Wall clock time and date at job start Tue Mar 31 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47223 * 204.79372 * 3 2 1 5 5 C 1.53001 * 109.47211 * 60.00036 * 4 3 2 6 6 C 1.53001 * 109.47177 * 299.99660 * 4 3 2 7 7 C 1.50699 * 109.47114 * 180.02562 * 4 3 2 8 8 O 1.21283 * 120.00049 * 1.31717 * 7 4 3 9 9 N 1.34777 * 119.99950 * 181.31195 * 7 4 3 10 10 C 1.47078 * 120.88496 * 354.93251 * 9 7 4 11 11 C 1.53692 * 108.28179 * 128.75201 * 10 9 7 12 12 N 1.46906 * 109.25643 * 54.08172 * 11 10 9 13 13 C 1.46898 * 111.00018 * 172.60672 * 12 11 10 14 14 C 1.50695 * 109.47317 * 294.30908 * 13 12 11 15 15 H 1.07998 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00034 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00222 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99952 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46911 * 90.00432 * 18 16 14 20 20 H 1.48493 * 109.47116 * 210.00500 * 18 16 14 21 21 H 1.48500 * 109.47134 * 330.00697 * 18 16 14 22 22 C 1.46894 * 111.26945 * 296.76213 * 12 11 10 23 23 C 1.47083 * 120.88065 * 175.20999 * 9 7 4 24 24 H 4.44649 * 5.63423 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.47218 * 84.78978 * 3 2 1 26 26 H 1.09005 * 109.47219 * 324.79772 * 3 2 1 27 27 H 1.09001 * 109.46946 * 289.43268 * 5 4 3 28 28 H 1.08999 * 109.46925 * 49.43649 * 5 4 3 29 29 H 1.09004 * 109.47064 * 169.43406 * 5 4 3 30 30 H 1.09002 * 109.47518 * 188.87191 * 6 4 3 31 31 H 1.08996 * 109.47325 * 308.87967 * 6 4 3 32 32 H 1.09006 * 109.46686 * 68.87911 * 6 4 3 33 33 H 1.09003 * 109.63094 * 248.52549 * 10 9 7 34 34 H 1.09002 * 109.62733 * 9.09839 * 10 9 7 35 35 H 1.09002 * 109.64886 * 294.08459 * 11 10 9 36 36 H 1.08994 * 109.42518 * 173.95364 * 11 10 9 37 37 H 1.09005 * 109.46630 * 54.30707 * 13 12 11 38 38 H 1.08996 * 109.46816 * 174.30311 * 13 12 11 39 39 H 0.97001 * 120.00237 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.49384 * 303.14354 * 22 12 11 41 41 H 1.08997 * 109.49087 * 183.06238 * 22 12 11 42 42 H 1.08998 * 109.63030 * 350.89401 * 23 9 7 43 43 H 1.08998 * 109.63168 * 111.48295 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3104 0.6049 5 6 2.6454 1.4411 2.0415 6 6 2.6450 2.4888 -0.2268 7 6 4.6624 1.3113 0.6043 8 8 5.2692 0.3686 0.1417 9 7 5.3358 2.3598 1.1178 10 6 4.6239 3.5599 1.5825 11 6 5.1005 3.8816 3.0078 12 7 6.5657 3.9870 3.0165 13 6 7.0515 4.4647 4.3179 14 6 6.5815 5.8790 4.5411 15 1 5.9823 6.3737 3.7911 16 6 6.9174 6.5419 5.7025 17 7 6.5078 7.7763 5.8971 18 14 7.9544 5.6865 6.9996 19 1 9.3925 5.9425 6.7316 20 1 7.6000 6.2121 8.3424 21 1 7.6953 4.2250 6.9559 22 6 7.1940 2.7088 2.6569 23 6 6.8027 2.3365 1.2228 24 1 -1.0502 -0.0002 -0.0003 25 1 3.0094 -0.0925 -1.0234 26 1 3.0097 -0.8389 0.5924 27 1 1.5717 1.6288 2.0301 28 1 2.8471 0.5175 2.5840 29 1 3.1540 2.2701 2.5336 30 1 3.1315 3.4059 0.1055 31 1 2.8731 2.3170 -1.2787 32 1 1.5665 2.5831 -0.0995 33 1 4.8468 4.3971 0.9209 34 1 3.5506 3.3698 1.5880 35 1 4.7889 3.0876 3.6864 36 1 4.6658 4.8276 3.3305 37 1 6.6621 3.8234 5.1087 38 1 8.1410 4.4374 4.3313 39 1 6.7437 8.2425 6.7144 40 1 6.8533 1.9310 3.3404 41 1 8.2776 2.8043 2.7251 42 1 7.1707 1.3372 0.9906 43 1 7.2311 3.0583 0.5274 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:54 Heat of formation + Delta-G solvation = 20.288180 kcal Electronic energy + Delta-G solvation = -22486.287096 eV Core-core repulsion = 19339.955699 eV Total energy + Delta-G solvation = -3146.331397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88890 -39.22996 -37.52543 -36.06776 -34.48124 -33.51909 -31.95908 -30.49372 -28.52928 -28.37893 -27.55302 -24.72811 -24.40471 -22.89140 -21.57388 -19.87412 -18.93282 -18.61674 -17.71577 -17.26746 -16.57218 -16.51221 -16.12521 -15.89091 -15.57883 -15.34675 -15.21452 -14.77717 -14.47427 -14.17640 -14.12615 -13.62079 -13.34449 -13.26632 -13.22752 -12.98635 -12.89354 -12.56403 -12.45566 -12.21460 -12.12868 -12.05082 -11.85070 -11.62087 -11.39653 -11.04877 -10.98719 -10.76775 -10.61140 -9.78868 -9.06273 -8.26994 -6.29883 1.35803 1.37027 1.46515 1.52189 1.75520 1.98557 2.08225 2.34781 3.05351 3.14241 3.22036 3.61065 3.79006 3.82655 3.92865 4.00139 4.09771 4.20330 4.23057 4.38979 4.49866 4.59952 4.67380 4.69105 4.73674 4.79741 4.82896 4.87075 4.91454 4.92277 4.93896 5.04193 5.08623 5.21975 5.24575 5.25455 5.42428 5.53404 5.93074 6.28402 6.37693 6.60531 6.75788 6.76429 7.05576 7.33816 8.88859 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027823 B = 0.004097 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.107421 B = 6832.957212 C = 7282.551550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.208 4.208 3 C 0.015 3.985 4 C -0.069 4.069 5 C -0.154 4.154 6 C -0.155 4.155 7 C 0.525 3.475 8 O -0.578 6.578 9 N -0.605 5.605 10 C 0.100 3.900 11 C 0.049 3.951 12 N -0.539 5.539 13 C 0.172 3.828 14 C -0.513 4.513 15 H 0.046 0.954 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.255 1.255 22 C 0.042 3.958 23 C 0.123 3.877 24 H 0.246 0.754 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.028 0.972 36 H 0.079 0.921 37 H -0.015 1.015 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.025 0.975 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 -14.038 -10.421 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.208 4.208 3 C -0.022 4.022 4 C -0.072 4.072 5 C -0.211 4.211 6 C -0.212 4.212 7 C 0.314 3.686 8 O -0.459 6.459 9 N -0.337 5.337 10 C -0.022 4.022 11 C -0.080 4.080 12 N -0.264 5.264 13 C 0.045 3.955 14 C -0.551 4.551 15 H 0.065 0.935 16 C -0.185 4.185 17 N -0.585 5.585 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.179 1.179 22 C -0.087 4.087 23 C 0.000 4.000 24 H 0.262 0.738 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.003 0.997 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.898 -14.041 -10.892 19.873 hybrid contribution 0.365 -0.403 1.501 1.597 sum -8.534 -14.444 -9.390 19.226 Atomic orbital electron populations 1.25608 0.96563 0.99212 0.99881 1.22976 0.94416 1.01810 1.01572 1.18416 0.85247 0.96247 1.02318 1.20658 0.89581 0.98018 0.98944 1.22238 1.03023 1.03049 0.92825 1.22267 1.03019 0.96288 0.99603 1.20890 0.90486 0.81012 0.76187 1.90645 1.71089 1.36251 1.47880 1.48194 1.07535 1.16815 1.61166 1.22701 0.98613 0.86736 0.94179 1.22476 0.88501 1.00888 0.96116 1.61809 1.06304 1.26690 1.31557 1.19940 0.95468 0.94107 0.86032 1.21214 1.32817 0.97769 1.03326 0.93533 1.25746 0.97144 0.95296 1.00352 1.70026 1.47917 1.12779 1.27775 0.85807 0.79570 0.79707 0.78379 1.19180 1.20910 1.17895 1.22502 1.00444 0.89948 0.95822 1.21667 0.79652 1.02670 0.96000 0.73804 0.89433 0.89905 0.89622 0.92436 0.90790 0.90160 0.91839 0.89795 0.90061 0.85069 0.95423 0.90298 0.99711 0.95293 0.92461 0.95707 0.89093 0.88956 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.96 19.25 74.32 1.43 -1.53 16 2 C -0.21 -3.93 11.18 31.12 0.35 -3.58 16 3 C 0.01 0.31 4.05 28.79 0.12 0.42 16 4 C -0.07 -1.44 0.52 -52.93 -0.03 -1.47 16 5 C -0.15 -3.02 7.63 71.98 0.55 -2.47 16 6 C -0.15 -2.71 7.67 71.98 0.55 -2.15 16 7 C 0.52 14.25 6.49 87.66 0.57 14.82 16 8 O -0.58 -19.07 15.46 -3.04 -0.05 -19.12 16 9 N -0.61 -16.46 3.00 -817.04 -2.45 -18.91 16 10 C 0.10 2.58 4.08 86.50 0.35 2.94 16 11 C 0.05 1.67 5.20 86.53 0.45 2.12 16 12 N -0.54 -20.76 4.62 -898.90 -4.15 -24.92 16 13 C 0.17 7.85 3.79 85.56 0.32 8.17 16 14 C -0.51 -28.18 8.96 25.60 0.23 -27.95 16 15 H 0.05 2.82 7.37 -2.91 -0.02 2.80 16 16 C 0.01 0.70 5.47 84.65 0.46 1.16 16 17 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 18 Si 0.94 42.85 27.47 68.60 1.88 44.73 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 22 C 0.04 1.32 5.62 86.39 0.49 1.81 16 23 C 0.12 3.45 6.58 86.35 0.57 4.02 16 24 H 0.25 1.82 7.80 -4.41 -0.03 1.79 16 25 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 26 H 0.08 1.84 8.11 -2.38 -0.02 1.82 16 27 H 0.08 1.43 7.51 -2.39 -0.02 1.41 16 28 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 29 H 0.07 1.54 4.15 -2.38 -0.01 1.53 16 30 H 0.08 1.38 4.68 -2.39 -0.01 1.37 16 31 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 32 H 0.08 1.26 7.45 -2.38 -0.02 1.25 16 33 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 34 H 0.13 2.73 2.87 -2.39 -0.01 2.73 16 35 H 0.03 0.93 7.62 -2.39 -0.02 0.92 16 36 H 0.08 3.07 6.67 -2.39 -0.02 3.06 16 37 H -0.01 -0.68 7.18 -2.38 -0.02 -0.70 16 38 H 0.03 1.31 7.40 -2.39 -0.02 1.29 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 2.70 7.99 -2.39 -0.02 2.68 16 42 H 0.09 2.56 7.10 -2.39 -0.02 2.55 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -67.00 332.66 2.88 -64.12 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.93 Total: 14.60 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 6.41 Total: -3.71 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -6.30 Total: -100.63 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Total: -67.00 2.88 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.411 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds