Wall clock time and date at job start Tue Mar 31 2020 00:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 113.40398 * 2 1 4 4 C 1.50569 * 114.57107 * 226.42417 * 2 1 3 5 5 O 1.21279 * 131.84907 * 66.81874 * 4 2 1 6 6 N 1.34607 * 96.30261 * 246.82310 * 4 2 1 7 7 C 1.46496 * 134.66379 * 180.02562 * 6 4 2 8 8 N 1.46501 * 109.47395 * 264.82574 * 7 6 4 9 9 C 1.36935 * 119.99891 * 90.00529 * 8 7 6 10 10 H 1.08000 * 119.99544 * 219.57487 * 9 8 7 11 11 C 1.38807 * 120.00148 * 39.57143 * 9 8 7 12 12 N 1.31621 * 119.99918 * 19.32427 * 11 9 8 13 13 Si 1.86800 * 120.00086 * 199.31718 * 11 9 8 14 14 H 1.48507 * 109.46717 * 60.00823 * 13 11 9 15 15 H 1.48497 * 109.47172 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47472 * 300.00594 * 13 11 9 17 17 C 1.46499 * 119.99883 * 269.99979 * 8 7 6 18 18 C 1.52999 * 117.49758 * 184.94906 * 17 8 7 19 19 C 1.53002 * 60.00280 * 252.51292 * 18 17 8 20 20 C 1.46357 * 90.66746 * 359.75813 * 6 4 2 21 21 H 1.09003 * 113.04962 * 115.68975 * 20 6 4 22 22 C 1.53000 * 113.04942 * 244.78235 * 20 6 4 23 23 C 1.52998 * 117.49542 * 253.85319 * 22 20 6 24 24 C 1.53001 * 60.00202 * 252.51321 * 23 22 20 25 25 H 1.09001 * 109.47102 * 286.36763 * 1 2 3 26 26 H 1.08994 * 109.47292 * 46.37346 * 1 2 3 27 27 H 1.09002 * 109.46904 * 166.36879 * 1 2 3 28 28 H 1.08993 * 109.47190 * 193.62314 * 3 2 1 29 29 H 1.08999 * 109.47693 * 313.63171 * 3 2 1 30 30 H 1.09007 * 109.46556 * 73.63278 * 3 2 1 31 31 H 1.08993 * 109.47443 * 24.83109 * 7 6 4 32 32 H 1.09009 * 109.46998 * 144.82784 * 7 6 4 33 33 H 0.97001 * 120.00010 * 184.95984 * 12 11 9 34 34 H 1.08998 * 115.55352 * 330.66131 * 17 8 7 35 35 H 1.09001 * 117.49925 * 0.02562 * 18 17 8 36 36 H 1.09005 * 117.49974 * 145.02766 * 18 17 8 37 37 H 1.09001 * 117.50034 * 252.51200 * 19 18 17 38 38 H 1.08994 * 117.51516 * 107.47764 * 19 18 17 39 39 H 1.08995 * 115.55158 * 39.56094 * 22 20 6 40 40 H 1.08996 * 117.50386 * 359.97438 * 23 22 20 41 41 H 1.08997 * 117.50129 * 145.02536 * 23 22 20 42 42 H 1.08998 * 117.49700 * 252.51567 * 24 23 22 43 43 H 1.08997 * 117.49966 * 107.48629 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1378 1.4041 0.0000 4 6 2.1561 -0.9439 -0.9920 5 8 2.1692 -0.9514 -2.2047 6 7 2.6965 -1.7767 -0.0829 7 6 3.4999 -2.9995 -0.1558 8 7 2.6208 -4.1678 -0.0640 9 6 2.0942 -4.7195 -1.2012 10 1 1.0740 -5.0737 -1.2072 11 6 2.8717 -4.8235 -2.3464 12 7 4.1835 -4.7597 -2.2593 13 14 2.0563 -5.0543 -4.0112 14 1 1.1620 -3.9015 -4.2883 15 1 3.0986 -5.1373 -5.0656 16 1 1.2601 -6.3077 -4.0030 17 6 2.3051 -4.7458 1.2446 18 6 1.4771 -6.0322 1.2675 19 6 0.8448 -4.7077 1.7000 20 6 2.1611 -0.9608 1.0078 21 1 1.4243 -1.4885 1.6135 22 6 3.2522 -0.3062 1.8574 23 6 3.5047 -0.8847 3.2511 24 6 2.8098 0.4700 3.0996 25 1 -0.3633 0.2896 0.9860 26 1 -0.3633 0.7090 -0.7438 27 1 -0.3633 -0.9987 -0.2422 28 1 3.1986 1.3408 -0.2420 29 1 1.6314 2.0193 -0.7438 30 1 2.0163 1.8525 0.9861 31 1 4.0391 -3.0241 -1.1028 32 1 4.2128 -3.0155 0.6687 33 1 4.7236 -4.7600 -3.0650 34 1 3.0736 -4.6279 2.0085 35 1 1.1676 -6.4486 0.3089 36 1 1.7010 -6.7610 2.0466 37 1 0.6528 -4.5652 2.7635 38 1 0.1193 -4.2523 1.0261 39 1 4.1125 0.0738 1.3065 40 1 2.8932 -1.7314 3.5630 41 1 4.5313 -0.8856 3.6174 42 1 3.3794 1.3603 3.3660 43 1 1.7416 0.5142 3.3114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811736235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:42 Heat of formation + Delta-G solvation = 68.778767 kcal Electronic energy + Delta-G solvation = -23340.443804 eV Core-core repulsion = 20196.215117 eV Total energy + Delta-G solvation = -3144.228687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84606 -37.06228 -36.94470 -35.15339 -33.79299 -32.32278 -30.28638 -27.39608 -26.73403 -25.06055 -23.87492 -22.28159 -21.50410 -21.31519 -20.35814 -19.90256 -17.27409 -16.72379 -16.21561 -15.80470 -15.40570 -15.15544 -14.65099 -14.39069 -13.93767 -13.59193 -13.45226 -13.02552 -12.83655 -12.24151 -12.12928 -11.94790 -11.74848 -11.59745 -11.49135 -11.17839 -11.03608 -10.95290 -10.78340 -10.74299 -10.68469 -10.52916 -10.13568 -10.01344 -9.82722 -9.72070 -9.43107 -8.84259 -8.44293 -7.96817 -6.73373 -5.91126 -3.54896 3.33637 3.41727 3.45996 3.54459 3.63148 4.10664 4.29634 4.46570 4.75073 4.86235 4.91373 5.06574 5.13895 5.20740 5.29422 5.37251 5.39873 5.52712 5.66252 5.75627 5.79448 5.88531 5.92496 5.96606 5.99270 6.05489 6.05941 6.11870 6.17322 6.23585 6.26648 6.34257 6.37391 6.52319 6.55390 6.88527 7.07417 7.10449 7.54198 7.75155 7.86581 8.40546 9.04127 9.15021 9.65553 10.19822 11.09749 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.007679 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.180371 B = 3645.642060 C = 4490.320328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.519 3.481 5 O -0.524 6.524 6 N -0.610 5.610 7 C 0.373 3.627 8 N -0.539 5.539 9 C -0.269 4.269 10 H 0.060 0.940 11 C 0.029 3.971 12 N -0.886 5.886 13 Si 0.901 3.099 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.281 1.281 17 C 0.121 3.879 18 C -0.186 4.186 19 C -0.225 4.225 20 C 0.156 3.844 21 H 0.083 0.917 22 C -0.149 4.149 23 C -0.176 4.176 24 C -0.172 4.172 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.052 0.948 33 H 0.259 0.741 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 9.805 11.424 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.126 4.126 3 C -0.173 4.173 4 C 0.303 3.697 5 O -0.398 6.398 6 N -0.349 5.349 7 C 0.168 3.832 8 N -0.256 5.256 9 C -0.398 4.398 10 H 0.078 0.922 11 C -0.172 4.172 12 N -0.527 5.527 13 Si 0.730 3.270 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.207 1.207 17 C 0.012 3.988 18 C -0.225 4.225 19 C -0.266 4.266 20 C 0.050 3.950 21 H 0.101 0.899 22 C -0.169 4.169 23 C -0.213 4.213 24 C -0.210 4.210 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.519 9.409 10.570 14.373 hybrid contribution -0.442 -0.280 -0.709 0.881 sum -2.961 9.129 9.861 13.760 Atomic orbital electron populations 1.21417 0.91492 1.02809 1.01908 1.22438 0.97395 0.96452 0.96352 1.21424 1.00590 0.93177 1.02072 1.21835 0.78345 0.82455 0.87101 1.90637 1.60854 1.75199 1.13089 1.51985 1.52262 1.24934 1.05695 1.21182 0.86176 0.72975 1.02866 1.43941 1.54797 1.26511 1.00400 1.18818 0.94513 1.37537 0.88953 0.92233 1.25166 0.94780 0.97701 0.99557 1.69930 1.03429 1.50906 1.28456 0.86401 0.78974 0.78258 0.83411 1.20197 1.21377 1.20704 1.21194 0.90364 0.97274 0.89926 1.23013 1.06257 0.90862 1.02331 1.23367 1.01218 1.02837 0.99169 1.21647 0.93037 0.89642 0.90674 0.89897 1.22463 1.01031 1.03593 0.89793 1.22946 1.01562 0.96986 0.99770 1.22858 1.00958 0.95342 1.01823 0.91819 0.91801 0.91966 0.92356 0.92150 0.91415 0.86201 0.92948 0.93103 0.89655 0.88188 0.90567 0.90919 0.89915 0.87595 0.88712 0.89032 0.88942 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.25 37.16 0.34 -1.28 16 2 C -0.12 -1.89 1.57 -155.79 -0.24 -2.14 16 3 C -0.11 -1.45 8.11 37.16 0.30 -1.15 16 4 C 0.52 11.21 8.20 -23.39 -0.19 11.02 16 5 O -0.52 -13.80 18.03 5.56 0.10 -13.70 16 6 N -0.61 -12.50 3.44 -196.02 -0.67 -13.17 16 7 C 0.37 8.64 7.07 -63.75 -0.45 8.19 16 8 N -0.54 -13.08 2.99 -169.35 -0.51 -13.59 16 9 C -0.27 -7.36 8.26 -15.06 -0.12 -7.48 16 10 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 11 C 0.03 0.83 4.99 -17.43 -0.09 0.74 16 12 N -0.89 -25.53 11.48 55.49 0.64 -24.89 16 13 Si 0.90 22.99 29.60 -169.99 -5.03 17.96 16 14 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.12 2.50 6.57 -67.93 -0.45 2.05 16 18 C -0.19 -3.63 9.78 -26.73 -0.26 -3.89 16 19 C -0.23 -4.14 10.33 -26.73 -0.28 -4.42 16 20 C 0.16 2.42 4.02 -80.33 -0.32 2.10 16 21 H 0.08 1.30 7.98 -51.93 -0.41 0.89 16 22 C -0.15 -1.91 4.22 -90.62 -0.38 -2.29 16 23 C -0.18 -1.98 10.24 -26.73 -0.27 -2.25 16 24 C -0.17 -1.70 9.37 -26.73 -0.25 -1.95 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 27 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 28 H 0.06 0.77 7.44 -51.93 -0.39 0.39 16 29 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.07 0.69 7.06 -51.93 -0.37 0.32 16 31 H 0.12 3.26 5.58 -51.93 -0.29 2.97 16 32 H 0.05 1.11 8.07 -51.92 -0.42 0.69 16 33 H 0.26 7.29 8.32 -40.82 -0.34 6.95 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.10 2.18 6.67 -51.93 -0.35 1.83 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.11 1.42 7.62 -51.93 -0.40 1.02 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -31.23 352.22 -10.03 -41.26 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.19 Total: 3.58 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.67 Total: -2.74 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.54 Total: -51.66 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.10 Total: -13.70 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.23 -10.03 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811736235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.034 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds