Wall clock time and date at job start Tue Mar 31 2020 00:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47181 * 286.74461 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00038 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.47083 * 120.87946 * 359.72064 * 9 7 6 11 11 C 1.53697 * 108.27375 * 128.75525 * 10 9 7 12 12 N 1.46898 * 109.25750 * 54.08657 * 11 10 9 13 13 C 1.46901 * 111.00098 * 172.60942 * 12 11 10 14 14 C 1.50697 * 109.46879 * 294.29685 * 13 12 11 15 15 H 1.08007 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00326 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99179 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47171 * 120.00132 * 18 16 14 21 21 H 1.48499 * 109.46771 * 239.99996 * 18 16 14 22 22 C 1.46906 * 111.26760 * 296.75378 * 12 11 10 23 23 C 1.47080 * 120.88393 * 180.02562 * 9 7 6 24 24 H 4.44648 * 5.63415 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.46457 * 166.74848 * 3 2 1 26 26 H 1.09002 * 109.47385 * 46.75131 * 3 2 1 27 27 H 1.09001 * 109.46652 * 60.00511 * 4 3 2 28 28 H 1.08992 * 109.47514 * 300.00600 * 4 3 2 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 32 32 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 33 33 H 1.09002 * 109.63083 * 248.52396 * 10 9 7 34 34 H 1.09003 * 109.62649 * 9.10519 * 10 9 7 35 35 H 1.09003 * 109.64936 * 294.07921 * 11 10 9 36 36 H 1.09004 * 109.42109 * 173.94847 * 11 10 9 37 37 H 1.08998 * 109.47197 * 54.29897 * 13 12 11 38 38 H 1.09000 * 109.47140 * 174.30034 * 13 12 11 39 39 H 0.97007 * 119.98988 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.49162 * 303.14782 * 22 12 11 41 41 H 1.08996 * 109.49528 * 183.06717 * 22 12 11 42 42 H 1.09000 * 109.62707 * 350.89188 * 23 9 7 43 43 H 1.08993 * 109.63428 * 111.47354 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.4147 1.3813 5 6 4.6862 -0.4134 1.3814 6 6 5.1965 -0.8294 2.7625 7 6 6.7034 -0.8275 2.7629 8 8 7.3098 -0.5229 1.7576 9 7 7.3775 -1.1642 3.8804 10 6 6.6620 -1.5309 5.1120 11 6 7.2224 -2.8711 5.6141 12 7 8.6810 -2.7651 5.7521 13 6 9.2375 -3.9634 6.3943 14 6 8.7410 -4.0486 7.8146 15 1 8.0780 -3.2888 8.2014 16 6 9.1323 -5.0970 8.6200 17 7 9.9393 -6.0224 8.1488 18 14 8.5162 -5.2030 10.3803 19 1 7.6271 -4.0479 10.6639 20 1 7.7588 -6.4670 10.5644 21 1 9.6726 -5.1787 11.3117 22 6 9.3225 -2.5176 4.4539 23 6 8.8482 -1.1684 3.9026 24 1 -1.0499 -0.0002 0.0001 25 1 3.0088 1.0012 -0.2356 26 1 3.0097 -0.7033 -0.7485 27 1 2.7934 -1.4152 1.6169 28 1 2.7926 0.2892 2.1298 29 1 5.0503 -1.1171 0.6329 30 1 5.0487 0.5873 1.1461 31 1 4.8324 -0.1259 3.5114 32 1 4.8340 -1.8301 2.9976 33 1 6.8150 -0.7604 5.8677 34 1 5.5977 -1.6338 4.9003 35 1 6.9807 -3.6596 4.9013 36 1 6.7817 -3.1082 6.5825 37 1 8.9213 -4.8501 5.8450 38 1 10.3259 -3.9041 6.3929 39 1 10.2148 -6.7599 8.7156 40 1 9.0516 -3.3109 3.7572 41 1 10.4049 -2.4984 4.5807 42 1 9.2300 -1.0316 2.8908 43 1 9.2070 -0.3638 4.5443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827483513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:57 Heat of formation + Delta-G solvation = 6.100837 kcal Electronic energy + Delta-G solvation = -21105.926312 eV Core-core repulsion = 17958.979707 eV Total energy + Delta-G solvation = -3146.946606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01930 -37.65435 -36.29892 -34.40133 -33.42266 -32.44600 -31.04439 -29.90695 -28.22367 -25.97720 -24.81812 -23.25286 -22.13299 -21.44970 -20.39964 -18.65433 -18.21366 -16.96791 -16.41694 -16.24495 -15.68753 -15.15234 -14.80297 -14.49812 -14.44735 -14.02500 -13.83897 -13.69532 -13.53215 -12.96370 -12.70803 -12.38727 -12.06143 -11.85861 -11.77224 -11.47175 -11.30347 -11.07457 -10.98312 -10.87958 -10.76410 -10.66315 -10.53038 -10.44526 -10.35633 -9.92429 -9.60591 -9.29408 -8.52989 -8.43737 -7.35616 -6.09191 -4.11289 2.53572 2.57557 2.73913 3.14047 3.26519 3.34360 3.38084 4.06560 4.36223 4.54452 4.66006 4.70873 4.77664 5.06317 5.09135 5.22891 5.26090 5.29359 5.37755 5.44362 5.49806 5.54328 5.56310 5.63556 5.73678 5.76344 5.77719 5.88327 6.02058 6.02563 6.14707 6.26694 6.42653 6.44268 6.68332 7.19296 7.25016 7.34922 7.56580 7.71761 7.98673 8.09151 8.28666 8.44386 8.96154 9.53401 11.01653 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.002953 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.029522 B = 9478.002551 C =10362.850683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.103 4.103 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.554 6.554 9 N -0.609 5.609 10 C 0.108 3.892 11 C 0.050 3.950 12 N -0.536 5.536 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.041 3.959 23 C 0.117 3.883 24 H 0.215 0.785 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.097 0.903 37 H -0.009 1.009 38 H 0.032 0.968 39 H 0.261 0.739 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.253 10.973 -11.956 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.141 4.141 6 C -0.180 4.180 7 C 0.301 3.699 8 O -0.432 6.432 9 N -0.343 5.343 10 C -0.015 4.015 11 C -0.080 4.080 12 N -0.261 5.261 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.147 4.147 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.088 4.088 23 C -0.005 4.005 24 H 0.232 0.768 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.115 0.885 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.718 11.359 -12.121 20.921 hybrid contribution -0.593 -1.025 0.634 1.343 sum -13.311 10.334 -11.486 20.394 Atomic orbital electron populations 1.24907 0.96001 1.01531 1.01034 1.23250 0.94685 1.00101 1.00282 1.18780 0.84452 1.03137 0.98802 1.21568 0.95441 1.02286 0.95951 1.21344 0.93741 1.03083 0.95972 1.21691 0.92315 1.04009 0.99980 1.20677 0.90209 0.76509 0.82549 1.90659 1.70534 1.49352 1.32702 1.48279 1.07483 1.66870 1.11629 1.22121 0.95541 0.98165 0.85629 1.22418 0.90490 0.93704 1.01351 1.62081 1.02827 1.42521 1.18670 1.19736 0.95511 0.84152 0.93798 1.21169 1.29071 1.08307 0.96218 0.91748 1.25009 0.95239 0.95617 0.98797 1.69973 1.34466 1.12674 1.36534 0.86434 0.78633 0.77866 0.84435 1.19626 1.21119 1.20989 1.22412 0.99776 0.95180 0.91471 1.21745 0.78904 0.98129 1.01732 0.76765 0.89437 0.89408 0.91395 0.91444 0.90971 0.90982 0.88923 0.88847 0.90572 0.90100 0.95689 0.88476 0.99108 0.95005 0.92908 0.95582 0.90099 0.89474 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.18 -1.68 13.34 -37.12 -0.50 -2.17 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.28 16 4 C -0.11 -0.88 5.17 -26.73 -0.14 -1.01 16 5 C -0.10 -0.95 4.50 -26.73 -0.12 -1.07 16 6 C -0.14 -1.39 4.06 -27.89 -0.11 -1.51 16 7 C 0.51 7.27 7.71 -10.99 -0.08 7.18 16 8 O -0.55 -9.56 15.44 5.55 0.09 -9.47 16 9 N -0.61 -8.95 3.00 -172.16 -0.52 -9.47 16 10 C 0.11 1.48 6.53 -3.36 -0.02 1.45 16 11 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 12 N -0.54 -10.98 4.62 -235.44 -1.09 -12.07 16 13 C 0.19 4.86 4.72 -4.98 -0.02 4.84 16 14 C -0.51 -13.71 8.41 -34.44 -0.29 -14.00 16 15 H 0.06 1.70 7.13 -52.48 -0.37 1.32 16 16 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.04 0.73 5.62 -3.68 -0.02 0.71 16 23 C 0.12 1.82 6.60 -3.58 -0.02 1.80 16 24 H 0.22 1.06 7.80 -54.10 -0.42 0.64 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.09 0.77 7.99 -51.93 -0.41 0.35 16 32 H 0.09 0.84 7.67 -51.93 -0.40 0.44 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.85 6.02 -51.93 -0.31 0.53 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 37 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 38 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 42 H 0.09 1.35 7.06 -51.93 -0.37 0.98 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -31.74 353.82 -8.76 -40.50 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.24 Total: -2.37 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.05 Total: -3.02 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.87 Total: -46.93 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.74 -8.76 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.603 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds