Wall clock time and date at job start Tue Mar 31 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47223 * 204.79372 * 3 2 1 5 5 C 1.53001 * 109.47211 * 60.00036 * 4 3 2 6 6 C 1.53001 * 109.47177 * 299.99660 * 4 3 2 7 7 C 1.50699 * 109.47114 * 180.02562 * 4 3 2 8 8 O 1.21283 * 120.00049 * 1.31717 * 7 4 3 9 9 N 1.34777 * 119.99950 * 181.31195 * 7 4 3 10 10 C 1.47078 * 120.88496 * 354.93251 * 9 7 4 11 11 C 1.53692 * 108.28179 * 128.75201 * 10 9 7 12 12 N 1.46906 * 109.25643 * 54.08172 * 11 10 9 13 13 C 1.46898 * 111.00018 * 172.60672 * 12 11 10 14 14 C 1.50695 * 109.47317 * 294.30908 * 13 12 11 15 15 H 1.07998 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00034 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00222 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99952 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46911 * 90.00432 * 18 16 14 20 20 H 1.48493 * 109.47116 * 210.00500 * 18 16 14 21 21 H 1.48500 * 109.47134 * 330.00697 * 18 16 14 22 22 C 1.46894 * 111.26945 * 296.76213 * 12 11 10 23 23 C 1.47083 * 120.88065 * 175.20999 * 9 7 4 24 24 H 4.44649 * 5.63423 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.47218 * 84.78978 * 3 2 1 26 26 H 1.09005 * 109.47219 * 324.79772 * 3 2 1 27 27 H 1.09001 * 109.46946 * 289.43268 * 5 4 3 28 28 H 1.08999 * 109.46925 * 49.43649 * 5 4 3 29 29 H 1.09004 * 109.47064 * 169.43406 * 5 4 3 30 30 H 1.09002 * 109.47518 * 188.87191 * 6 4 3 31 31 H 1.08996 * 109.47325 * 308.87967 * 6 4 3 32 32 H 1.09006 * 109.46686 * 68.87911 * 6 4 3 33 33 H 1.09003 * 109.63094 * 248.52549 * 10 9 7 34 34 H 1.09002 * 109.62733 * 9.09839 * 10 9 7 35 35 H 1.09002 * 109.64886 * 294.08459 * 11 10 9 36 36 H 1.08994 * 109.42518 * 173.95364 * 11 10 9 37 37 H 1.09005 * 109.46630 * 54.30707 * 13 12 11 38 38 H 1.08996 * 109.46816 * 174.30311 * 13 12 11 39 39 H 0.97001 * 120.00237 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.49384 * 303.14354 * 22 12 11 41 41 H 1.08997 * 109.49087 * 183.06238 * 22 12 11 42 42 H 1.08998 * 109.63030 * 350.89401 * 23 9 7 43 43 H 1.08998 * 109.63168 * 111.48295 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3104 0.6049 5 6 2.6454 1.4411 2.0415 6 6 2.6450 2.4888 -0.2268 7 6 4.6624 1.3113 0.6043 8 8 5.2692 0.3686 0.1417 9 7 5.3358 2.3598 1.1178 10 6 4.6239 3.5599 1.5825 11 6 5.1005 3.8816 3.0078 12 7 6.5657 3.9870 3.0165 13 6 7.0515 4.4647 4.3179 14 6 6.5815 5.8790 4.5411 15 1 5.9823 6.3737 3.7911 16 6 6.9174 6.5419 5.7025 17 7 6.5078 7.7763 5.8971 18 14 7.9544 5.6865 6.9996 19 1 9.3925 5.9425 6.7316 20 1 7.6000 6.2121 8.3424 21 1 7.6953 4.2250 6.9559 22 6 7.1940 2.7088 2.6569 23 6 6.8027 2.3365 1.2228 24 1 -1.0502 -0.0002 -0.0003 25 1 3.0094 -0.0925 -1.0234 26 1 3.0097 -0.8389 0.5924 27 1 1.5717 1.6288 2.0301 28 1 2.8471 0.5175 2.5840 29 1 3.1540 2.2701 2.5336 30 1 3.1315 3.4059 0.1055 31 1 2.8731 2.3170 -1.2787 32 1 1.5665 2.5831 -0.0995 33 1 4.8468 4.3971 0.9209 34 1 3.5506 3.3698 1.5880 35 1 4.7889 3.0876 3.6864 36 1 4.6658 4.8276 3.3305 37 1 6.6621 3.8234 5.1087 38 1 8.1410 4.4374 4.3313 39 1 6.7437 8.2425 6.7144 40 1 6.8533 1.9310 3.3404 41 1 8.2776 2.8043 2.7251 42 1 7.1707 1.3372 0.9906 43 1 7.2311 3.0583 0.5274 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827483451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:54 Heat of formation + Delta-G solvation = 40.450665 kcal Electronic energy + Delta-G solvation = -22485.412785 eV Core-core repulsion = 19339.955699 eV Total energy + Delta-G solvation = -3145.457086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77358 -37.88532 -36.51859 -34.63323 -32.85999 -32.28244 -30.75666 -28.79849 -27.69074 -27.54769 -25.99156 -23.45561 -23.08670 -21.27495 -20.33141 -18.69891 -17.88313 -16.90441 -16.56673 -16.19495 -15.43202 -14.87528 -14.72053 -14.63146 -14.27459 -14.18516 -13.88515 -13.55699 -13.30475 -12.95247 -12.48211 -12.39930 -12.31419 -12.28832 -12.08570 -11.59307 -11.53455 -11.27794 -11.17258 -10.88998 -10.79281 -10.53402 -10.37230 -10.22972 -10.20898 -9.95075 -9.49624 -9.38213 -8.64000 -8.53670 -7.50482 -6.12449 -4.10610 2.59205 2.64768 2.71436 3.10126 3.23625 3.31580 3.33046 4.12429 4.35689 4.43506 4.58042 4.64515 4.69167 4.95055 5.17232 5.19838 5.26169 5.36309 5.42706 5.50772 5.53784 5.56448 5.65588 5.68157 5.71083 5.72017 5.78750 5.88283 5.93398 6.01523 6.05428 6.15970 6.34805 6.37834 6.57082 6.76422 6.87934 7.46685 7.47201 7.49501 7.77648 7.90955 8.19138 8.55946 8.94414 9.49065 11.00300 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027823 B = 0.004097 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.107421 B = 6832.957212 C = 7282.551550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.171 4.171 3 C 0.010 3.990 4 C -0.074 4.074 5 C -0.158 4.158 6 C -0.158 4.158 7 C 0.526 3.474 8 O -0.551 6.551 9 N -0.603 5.603 10 C 0.087 3.913 11 C 0.048 3.952 12 N -0.526 5.526 13 C 0.162 3.838 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.874 3.126 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.038 3.962 23 C 0.118 3.882 24 H 0.215 0.785 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.027 0.973 36 H 0.103 0.897 37 H -0.011 1.011 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.027 0.973 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.646 -12.629 -10.167 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C -0.027 4.027 4 C -0.078 4.078 5 C -0.215 4.215 6 C -0.215 4.215 7 C 0.314 3.686 8 O -0.429 6.429 9 N -0.336 5.336 10 C -0.035 4.035 11 C -0.081 4.081 12 N -0.251 5.251 13 C 0.036 3.964 14 C -0.550 4.550 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.091 4.091 23 C -0.004 4.004 24 H 0.232 0.768 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.045 0.955 36 H 0.121 0.879 37 H 0.007 0.993 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.154 -12.618 -10.618 18.397 hybrid contribution 0.214 -0.839 1.500 1.732 sum -7.940 -13.457 -9.118 18.090 Atomic orbital electron populations 1.24834 0.95829 1.01099 1.01737 1.22960 0.94246 1.00074 0.99868 1.18564 0.84395 0.96848 1.02879 1.20660 0.91867 0.97021 0.98210 1.22270 1.02190 1.03585 0.93492 1.22281 1.02221 0.97182 0.99833 1.20369 0.89290 0.81825 0.77133 1.90659 1.70211 1.35340 1.46685 1.48134 1.07632 1.16566 1.61221 1.22739 0.97330 0.86825 0.96637 1.22502 0.89833 1.02104 0.93693 1.61895 1.04855 1.24615 1.33688 1.20181 0.95491 0.96470 0.84228 1.20995 1.33792 0.96011 1.04238 0.90048 1.24887 0.95712 0.94695 0.97898 1.69883 1.46028 1.10967 1.26809 0.86880 0.81211 0.80278 0.81484 1.20100 1.21163 1.19344 1.22462 1.00064 0.91686 0.94895 1.21739 0.79112 1.02377 0.97187 0.76768 0.88868 0.88955 0.91140 0.91996 0.90110 0.90238 0.91945 0.91163 0.90310 0.87675 0.95498 0.87891 0.99349 0.95620 0.92583 0.95480 0.90023 0.89363 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.98 19.25 29.55 0.57 -1.41 16 2 C -0.17 -1.79 11.18 -37.12 -0.41 -2.21 16 3 C 0.01 0.11 4.05 -29.52 -0.12 -0.01 16 4 C -0.07 -0.83 0.52 -155.66 -0.08 -0.92 16 5 C -0.16 -1.69 7.63 37.16 0.28 -1.41 16 6 C -0.16 -1.55 7.67 37.16 0.28 -1.26 16 7 C 0.53 7.44 6.49 -10.99 -0.07 7.37 16 8 O -0.55 -9.27 15.46 5.55 0.09 -9.18 16 9 N -0.60 -8.57 3.00 -172.18 -0.52 -9.09 16 10 C 0.09 1.18 4.08 -3.37 -0.01 1.16 16 11 C 0.05 0.82 5.20 -3.46 -0.02 0.80 16 12 N -0.53 -10.25 4.62 -235.47 -1.09 -11.34 16 13 C 0.16 3.75 3.79 -4.98 -0.02 3.73 16 14 C -0.51 -13.83 8.96 -34.44 -0.31 -14.14 16 15 H 0.08 2.37 7.37 -52.49 -0.39 1.98 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.61 13.96 55.43 0.77 -25.83 16 18 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 23 C 0.12 1.74 6.58 -3.60 -0.02 1.71 16 24 H 0.22 1.23 7.80 -54.08 -0.42 0.81 16 25 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 26 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 27 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16 28 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 29 H 0.08 0.91 4.15 -51.93 -0.22 0.69 16 30 H 0.08 0.77 4.68 -51.93 -0.24 0.53 16 31 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 32 H 0.07 0.63 7.45 -51.93 -0.39 0.24 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.11 1.18 2.87 -51.93 -0.15 1.03 16 35 H 0.03 0.46 7.62 -51.93 -0.40 0.07 16 36 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16 37 H -0.01 -0.26 7.18 -51.93 -0.37 -0.64 16 38 H 0.03 0.60 7.40 -51.93 -0.38 0.21 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 42 H 0.09 1.28 7.10 -51.93 -0.37 0.91 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -31.02 332.66 -7.04 -38.06 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.59 Total: 0.26 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.05 Total: -4.11 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.83 Total: -46.26 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.02 -7.04 -38.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.513 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds