Wall clock time and date at job start Tue Mar 31 2020 00:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47008 * 2 1 4 4 N 1.34661 * 125.80173 * 265.02749 * 3 2 1 5 5 H 0.96999 * 124.84921 * 359.95703 * 4 3 2 6 6 C 1.36450 * 110.29715 * 179.97438 * 4 3 2 7 7 C 1.34491 * 108.85391 * 359.97438 * 6 4 3 8 8 C 1.36773 * 125.79984 * 84.71876 * 3 2 1 9 9 C 1.47262 * 126.94029 * 0.02562 * 8 3 2 10 10 O 1.21624 * 120.00344 * 318.25026 * 9 8 3 11 11 N 1.34782 * 119.99559 * 138.25197 * 9 8 3 12 12 C 1.46501 * 120.00031 * 4.98593 * 11 9 8 13 13 C 1.50701 * 109.47033 * 93.88479 * 12 11 9 14 14 H 1.08002 * 119.99753 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99801 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99659 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00105 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46850 * 90.00251 * 17 15 13 19 19 H 1.48497 * 109.46917 * 210.00158 * 17 15 13 20 20 H 1.48500 * 109.47307 * 330.00750 * 17 15 13 21 21 C 1.46505 * 119.99713 * 184.98924 * 11 9 8 22 22 C 1.52999 * 109.47438 * 84.45624 * 21 11 9 23 23 C 1.52999 * 109.46772 * 64.99845 * 22 21 11 24 24 C 1.52990 * 109.47087 * 185.00099 * 22 21 11 25 25 H 1.09004 * 109.47037 * 299.99852 * 1 2 3 26 26 H 1.09001 * 109.47451 * 59.99585 * 1 2 3 27 27 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47451 * 120.00414 * 2 1 3 29 29 H 1.09004 * 109.47037 * 240.00148 * 2 1 3 30 30 H 1.07996 * 125.57067 * 180.02562 * 6 4 3 31 31 H 1.08004 * 126.82865 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.46565 * 213.88145 * 12 11 9 33 33 H 1.08999 * 109.47176 * 333.88130 * 12 11 9 34 34 H 0.96993 * 119.99910 * 179.97438 * 16 15 13 35 35 H 1.08997 * 109.46861 * 204.45878 * 21 11 9 36 36 H 1.09002 * 109.46819 * 324.45720 * 21 11 9 37 37 H 1.09000 * 109.46710 * 305.00269 * 22 21 11 38 38 H 1.08999 * 109.47648 * 60.00111 * 23 22 21 39 39 H 1.09002 * 109.47267 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47199 * 300.00180 * 23 22 21 41 41 H 1.08998 * 109.47587 * 59.99818 * 24 22 21 42 42 H 1.09006 * 109.47212 * 180.02562 * 24 22 21 43 43 H 1.09005 * 109.47051 * 299.99811 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3841 2.1320 -1.0881 5 1 2.3523 1.8023 -1.9998 6 6 2.7920 3.3823 -0.7247 7 6 2.7076 3.4955 0.6128 8 6 2.2027 2.2092 1.1046 9 6 1.9355 1.8402 2.5050 10 8 0.9369 1.2056 2.7868 11 7 2.7976 2.2058 3.4744 12 6 3.9419 3.0621 3.1523 13 6 3.5761 4.5030 3.3993 14 1 2.5899 4.7557 3.7596 15 6 4.5003 5.4988 3.1641 16 7 4.1809 6.7564 3.3791 17 14 6.2059 5.0618 2.5401 18 1 6.2032 5.0563 1.0551 19 1 7.1843 6.0659 3.0297 20 1 6.5858 3.7159 3.0393 21 6 2.5905 1.7467 4.8502 22 6 3.1999 0.3537 5.0203 23 6 4.7176 0.4362 4.8453 24 6 2.8757 -0.1775 6.4179 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1270 4.1551 -1.4008 31 1 2.9582 4.3624 1.2062 32 1 4.7886 2.7890 3.7821 33 1 4.2110 2.9299 2.1044 34 1 4.8312 7.4569 3.2141 35 1 3.0705 2.4401 5.5407 36 1 1.5221 1.7042 5.0620 37 1 2.7837 -0.3189 4.2703 38 1 5.1338 1.1089 5.5952 39 1 5.1518 -0.5562 4.9661 40 1 4.9485 0.8148 3.8496 41 1 1.7945 -0.2363 6.5426 42 1 3.3103 -1.1698 6.5393 43 1 3.2919 0.4952 7.1679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795749004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:30 Heat of formation + Delta-G solvation = -25.452304 kcal Electronic energy + Delta-G solvation = -23000.466345 eV Core-core repulsion = 19852.151492 eV Total energy + Delta-G solvation = -3148.314853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14081 -40.26456 -37.47642 -35.70094 -34.46700 -34.13981 -31.83097 -30.01344 -29.16273 -27.99938 -27.18228 -24.66432 -24.11896 -22.58011 -21.56927 -20.99384 -19.11040 -18.99974 -18.39860 -17.12318 -17.03700 -16.34147 -15.84594 -15.50184 -15.27517 -15.13343 -14.75825 -14.63770 -14.35500 -14.24236 -14.09495 -13.66240 -13.21315 -13.14314 -13.10538 -12.92897 -12.86972 -12.58929 -12.44271 -12.25852 -12.08932 -11.95585 -11.81408 -11.72775 -11.61864 -11.53726 -10.77024 -10.63701 -9.52092 -9.29919 -8.96401 -8.25677 -6.29398 1.02009 1.40075 1.40709 1.50904 1.68067 2.28769 2.36838 2.46654 2.64658 3.08268 3.85231 3.91207 4.04884 4.13452 4.20694 4.25041 4.44311 4.48512 4.64461 4.67871 4.71086 4.77328 4.80776 4.89114 4.89624 4.97788 4.99530 5.04493 5.07596 5.08179 5.23286 5.28788 5.39899 5.43403 5.45935 5.47990 5.54723 5.87496 6.00535 6.16268 6.27053 6.69961 6.78881 6.84921 7.31292 7.52366 8.90814 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.009065 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.011720 B = 3087.959301 C = 4776.110066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C 0.090 3.910 4 N -0.533 5.533 5 H 0.432 0.568 6 C -0.017 4.017 7 C -0.188 4.188 8 C -0.257 4.257 9 C 0.584 3.416 10 O -0.592 6.592 11 N -0.590 5.590 12 C 0.220 3.780 13 C -0.524 4.524 14 H 0.023 0.977 15 C 0.026 3.974 16 N -0.942 5.942 17 Si 0.932 3.068 18 H -0.256 1.256 19 H -0.285 1.285 20 H -0.246 1.246 21 C 0.123 3.877 22 C -0.101 4.101 23 C -0.142 4.142 24 C -0.135 4.135 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.197 0.803 31 H 0.137 0.863 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.267 0.733 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -14.665 -7.838 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.028 4.028 4 N -0.130 5.130 5 H 0.273 0.727 6 C -0.145 4.145 7 C -0.212 4.212 8 C -0.267 4.267 9 C 0.375 3.625 10 O -0.476 6.476 11 N -0.319 5.319 12 C 0.098 3.902 13 C -0.563 4.563 14 H 0.042 0.958 15 C -0.172 4.172 16 N -0.582 5.582 17 Si 0.754 3.246 18 H -0.181 1.181 19 H -0.211 1.211 20 H -0.170 1.170 21 C 0.000 4.000 22 C -0.121 4.121 23 C -0.200 4.200 24 C -0.193 4.193 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.213 0.787 31 H 0.155 0.845 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.768 -14.811 -7.822 16.767 hybrid contribution 0.495 0.932 -0.134 1.064 sum 1.263 -13.878 -7.957 16.047 Atomic orbital electron populations 1.21683 0.93893 1.02522 1.01694 1.20140 0.96787 0.87931 1.03724 1.20367 1.01307 0.95551 0.85589 1.41353 1.51731 1.11154 1.08798 0.72741 1.22041 1.07833 0.88875 0.95735 1.22747 1.05080 0.98246 0.95134 1.20235 1.16572 0.97643 0.92258 1.17802 0.81623 0.77708 0.85374 1.90602 1.28259 1.44449 1.84283 1.47774 1.27288 1.48750 1.08058 1.19739 0.84967 0.87994 0.97499 1.21413 0.99210 0.91236 1.44445 0.95820 1.25636 1.02389 0.94257 0.94960 1.70056 1.37074 1.00794 1.50244 0.85945 0.79241 0.79256 0.80125 1.18090 1.21064 1.16959 1.21466 1.00225 0.95724 0.82600 1.21390 0.96501 0.95296 0.98889 1.21851 0.94710 1.02129 1.01270 1.21706 1.01531 1.01531 0.94523 0.94242 0.92189 0.90486 0.91373 0.87798 0.78662 0.84490 0.94484 0.93400 0.92343 0.91072 0.92545 0.92546 0.92547 0.90964 0.94123 0.92828 0.90811 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.89 71.98 0.71 -2.82 16 2 C -0.05 -1.20 5.89 29.85 0.18 -1.03 16 3 C 0.09 2.84 6.43 41.78 0.27 3.11 16 4 N -0.53 -13.23 5.90 -182.72 -1.08 -14.31 16 5 H 0.43 6.52 8.96 -92.71 -0.83 5.69 16 6 C -0.02 -0.53 11.89 83.12 0.99 0.46 16 7 C -0.19 -7.80 8.66 23.62 0.20 -7.59 16 8 C -0.26 -10.60 5.34 -19.04 -0.10 -10.70 16 9 C 0.58 26.71 7.30 86.61 0.63 27.34 16 10 O -0.59 -28.30 15.00 -4.11 -0.06 -28.37 16 11 N -0.59 -26.52 2.19 -830.19 -1.82 -28.34 16 12 C 0.22 10.33 2.95 85.63 0.25 10.58 16 13 C -0.52 -29.25 7.77 25.60 0.20 -29.05 16 14 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 15 C 0.03 1.46 5.37 84.65 0.45 1.91 16 16 N -0.94 -56.73 13.96 21.45 0.30 -56.43 16 17 Si 0.93 41.28 27.47 68.60 1.88 43.16 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.25 -10.11 6.54 99.48 0.65 -9.46 16 21 C 0.12 4.87 4.85 86.38 0.42 5.29 16 22 C -0.10 -3.20 3.09 -10.80 -0.03 -3.24 16 23 C -0.14 -4.20 8.33 71.98 0.60 -3.60 16 24 C -0.14 -3.37 9.19 71.98 0.66 -2.70 16 25 H 0.04 1.32 6.78 -2.39 -0.02 1.30 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.20 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.14 6.80 5.39 -2.91 -0.02 6.78 16 32 H 0.04 1.68 5.52 -2.38 -0.01 1.67 16 33 H 0.05 2.24 4.73 -2.39 -0.01 2.22 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.07 2.86 8.03 -2.39 -0.02 2.85 16 36 H 0.06 2.35 7.53 -2.39 -0.02 2.33 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.35 6.25 -2.39 -0.01 1.33 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.06 1.45 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -71.95 341.16 4.77 -67.18 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.11 Total: 29.14 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 5.43 Total: -12.03 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -2.60 Total: -99.08 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.06 Total: -28.37 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.88 Total: 43.16 kcal Total: -71.95 4.77 -67.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795749004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.724 kcal (2) G-P(sol) polarization free energy of solvation -71.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds