Wall clock time and date at job start Tue Mar 31 2020 00:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47008 * 2 1 4 4 N 1.34661 * 125.80173 * 265.02749 * 3 2 1 5 5 H 0.96999 * 124.84921 * 359.95703 * 4 3 2 6 6 C 1.36450 * 110.29715 * 179.97438 * 4 3 2 7 7 C 1.34491 * 108.85391 * 359.97438 * 6 4 3 8 8 C 1.36773 * 125.79984 * 84.71876 * 3 2 1 9 9 C 1.47262 * 126.94029 * 0.02562 * 8 3 2 10 10 O 1.21624 * 120.00344 * 318.25026 * 9 8 3 11 11 N 1.34782 * 119.99559 * 138.25197 * 9 8 3 12 12 C 1.46501 * 120.00031 * 4.98593 * 11 9 8 13 13 C 1.50701 * 109.47033 * 93.88479 * 12 11 9 14 14 H 1.08002 * 119.99753 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99801 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99659 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00105 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46850 * 90.00251 * 17 15 13 19 19 H 1.48497 * 109.46917 * 210.00158 * 17 15 13 20 20 H 1.48500 * 109.47307 * 330.00750 * 17 15 13 21 21 C 1.46505 * 119.99713 * 184.98924 * 11 9 8 22 22 C 1.52999 * 109.47438 * 84.45624 * 21 11 9 23 23 C 1.52999 * 109.46772 * 64.99845 * 22 21 11 24 24 C 1.52990 * 109.47087 * 185.00099 * 22 21 11 25 25 H 1.09004 * 109.47037 * 299.99852 * 1 2 3 26 26 H 1.09001 * 109.47451 * 59.99585 * 1 2 3 27 27 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47451 * 120.00414 * 2 1 3 29 29 H 1.09004 * 109.47037 * 240.00148 * 2 1 3 30 30 H 1.07996 * 125.57067 * 180.02562 * 6 4 3 31 31 H 1.08004 * 126.82865 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.46565 * 213.88145 * 12 11 9 33 33 H 1.08999 * 109.47176 * 333.88130 * 12 11 9 34 34 H 0.96993 * 119.99910 * 179.97438 * 16 15 13 35 35 H 1.08997 * 109.46861 * 204.45878 * 21 11 9 36 36 H 1.09002 * 109.46819 * 324.45720 * 21 11 9 37 37 H 1.09000 * 109.46710 * 305.00269 * 22 21 11 38 38 H 1.08999 * 109.47648 * 60.00111 * 23 22 21 39 39 H 1.09002 * 109.47267 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47199 * 300.00180 * 23 22 21 41 41 H 1.08998 * 109.47587 * 59.99818 * 24 22 21 42 42 H 1.09006 * 109.47212 * 180.02562 * 24 22 21 43 43 H 1.09005 * 109.47051 * 299.99811 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3841 2.1320 -1.0881 5 1 2.3523 1.8023 -1.9998 6 6 2.7920 3.3823 -0.7247 7 6 2.7076 3.4955 0.6128 8 6 2.2027 2.2092 1.1046 9 6 1.9355 1.8402 2.5050 10 8 0.9369 1.2056 2.7868 11 7 2.7976 2.2058 3.4744 12 6 3.9419 3.0621 3.1523 13 6 3.5761 4.5030 3.3993 14 1 2.5899 4.7557 3.7596 15 6 4.5003 5.4988 3.1641 16 7 4.1809 6.7564 3.3791 17 14 6.2059 5.0618 2.5401 18 1 6.2032 5.0563 1.0551 19 1 7.1843 6.0659 3.0297 20 1 6.5858 3.7159 3.0393 21 6 2.5905 1.7467 4.8502 22 6 3.1999 0.3537 5.0203 23 6 4.7176 0.4362 4.8453 24 6 2.8757 -0.1775 6.4179 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1270 4.1551 -1.4008 31 1 2.9582 4.3624 1.2062 32 1 4.7886 2.7890 3.7821 33 1 4.2110 2.9299 2.1044 34 1 4.8312 7.4569 3.2141 35 1 3.0705 2.4401 5.5407 36 1 1.5221 1.7042 5.0620 37 1 2.7837 -0.3189 4.2703 38 1 5.1338 1.1089 5.5952 39 1 5.1518 -0.5562 4.9661 40 1 4.9485 0.8148 3.8496 41 1 1.7945 -0.2363 6.5426 42 1 3.3103 -1.1698 6.5393 43 1 3.2919 0.4952 7.1679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795749004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:31 Heat of formation + Delta-G solvation = -7.019638 kcal Electronic energy + Delta-G solvation = -22999.667044 eV Core-core repulsion = 19852.151492 eV Total energy + Delta-G solvation = -3147.515552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.75740 -38.65436 -35.92301 -34.06231 -33.24103 -32.21352 -30.42710 -28.12809 -27.82385 -26.80754 -25.67253 -23.19275 -22.49693 -21.08906 -20.16599 -19.63942 -17.49810 -17.08496 -16.94260 -15.51778 -15.44137 -14.64761 -14.32579 -14.15780 -13.95832 -13.74564 -13.39272 -13.09473 -12.87353 -12.59724 -12.51484 -12.21565 -11.99252 -11.92539 -11.59490 -11.46414 -11.31662 -11.11178 -11.01407 -10.84396 -10.65178 -10.51043 -10.43435 -10.15522 -10.12213 -9.52567 -8.98091 -8.66397 -8.05546 -7.70296 -7.46571 -6.14820 -4.13388 2.44534 3.14904 3.22866 3.30812 3.32971 3.59642 4.01577 4.23093 4.33097 5.04888 5.16349 5.21124 5.27281 5.33315 5.47701 5.54086 5.58142 5.76646 5.78653 5.90424 5.98878 6.04975 6.05993 6.15626 6.17573 6.25597 6.32348 6.37280 6.45887 6.52934 6.61544 6.65743 6.74191 6.76435 6.91249 6.92797 7.44909 7.54915 7.56976 7.67029 7.94708 8.30572 8.58296 8.93306 9.19160 9.45796 10.97574 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.009065 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.011720 B = 3087.959301 C = 4776.110066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.072 3.928 4 N -0.558 5.558 5 H 0.406 0.594 6 C -0.046 4.046 7 C -0.141 4.141 8 C -0.211 4.211 9 C 0.593 3.407 10 O -0.573 6.573 11 N -0.583 5.583 12 C 0.202 3.798 13 C -0.530 4.530 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.892 5.892 17 Si 0.865 3.135 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.264 1.264 21 C 0.127 3.873 22 C -0.111 4.111 23 C -0.146 4.146 24 C -0.141 4.141 25 H 0.079 0.921 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.162 0.838 31 H 0.177 0.823 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 -12.127 -5.557 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.044 4.044 4 N -0.154 5.154 5 H 0.241 0.759 6 C -0.172 4.172 7 C -0.165 4.165 8 C -0.222 4.222 9 C 0.382 3.618 10 O -0.455 6.455 11 N -0.312 5.312 12 C 0.081 3.919 13 C -0.568 4.568 14 H 0.096 0.904 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.692 3.308 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.189 1.189 21 C 0.004 3.996 22 C -0.130 4.130 23 C -0.203 4.203 24 C -0.199 4.199 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.179 0.821 31 H 0.194 0.806 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.836 -12.241 -5.520 13.455 hybrid contribution 1.147 0.110 -0.827 1.418 sum 0.311 -12.131 -6.347 13.695 Atomic orbital electron populations 1.21752 0.94182 1.01348 1.03025 1.20031 0.96697 0.89642 1.02353 1.20056 1.03498 0.94734 0.86130 1.41422 1.53761 1.12267 1.07970 0.75863 1.21746 1.10614 0.87873 0.96953 1.23086 1.01319 0.98832 0.93215 1.20172 1.13410 0.96426 0.92156 1.17388 0.81971 0.78055 0.84351 1.90635 1.27760 1.43371 1.83743 1.47689 1.27544 1.48876 1.07094 1.20026 0.84452 0.90215 0.97226 1.21416 1.01509 0.88823 1.45056 0.90390 1.24844 0.98015 0.94797 0.95019 1.69903 1.35313 0.99413 1.48395 0.87003 0.85011 0.78827 0.79947 1.19696 1.21150 1.18877 1.21323 1.00823 0.93742 0.83726 1.21491 0.96217 0.97955 0.97355 1.21890 0.95377 1.00603 1.02466 1.21742 1.01293 1.00336 0.96514 0.90210 0.93643 0.92861 0.89873 0.92130 0.82069 0.80614 0.95212 0.93951 0.92502 0.90294 0.91104 0.91329 0.92681 0.93665 0.92159 0.92725 0.93107 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.89 37.16 0.37 -1.61 16 2 C -0.05 -0.68 5.89 -27.88 -0.16 -0.85 16 3 C 0.07 1.21 6.43 -81.88 -0.53 0.68 16 4 N -0.56 -7.92 5.90 -9.10 -0.05 -7.97 16 5 H 0.41 4.11 8.96 -40.82 -0.37 3.74 16 6 C -0.05 -0.75 11.89 -16.82 -0.20 -0.95 16 7 C -0.14 -2.89 8.66 -37.50 -0.32 -3.21 16 8 C -0.21 -4.31 5.34 -103.35 -0.55 -4.86 16 9 C 0.59 13.01 7.30 -12.59 -0.09 12.92 16 10 O -0.57 -13.10 15.00 5.26 0.08 -13.02 16 11 N -0.58 -12.53 2.19 -176.38 -0.39 -12.91 16 12 C 0.20 4.61 2.95 -5.19 -0.02 4.60 16 13 C -0.53 -13.98 7.77 -34.44 -0.27 -14.24 16 14 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 15 C 0.08 2.05 5.37 -17.82 -0.10 1.95 16 16 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 17 Si 0.87 19.99 27.47 -169.99 -4.67 15.32 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 21 C 0.13 2.42 4.85 -4.04 -0.02 2.40 16 22 C -0.11 -1.76 3.09 -90.63 -0.28 -2.04 16 23 C -0.15 -2.26 8.33 37.16 0.31 -1.95 16 24 C -0.14 -1.85 9.19 37.15 0.34 -1.51 16 25 H 0.08 1.34 6.78 -51.93 -0.35 0.99 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 31 H 0.18 4.13 5.39 -52.48 -0.28 3.85 16 32 H 0.03 0.68 5.52 -51.93 -0.29 0.39 16 33 H 0.04 0.98 4.73 -51.93 -0.25 0.73 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 36 H 0.07 1.38 7.53 -51.93 -0.39 0.99 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 1.03 6.25 -51.93 -0.32 0.71 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -30.56 341.16 -7.54 -38.09 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.90 Total: 9.02 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.52 Total: -8.68 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.33 Total: -45.88 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.56 -7.54 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795749004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.071 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds