -36.48279 -34.64760 -33.52929 -32.40201 -31.01474 -30.16274 -28.64824 -26.13394 -24.19195 -22.91563 -22.12250 -21.61735 -20.12433 -18.81149 -18.37907 -17.60604 -16.32935 -16.21559 -15.90300 -15.07848 -14.66088 -14.54315 -14.35360 -13.97350 -13.70821 -13.25212 -13.05164 -12.80530 -12.63470 -12.35662 -11.97315 -11.96369 -11.85592 -11.54903 -11.10041 -11.05673 -10.91352 -10.67990 -10.49405 -10.41937 -10.40535 -10.05288 -9.74556 -9.54505 -9.18444 -8.96895 -8.85599 -8.35527 -7.86526 -6.00838 -4.07790 2.49010 2.53657 3.04222 3.30333 3.35680 3.37731 3.60569 4.01618 4.24789 4.41675 4.58837 4.62505 4.90193 5.08974 5.21772 5.28598 5.30223 5.39196 5.44253 5.60570 5.70909 5.76113 5.77042 5.85566 5.96555 5.98320 6.08370 6.30040 6.43483 6.50728 6.62462 6.69228 6.83464 6.98852 7.16900 7.25825 7.31207 7.51357 7.71953 7.94089 8.07274 8.34227 8.41137 8.95226 8.98004 9.57121 11.04418 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033709 B = 0.002762 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.437320 B =10133.337062 C =10549.651619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.185 4.185 3 C -0.014 4.014 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.139 3.861 7 N -0.754 5.754 8 C 0.704 3.296 9 O -0.602 6.602 10 N -0.619 5.619 11 C 0.126 3.874 12 C -0.123 4.123 13 C 0.049 3.951 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.124 4.124 23 C 0.113 3.887 24 H 0.216 0.784 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.394 0.606 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 9.702 -8.064 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.185 4.185 3 C -0.050 4.050 4 C -0.149 4.149 5 C -0.170 4.170 6 C 0.014 3.986 7 N -0.413 5.413 8 C 0.406 3.594 9 O -0.481 6.481 10 N -0.355 5.355 11 C 0.004 3.996 12 C -0.162 4.162 13 C 0.031 3.969 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.162 4.162 23 C -0.010 4.010 24 H 0.233 0.767 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.085 8.746 -7.895 20.754 hybrid contribution 0.691 0.687 0.716 1.209 sum -16.394 9.433 -7.179 20.231 Atomic orbital electron populations 1.24919 0.96024 1.00848 1.01382 1.23198 0.94662 1.00424 1.00229 1.18770 0.84614 0.98518 1.03134 1.21435 0.94558 0.96017 1.02891 1.21803 0.95447 0.97092 1.02617 1.21098 0.79120 0.96530 1.01815 1.45284 1.06750 1.12466 1.76805 1.15872 0.81849 0.83611 0.78104 1.90860 1.67880 1.30414 1.58987 1.47451 1.03641 1.14519 1.69904 1.21764 0.94144 0.85520 0.98123 1.22036 0.96536 1.03308 0.94274 1.18621 0.91964 0.89641 0.96678 1.21143 1.19027 0.98431 1.16636 0.92824 1.24965 0.97102 0.95075 0.96855 1.69833 1.37015 1.04299 1.41694 0.86677 0.80732 0.77799 0.82872 1.20365 1.21316 1.20353 1.22010 0.97715 1.00744 0.95721 1.21707 0.94562 0.85545 0.99173 0.76746 0.89403 0.89454 0.91124 0.91083 0.90933 0.91039 0.91839 0.91914 0.76909 0.90640 0.92617 0.94430 0.87816 0.95504 0.92885 0.92183 0.92906 0.91939 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.69 19.25 29.55 0.57 -1.12 16 2 C -0.19 -1.59 13.35 -37.12 -0.50 -2.09 16 3 C -0.01 -0.09 5.70 -29.51 -0.17 -0.26 16 4 C -0.11 -0.78 5.17 -26.73 -0.14 -0.92 16 5 C -0.13 -0.97 5.33 -26.73 -0.14 -1.11 16 6 C 0.14 1.56 5.68 -4.04 -0.02 1.54 16 7 N -0.75 -10.19 5.47 -65.22 -0.36 -10.54 16 8 C 0.70 12.89 8.30 -86.92 -0.72 12.17 16 9 O -0.60 -13.16 15.79 5.29 0.08 -13.08 16 10 N -0.62 -11.39 2.97 -178.49 -0.53 -11.92 16 11 C 0.13 2.60 6.41 -3.71 -0.02 2.57 16 12 C -0.12 -2.86 5.16 -26.59 -0.14 -3.00 16 13 C 0.05 1.17 2.06 -91.71 -0.19 0.98 16 14 C -0.51 -13.64 8.56 -34.44 -0.29 -13.94 16 15 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.76 11.30 55.43 0.63 -24.13 16 18 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.12 -2.36 5.30 -26.61 -0.14 -2.50 16 23 C 0.11 1.80 6.43 -3.71 -0.02 1.78 16 24 H 0.22 0.99 7.80 -54.10 -0.42 0.57 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.14 -51.94 -0.42 0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.39 4.37 5.93 -40.82 -0.24 4.12 16 34 H 0.08 1.60 7.03 -51.93 -0.37 1.23 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.73 5.56 -51.93 -0.29 0.44 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -31.48 350.79 -9.03 -40.51 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.09 Total: 2.30 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.02 Total: -4.32 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.26 Total: -46.60 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.48 -9.03 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781814323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.092 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds