Wall clock time and date at job start Tue Mar 31 2020 00:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 C 1.50695 * 109.47548 * 120.00459 * 2 1 3 5 5 C 1.34334 * 126.44449 * 119.99541 * 4 2 1 6 6 N 1.34474 * 107.67182 * 180.02562 * 5 4 2 7 7 C 1.30262 * 108.69802 * 359.97438 * 6 5 4 8 8 C 1.50701 * 125.61925 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.47042 * 90.02788 * 8 7 6 10 10 C 1.46847 * 110.99982 * 189.99790 * 9 8 7 11 11 C 1.53034 * 109.51345 * 185.84805 * 10 9 8 12 12 C 1.53123 * 109.27992 * 300.80438 * 11 10 9 13 13 C 1.50693 * 109.57574 * 177.60215 * 12 11 10 14 14 H 1.08007 * 120.00278 * 240.29676 * 13 12 11 15 15 C 1.37885 * 120.00186 * 60.30132 * 13 12 11 16 16 N 1.31511 * 119.99511 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00097 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47446 * 59.99537 * 17 15 13 19 19 H 1.48493 * 109.46749 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46581 * 299.99211 * 17 15 13 21 21 C 1.53127 * 109.15019 * 57.67185 * 12 11 10 22 22 C 1.46843 * 110.99970 * 314.21155 * 9 8 7 23 23 O 1.33971 * 108.76185 * 0.23576 * 7 6 5 24 24 H 1.09003 * 109.46688 * 299.99567 * 1 2 3 25 25 H 1.08996 * 109.47707 * 59.99218 * 1 2 3 26 26 H 1.08997 * 109.47275 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46688 * 240.00433 * 2 1 3 28 28 H 1.09001 * 109.47093 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47081 * 300.00358 * 3 2 1 30 30 H 1.08997 * 109.46793 * 60.00185 * 3 2 1 31 31 H 1.07996 * 126.16584 * 359.97438 * 5 4 2 32 32 H 1.08997 * 109.47013 * 330.02615 * 8 7 6 33 33 H 1.09001 * 109.47015 * 210.03489 * 8 7 6 34 34 H 1.09002 * 109.46481 * 305.85957 * 10 9 8 35 35 H 1.08994 * 109.46283 * 65.83811 * 10 9 8 36 36 H 1.08997 * 109.50952 * 60.75924 * 11 10 9 37 37 H 1.08998 * 109.50459 * 180.87821 * 11 10 9 38 38 H 1.09003 * 109.53012 * 297.76758 * 12 11 10 39 39 H 0.96998 * 119.99701 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.49981 * 182.39822 * 21 12 11 41 41 H 1.08998 * 109.53089 * 62.30397 * 21 12 11 42 42 H 1.08993 * 109.46313 * 294.17341 * 22 9 8 43 43 H 1.09000 * 109.46480 * 54.15451 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8078 -1.8071 1.2579 6 7 3.0278 -2.1192 2.5472 7 6 2.4135 -1.2499 3.2980 8 6 2.4063 -1.2413 4.8050 9 7 3.5349 -0.4392 5.2955 10 6 3.7030 -0.5987 6.7456 11 6 4.7888 0.3583 7.2426 12 6 6.1036 0.0500 6.5208 13 6 7.1629 1.0267 6.9620 14 1 7.6364 1.6735 6.2381 15 6 7.5278 1.0948 8.2900 16 7 6.9509 0.3076 9.1715 17 14 8.8404 2.3060 8.8371 18 1 8.4044 3.6882 8.5136 19 1 9.0476 2.1830 10.3023 20 1 10.1125 2.0099 8.1303 21 6 5.8887 0.1762 5.0099 22 6 4.7708 -0.7755 4.5774 23 8 1.7843 -0.3680 2.5098 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1856 -2.3422 0.3992 32 1 2.4985 -2.2626 5.1746 33 1 1.4712 -0.8092 5.1614 34 1 2.7621 -0.3726 7.2473 35 1 3.9949 -1.6253 6.9666 36 1 4.4914 1.3860 7.0342 37 1 4.9244 0.2288 8.3163 38 1 6.4214 -0.9648 6.7601 39 1 7.2073 0.3557 10.1057 40 1 6.8099 -0.0836 4.4885 41 1 5.6090 1.2010 4.7659 42 1 5.0575 -1.8013 4.8086 43 1 4.6057 -0.6775 3.5045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782089168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:18 Heat of formation + Delta-G solvation = 9.873652 kcal Electronic energy + Delta-G solvation = -22044.631296 eV Core-core repulsion = 18897.848292 eV Total energy + Delta-G solvation = -3146.783004 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.31849 -38.29468 -35.94069 -34.68626 -34.03679 -31.67345 -30.09679 -29.22276 -27.46447 -26.91691 -24.72070 -22.90268 -22.29979 -21.82720 -21.13267 -20.24751 -18.57050 -16.86920 -16.77960 -16.22846 -15.59029 -15.04540 -14.80086 -14.45162 -14.32408 -14.07487 -13.41561 -13.37933 -13.12439 -12.76201 -12.49319 -12.38290 -12.15971 -11.90552 -11.73785 -11.53592 -11.44898 -11.31641 -11.10563 -10.91892 -10.75469 -10.47443 -10.39554 -10.18897 -9.98873 -9.42679 -8.94181 -8.70987 -8.67076 -8.26819 -7.83951 -5.94729 -3.99628 1.47101 2.65015 2.73151 3.35145 3.39368 3.42502 4.03200 4.39871 4.46835 4.49362 4.62970 4.77431 4.99002 5.10962 5.32750 5.33914 5.35831 5.44794 5.52475 5.58061 5.58615 5.74724 5.79039 5.90312 5.92783 5.97593 6.08908 6.13607 6.19564 6.30090 6.40486 6.56719 6.66592 6.88837 7.07148 7.13934 7.39272 7.57106 7.60224 7.81948 7.83038 8.07505 8.16772 8.51331 9.03569 9.64465 11.11652 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.003657 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.437653 B = 7653.988814 C = 8044.329661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.006 4.006 3 C -0.150 4.150 4 C -0.046 4.046 5 C -0.042 4.042 6 N -0.481 5.481 7 C 0.209 3.791 8 C 0.144 3.856 9 N -0.531 5.531 10 C 0.058 3.942 11 C -0.104 4.104 12 C 0.048 3.952 13 C -0.510 4.510 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.105 4.105 22 C 0.060 3.940 23 O -0.189 6.189 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.179 0.821 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.029 0.971 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.022 0.978 39 H 0.260 0.740 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 -2.206 -15.677 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 C -0.208 4.208 4 C -0.100 4.100 5 C -0.181 4.181 6 N -0.210 5.210 7 C 0.002 3.998 8 C 0.016 3.984 9 N -0.258 5.258 10 C -0.069 4.069 11 C -0.142 4.142 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.143 4.143 22 C -0.067 4.067 23 O -0.075 6.075 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.196 0.804 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.036 -2.222 -15.295 20.219 hybrid contribution 0.576 0.247 0.135 0.641 sum -12.460 -1.975 -15.160 19.722 Atomic orbital electron populations 1.21876 0.93646 1.02395 1.02691 1.19703 0.96363 0.96088 0.90310 1.21885 1.01801 0.94383 1.02685 1.23383 1.03472 0.99074 0.84078 1.23036 1.02259 0.97688 0.95116 1.70514 1.21620 1.26857 1.02059 1.26138 0.92523 0.85321 0.95808 1.20551 0.98032 0.98874 0.80947 1.62282 1.03981 1.53396 1.06102 1.22334 1.00281 0.99520 0.84734 1.21676 0.93216 0.96233 1.03048 1.18688 0.92927 0.96938 0.88515 1.21174 1.20221 1.20380 0.93072 0.92832 1.24964 0.96414 0.95786 0.96825 1.69856 1.42417 1.38632 1.02289 0.86689 0.82322 0.81797 0.77361 1.20322 1.21372 1.20385 1.21684 0.94751 0.97965 0.99908 1.22198 0.89770 0.98034 0.96737 1.84387 1.58624 1.48405 1.16091 0.91993 0.91572 0.92296 0.88148 0.92003 0.91618 0.91852 0.80368 0.90881 0.88356 0.92148 0.95283 0.93672 0.88632 0.96006 0.93044 0.93181 0.92678 0.95086 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.18 37.16 0.34 -0.78 16 2 C -0.01 -0.05 3.33 -91.77 -0.31 -0.36 16 3 C -0.15 -1.30 9.18 37.16 0.34 -0.96 16 4 C -0.05 -0.58 5.89 -35.69 -0.21 -0.79 16 5 C -0.04 -0.56 11.79 -17.77 -0.21 -0.77 16 6 N -0.48 -7.75 10.35 -11.10 -0.11 -7.86 16 7 C 0.21 3.29 6.13 -12.94 -0.08 3.22 16 8 C 0.14 2.19 5.90 -4.98 -0.03 2.16 16 9 N -0.53 -9.77 4.80 -236.13 -1.13 -10.90 16 10 C 0.06 1.12 5.42 -3.84 -0.02 1.10 16 11 C -0.10 -2.44 5.12 -26.65 -0.14 -2.57 16 12 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 13 C -0.51 -14.21 8.56 -34.44 -0.29 -14.51 16 14 H 0.05 1.48 7.75 -52.48 -0.41 1.07 16 15 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 16 N -0.89 -25.47 11.37 55.43 0.63 -24.84 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.11 -2.34 5.32 -26.64 -0.14 -2.48 16 22 C 0.06 1.19 4.94 -3.83 -0.02 1.17 16 23 O -0.19 -2.83 10.78 5.36 0.06 -2.78 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.03 8.12 -51.93 -0.42 0.60 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.10 2.48 6.17 -51.93 -0.32 2.16 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.11 5.97 -51.93 -0.31 0.80 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -30.24 342.80 -8.83 -39.06 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.35 Total: -1.34 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.06 Total: -12.96 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.62 Total: -43.61 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: 0.06 Total: -2.78 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.24 -8.83 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782089168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.935 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds