Wall clock time and date at job start Tue Mar 31 2020 00:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 C 1.50695 * 109.47548 * 120.00459 * 2 1 3 5 5 C 1.34334 * 126.44449 * 119.99541 * 4 2 1 6 6 N 1.34474 * 107.67182 * 180.02562 * 5 4 2 7 7 C 1.30262 * 108.69802 * 359.97438 * 6 5 4 8 8 C 1.50701 * 125.61925 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.47042 * 90.02788 * 8 7 6 10 10 C 1.46847 * 110.99982 * 189.99790 * 9 8 7 11 11 C 1.53034 * 109.51345 * 185.84805 * 10 9 8 12 12 C 1.53123 * 109.27992 * 300.80438 * 11 10 9 13 13 C 1.50693 * 109.57574 * 177.60215 * 12 11 10 14 14 H 1.08007 * 120.00278 * 240.29676 * 13 12 11 15 15 C 1.37885 * 120.00186 * 60.30132 * 13 12 11 16 16 N 1.31511 * 119.99511 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00097 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47446 * 59.99537 * 17 15 13 19 19 H 1.48493 * 109.46749 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46581 * 299.99211 * 17 15 13 21 21 C 1.53127 * 109.15019 * 57.67185 * 12 11 10 22 22 C 1.46843 * 110.99970 * 314.21155 * 9 8 7 23 23 O 1.33971 * 108.76185 * 0.23576 * 7 6 5 24 24 H 1.09003 * 109.46688 * 299.99567 * 1 2 3 25 25 H 1.08996 * 109.47707 * 59.99218 * 1 2 3 26 26 H 1.08997 * 109.47275 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46688 * 240.00433 * 2 1 3 28 28 H 1.09001 * 109.47093 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47081 * 300.00358 * 3 2 1 30 30 H 1.08997 * 109.46793 * 60.00185 * 3 2 1 31 31 H 1.07996 * 126.16584 * 359.97438 * 5 4 2 32 32 H 1.08997 * 109.47013 * 330.02615 * 8 7 6 33 33 H 1.09001 * 109.47015 * 210.03489 * 8 7 6 34 34 H 1.09002 * 109.46481 * 305.85957 * 10 9 8 35 35 H 1.08994 * 109.46283 * 65.83811 * 10 9 8 36 36 H 1.08997 * 109.50952 * 60.75924 * 11 10 9 37 37 H 1.08998 * 109.50459 * 180.87821 * 11 10 9 38 38 H 1.09003 * 109.53012 * 297.76758 * 12 11 10 39 39 H 0.96998 * 119.99701 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.49981 * 182.39822 * 21 12 11 41 41 H 1.08998 * 109.53089 * 62.30397 * 21 12 11 42 42 H 1.08993 * 109.46313 * 294.17341 * 22 9 8 43 43 H 1.09000 * 109.46480 * 54.15451 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8078 -1.8071 1.2579 6 7 3.0278 -2.1192 2.5472 7 6 2.4135 -1.2499 3.2980 8 6 2.4063 -1.2413 4.8050 9 7 3.5349 -0.4392 5.2955 10 6 3.7030 -0.5987 6.7456 11 6 4.7888 0.3583 7.2426 12 6 6.1036 0.0500 6.5208 13 6 7.1629 1.0267 6.9620 14 1 7.6364 1.6735 6.2381 15 6 7.5278 1.0948 8.2900 16 7 6.9509 0.3076 9.1715 17 14 8.8404 2.3060 8.8371 18 1 8.4044 3.6882 8.5136 19 1 9.0476 2.1830 10.3023 20 1 10.1125 2.0099 8.1303 21 6 5.8887 0.1762 5.0099 22 6 4.7708 -0.7755 4.5774 23 8 1.7843 -0.3680 2.5098 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1856 -2.3422 0.3992 32 1 2.4985 -2.2626 5.1746 33 1 1.4712 -0.8092 5.1614 34 1 2.7621 -0.3726 7.2473 35 1 3.9949 -1.6253 6.9666 36 1 4.4914 1.3860 7.0342 37 1 4.9244 0.2288 8.3163 38 1 6.4214 -0.9648 6.7601 39 1 7.2073 0.3557 10.1057 40 1 6.8099 -0.0836 4.4885 41 1 5.6090 1.2010 4.7659 42 1 5.0575 -1.8013 4.8086 43 1 4.6057 -0.6775 3.5045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782089168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:18 Heat of formation + Delta-G solvation = -9.796733 kcal Electronic energy + Delta-G solvation = -22045.484268 eV Core-core repulsion = 18897.848292 eV Total energy + Delta-G solvation = -3147.635976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.38998 -39.90473 -36.76167 -35.97446 -35.60230 -33.53493 -31.69222 -30.64147 -28.40543 -28.08452 -26.43150 -24.18380 -23.59079 -23.43813 -22.43241 -21.22199 -20.39448 -18.51196 -17.94492 -17.77322 -16.72081 -16.41497 -16.22275 -15.96867 -15.49931 -15.30580 -14.89271 -14.47925 -14.30572 -14.26720 -14.04224 -13.71566 -13.34462 -13.11304 -13.08079 -12.84751 -12.70580 -12.56929 -12.29544 -12.26221 -12.17950 -12.06819 -11.96904 -11.91484 -11.45906 -11.39125 -10.84963 -10.69555 -10.38374 -9.74074 -9.29966 -8.07845 -6.20969 0.41076 1.42089 1.43370 1.51037 1.60462 1.68278 2.44398 2.90874 3.10858 3.19059 3.62362 3.91096 4.02737 4.09425 4.12470 4.17545 4.26597 4.35605 4.43779 4.47625 4.56169 4.67268 4.74416 4.75527 4.83458 4.86938 4.90893 4.91363 4.98442 5.04724 5.15697 5.17631 5.27480 5.30351 5.30626 5.36114 5.51927 5.61037 5.92511 5.95884 6.12281 6.21961 6.40470 6.73936 6.88750 7.46351 8.96862 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.003657 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.437653 B = 7653.988814 C = 8044.329661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.006 4.006 3 C -0.149 4.149 4 C -0.038 4.038 5 C -0.059 4.059 6 N -0.503 5.503 7 C 0.187 3.813 8 C 0.147 3.853 9 N -0.537 5.537 10 C 0.069 3.931 11 C -0.095 4.095 12 C 0.045 3.955 13 C -0.537 4.537 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.915 5.915 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.274 1.274 21 C -0.097 4.097 22 C 0.076 3.924 23 O -0.201 6.201 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.206 0.794 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.025 0.975 36 H 0.033 0.967 37 H 0.069 0.931 38 H -0.010 1.010 39 H 0.261 0.739 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.022 0.978 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 -1.821 -17.326 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 C -0.206 4.206 4 C -0.092 4.092 5 C -0.198 4.198 6 N -0.233 5.233 7 C -0.019 4.019 8 C 0.019 3.981 9 N -0.264 5.264 10 C -0.058 4.058 11 C -0.133 4.133 12 C 0.027 3.973 13 C -0.575 4.575 14 H 0.066 0.934 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.779 3.221 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.199 1.199 21 C -0.135 4.135 22 C -0.052 4.052 23 O -0.087 6.087 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.147 0.853 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.223 0.777 32 H 0.100 0.900 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.008 0.992 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.040 0.960 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.126 -1.835 -16.954 22.144 hybrid contribution 0.894 0.121 0.560 1.062 sum -13.233 -1.715 -16.394 21.138 Atomic orbital electron populations 1.21861 0.92622 1.02635 1.03151 1.19990 0.97169 0.95913 0.89389 1.21883 1.01153 0.94498 1.03090 1.24194 1.02154 0.98669 0.84151 1.23546 1.02819 0.98465 0.94941 1.70479 1.21897 1.27405 1.03537 1.26113 0.93755 0.86049 0.96031 1.20604 0.97350 0.99049 0.81055 1.62174 1.04210 1.54683 1.05306 1.22129 1.00065 0.97944 0.85678 1.21430 0.93898 0.96667 1.01332 1.18648 0.93400 0.94502 0.90751 1.21521 1.21351 1.21086 0.93526 0.93370 1.25715 0.98418 0.97436 0.96836 1.69987 1.43346 1.39662 1.02470 0.85690 0.79699 0.79662 0.77066 1.19705 1.20721 1.19899 1.21542 0.95910 0.98301 0.97781 1.21946 0.89669 0.96541 0.97051 1.84385 1.58698 1.48449 1.17179 0.93492 0.89176 0.92172 0.85314 0.92995 0.88995 0.93686 0.77682 0.90026 0.85802 0.89130 0.95641 0.94821 0.91274 0.99182 0.92950 0.93383 0.93316 0.95984 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.18 71.98 0.66 -1.15 16 2 C -0.01 -0.09 3.33 -11.54 -0.04 -0.13 16 3 C -0.15 -2.27 9.18 71.98 0.66 -1.61 16 4 C -0.04 -0.88 5.89 24.79 0.15 -0.74 16 5 C -0.06 -1.47 11.79 83.40 0.98 -0.49 16 6 N -0.50 -15.68 10.35 -303.82 -3.14 -18.82 16 7 C 0.19 5.69 6.13 88.34 0.54 6.24 16 8 C 0.15 4.25 5.90 85.56 0.51 4.75 16 9 N -0.54 -19.36 4.80 -900.96 -4.32 -23.68 16 10 C 0.07 2.62 5.42 86.32 0.47 3.09 16 11 C -0.09 -4.56 5.12 30.65 0.16 -4.41 16 12 C 0.05 2.38 2.16 -11.46 -0.02 2.35 16 13 C -0.54 -30.64 8.56 25.60 0.22 -30.42 16 14 H 0.05 2.72 7.75 -2.91 -0.02 2.70 16 15 C 0.01 0.83 5.31 84.66 0.45 1.28 16 16 N -0.92 -53.21 11.37 21.45 0.24 -52.97 16 17 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 C -0.10 -4.41 5.32 30.65 0.16 -4.25 16 22 C 0.08 3.00 4.94 86.33 0.43 3.42 16 23 O -0.20 -5.80 10.78 -3.75 -0.04 -5.84 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.13 1.19 8.11 -2.39 -0.02 1.17 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.21 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 33 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.09 2.91 8.12 -2.39 -0.02 2.90 16 35 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 3.69 6.17 -2.39 -0.01 3.67 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 2.42 5.97 -2.39 -0.01 2.40 16 Total: -1.00 -66.28 342.80 1.04 -65.24 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.96 Total: 11.74 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 5.32 Total: -22.05 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -7.22 Total: -95.47 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.04 Total: -5.84 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -66.28 1.04 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782089168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.442 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds