Wall clock time and date at job start Tue Mar 31 2020 00:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 113.40398 * 2 1 4 4 C 1.50569 * 114.57107 * 226.42417 * 2 1 3 5 5 O 1.21279 * 131.84907 * 66.81874 * 4 2 1 6 6 N 1.34607 * 96.30261 * 246.82310 * 4 2 1 7 7 C 1.46496 * 134.66379 * 180.02562 * 6 4 2 8 8 N 1.46501 * 109.47395 * 264.82574 * 7 6 4 9 9 C 1.36935 * 119.99891 * 90.00529 * 8 7 6 10 10 H 1.08000 * 119.99544 * 219.57487 * 9 8 7 11 11 C 1.38807 * 120.00148 * 39.57143 * 9 8 7 12 12 N 1.31621 * 119.99918 * 19.32427 * 11 9 8 13 13 Si 1.86800 * 120.00086 * 199.31718 * 11 9 8 14 14 H 1.48507 * 109.46717 * 60.00823 * 13 11 9 15 15 H 1.48497 * 109.47172 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47472 * 300.00594 * 13 11 9 17 17 C 1.46499 * 119.99883 * 269.99979 * 8 7 6 18 18 C 1.52999 * 117.49758 * 184.94906 * 17 8 7 19 19 C 1.53002 * 60.00280 * 252.51292 * 18 17 8 20 20 C 1.46357 * 90.66746 * 359.75813 * 6 4 2 21 21 H 1.09003 * 113.04962 * 115.68975 * 20 6 4 22 22 C 1.53000 * 113.04942 * 244.78235 * 20 6 4 23 23 C 1.52998 * 117.49542 * 253.85319 * 22 20 6 24 24 C 1.53001 * 60.00202 * 252.51321 * 23 22 20 25 25 H 1.09001 * 109.47102 * 286.36763 * 1 2 3 26 26 H 1.08994 * 109.47292 * 46.37346 * 1 2 3 27 27 H 1.09002 * 109.46904 * 166.36879 * 1 2 3 28 28 H 1.08993 * 109.47190 * 193.62314 * 3 2 1 29 29 H 1.08999 * 109.47693 * 313.63171 * 3 2 1 30 30 H 1.09007 * 109.46556 * 73.63278 * 3 2 1 31 31 H 1.08993 * 109.47443 * 24.83109 * 7 6 4 32 32 H 1.09009 * 109.46998 * 144.82784 * 7 6 4 33 33 H 0.97001 * 120.00010 * 184.95984 * 12 11 9 34 34 H 1.08998 * 115.55352 * 330.66131 * 17 8 7 35 35 H 1.09001 * 117.49925 * 0.02562 * 18 17 8 36 36 H 1.09005 * 117.49974 * 145.02766 * 18 17 8 37 37 H 1.09001 * 117.50034 * 252.51200 * 19 18 17 38 38 H 1.08994 * 117.51516 * 107.47764 * 19 18 17 39 39 H 1.08995 * 115.55158 * 39.56094 * 22 20 6 40 40 H 1.08996 * 117.50386 * 359.97438 * 23 22 20 41 41 H 1.08997 * 117.50129 * 145.02536 * 23 22 20 42 42 H 1.08998 * 117.49700 * 252.51567 * 24 23 22 43 43 H 1.08997 * 117.49966 * 107.48629 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1378 1.4041 0.0000 4 6 2.1561 -0.9439 -0.9920 5 8 2.1692 -0.9514 -2.2047 6 7 2.6965 -1.7767 -0.0829 7 6 3.4999 -2.9995 -0.1558 8 7 2.6208 -4.1678 -0.0640 9 6 2.0942 -4.7195 -1.2012 10 1 1.0740 -5.0737 -1.2072 11 6 2.8717 -4.8235 -2.3464 12 7 4.1835 -4.7597 -2.2593 13 14 2.0563 -5.0543 -4.0112 14 1 1.1620 -3.9015 -4.2883 15 1 3.0986 -5.1373 -5.0656 16 1 1.2601 -6.3077 -4.0030 17 6 2.3051 -4.7458 1.2446 18 6 1.4771 -6.0322 1.2675 19 6 0.8448 -4.7077 1.7000 20 6 2.1611 -0.9608 1.0078 21 1 1.4243 -1.4885 1.6135 22 6 3.2522 -0.3062 1.8574 23 6 3.5047 -0.8847 3.2511 24 6 2.8098 0.4700 3.0996 25 1 -0.3633 0.2896 0.9860 26 1 -0.3633 0.7090 -0.7438 27 1 -0.3633 -0.9987 -0.2422 28 1 3.1986 1.3408 -0.2420 29 1 1.6314 2.0193 -0.7438 30 1 2.0163 1.8525 0.9861 31 1 4.0391 -3.0241 -1.1028 32 1 4.2128 -3.0155 0.6687 33 1 4.7236 -4.7600 -3.0650 34 1 3.0736 -4.6279 2.0085 35 1 1.1676 -6.4486 0.3089 36 1 1.7010 -6.7610 2.0466 37 1 0.6528 -4.5652 2.7635 38 1 0.1193 -4.2523 1.0261 39 1 4.1125 0.0738 1.3065 40 1 2.8932 -1.7314 3.5630 41 1 4.5313 -0.8856 3.6174 42 1 3.3794 1.3603 3.3660 43 1 1.7416 0.5142 3.3114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811736235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:41 Heat of formation + Delta-G solvation = 51.014091 kcal Electronic energy + Delta-G solvation = -23341.214138 eV Core-core repulsion = 20196.215117 eV Total energy + Delta-G solvation = -3144.999021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.28246 -38.75819 -38.28586 -36.56658 -35.52864 -33.96431 -32.11122 -28.48442 -28.42624 -26.57884 -25.59540 -23.08048 -23.02390 -22.82128 -21.74329 -21.47948 -18.84595 -18.43513 -17.84766 -17.40126 -16.96592 -16.65505 -16.19907 -15.89228 -15.72122 -14.96951 -14.70793 -14.69752 -14.09329 -13.74990 -13.48768 -13.28660 -13.12062 -13.07942 -12.98593 -12.84350 -12.72231 -12.33840 -12.25054 -12.23277 -12.09603 -12.03780 -11.86571 -11.55029 -11.11820 -11.02196 -10.89188 -10.53868 -10.38132 -9.62088 -8.71179 -7.99976 -5.67526 1.28241 1.36540 1.42378 1.69746 2.23812 2.40555 2.93002 3.02688 3.11026 3.42460 3.45378 3.67905 3.78768 4.08675 4.15306 4.16971 4.24525 4.32130 4.36789 4.43742 4.47825 4.53061 4.79292 4.82616 4.88928 4.90632 4.92899 5.00329 5.02054 5.03193 5.15078 5.20338 5.22274 5.30453 5.33093 5.41631 5.44355 5.49320 5.53930 5.94337 6.16907 6.33548 6.99638 7.47093 7.66518 8.15703 8.93668 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.007679 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.180371 B = 3645.642060 C = 4490.320328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C -0.110 4.110 4 C 0.489 3.511 5 O -0.590 6.590 6 N -0.620 5.620 7 C 0.380 3.620 8 N -0.556 5.556 9 C -0.262 4.262 10 H 0.047 0.953 11 C -0.017 4.017 12 N -0.908 5.908 13 Si 0.942 3.058 14 H -0.298 1.298 15 H -0.286 1.286 16 H -0.264 1.264 17 C 0.099 3.901 18 C -0.188 4.188 19 C -0.196 4.196 20 C 0.166 3.834 21 H 0.088 0.912 22 C -0.171 4.171 23 C -0.178 4.178 24 C -0.139 4.139 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 11.387 15.088 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.103 4.103 3 C -0.168 4.168 4 C 0.276 3.724 5 O -0.469 6.469 6 N -0.356 5.356 7 C 0.174 3.826 8 N -0.275 5.275 9 C -0.392 4.392 10 H 0.065 0.935 11 C -0.216 4.216 12 N -0.551 5.551 13 Si 0.771 3.229 14 H -0.226 1.226 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.008 4.008 18 C -0.226 4.226 19 C -0.236 4.236 20 C 0.062 3.938 21 H 0.106 0.894 22 C -0.191 4.191 23 C -0.215 4.215 24 C -0.177 4.177 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.693 10.990 14.303 18.412 hybrid contribution -0.112 -0.747 -1.767 1.921 sum -3.805 10.243 12.537 16.630 Atomic orbital electron populations 1.21485 0.89799 1.01550 1.04649 1.22512 0.98492 0.96968 0.92333 1.21472 0.99616 0.91184 1.04488 1.23264 0.78198 0.83926 0.87023 1.90576 1.63207 1.77073 1.16086 1.51899 1.51451 1.24277 1.08016 1.20692 0.86644 0.74085 1.01175 1.43989 1.55096 1.27312 1.01061 1.18850 0.93840 1.36155 0.90399 0.93497 1.25688 0.95280 0.98904 1.01735 1.70025 1.04002 1.52712 1.28319 0.85745 0.78094 0.77829 0.81279 1.22572 1.21166 1.18894 1.21438 0.92247 0.98454 0.88681 1.23031 1.06002 0.91580 1.01985 1.23285 0.98545 1.01011 1.00794 1.21796 0.93785 0.88483 0.89720 0.89380 1.22265 1.00331 1.06084 0.90379 1.23018 1.02376 0.98145 0.97921 1.23004 1.02091 0.95168 0.97412 0.87604 0.90921 0.94808 0.93563 0.91477 0.87625 0.90852 0.91218 0.93750 0.87472 0.91285 0.87409 0.86937 0.92131 0.88641 0.88933 0.88330 0.86829 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.25 71.98 0.67 -2.28 16 2 C -0.10 -2.92 1.57 -53.01 -0.08 -3.01 16 3 C -0.11 -2.48 8.11 71.98 0.58 -1.89 16 4 C 0.49 21.87 8.20 79.70 0.65 22.52 16 5 O -0.59 -33.12 18.03 -3.03 -0.05 -33.17 16 6 N -0.62 -25.89 3.44 -892.56 -3.07 -28.96 16 7 C 0.38 18.21 7.07 170.96 1.21 19.41 16 8 N -0.56 -27.50 2.99 -689.69 -2.06 -29.56 16 9 C -0.26 -14.87 8.26 84.03 0.69 -14.17 16 10 H 0.05 2.73 7.10 -2.91 -0.02 2.71 16 11 C -0.02 -1.03 4.99 84.86 0.42 -0.60 16 12 N -0.91 -54.80 11.48 21.65 0.25 -54.55 16 13 Si 0.94 49.29 29.60 68.60 2.03 51.32 16 14 H -0.30 -16.55 7.11 99.48 0.71 -15.84 16 15 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 16 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 17 C 0.10 3.97 6.57 44.99 0.30 4.26 16 18 C -0.19 -7.03 9.78 30.59 0.30 -6.74 16 19 C -0.20 -6.73 10.33 30.60 0.32 -6.42 16 20 C 0.17 4.86 4.02 37.03 0.15 5.01 16 21 H 0.09 2.51 7.98 -2.39 -0.02 2.49 16 22 C -0.17 -3.87 4.22 -10.79 -0.05 -3.92 16 23 C -0.18 -3.33 10.24 30.59 0.31 -3.02 16 24 C -0.14 -2.02 9.37 30.60 0.29 -1.73 16 25 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 27 H 0.03 1.03 8.04 -2.39 -0.02 1.02 16 28 H 0.05 1.16 7.44 -2.39 -0.02 1.14 16 29 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 30 H 0.11 1.60 7.06 -2.38 -0.02 1.58 16 31 H 0.07 4.25 5.58 -2.39 -0.01 4.24 16 32 H 0.07 3.01 8.07 -2.38 -0.02 2.99 16 33 H 0.25 15.00 8.32 -92.71 -0.77 14.23 16 34 H 0.11 3.80 8.14 -2.39 -0.02 3.79 16 35 H 0.07 3.03 6.67 -2.39 -0.02 3.01 16 36 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 37 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.10 2.40 7.62 -2.39 -0.02 2.38 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -74.24 352.22 3.83 -70.41 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.98 Total: 17.08 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.76 Total: 7.43 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -4.88 Total: -113.07 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.05 Total: -33.17 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Total: -74.24 3.83 -70.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811736235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.428 kcal (2) G-P(sol) polarization free energy of solvation -74.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds