Wall clock time and date at job start Tue Mar 31 2020 00:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47181 * 286.74461 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00038 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.47083 * 120.87946 * 359.72064 * 9 7 6 11 11 C 1.53697 * 108.27375 * 128.75525 * 10 9 7 12 12 N 1.46898 * 109.25750 * 54.08657 * 11 10 9 13 13 C 1.46901 * 111.00098 * 172.60942 * 12 11 10 14 14 C 1.50697 * 109.46879 * 294.29685 * 13 12 11 15 15 H 1.08007 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00326 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99179 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47171 * 120.00132 * 18 16 14 21 21 H 1.48499 * 109.46771 * 239.99996 * 18 16 14 22 22 C 1.46906 * 111.26760 * 296.75378 * 12 11 10 23 23 C 1.47080 * 120.88393 * 180.02562 * 9 7 6 24 24 H 4.44648 * 5.63415 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.46457 * 166.74848 * 3 2 1 26 26 H 1.09002 * 109.47385 * 46.75131 * 3 2 1 27 27 H 1.09001 * 109.46652 * 60.00511 * 4 3 2 28 28 H 1.08992 * 109.47514 * 300.00600 * 4 3 2 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 32 32 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 33 33 H 1.09002 * 109.63083 * 248.52396 * 10 9 7 34 34 H 1.09003 * 109.62649 * 9.10519 * 10 9 7 35 35 H 1.09003 * 109.64936 * 294.07921 * 11 10 9 36 36 H 1.09004 * 109.42109 * 173.94847 * 11 10 9 37 37 H 1.08998 * 109.47197 * 54.29897 * 13 12 11 38 38 H 1.09000 * 109.47140 * 174.30034 * 13 12 11 39 39 H 0.97007 * 119.98988 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.49162 * 303.14782 * 22 12 11 41 41 H 1.08996 * 109.49528 * 183.06717 * 22 12 11 42 42 H 1.09000 * 109.62707 * 350.89188 * 23 9 7 43 43 H 1.08993 * 109.63428 * 111.47354 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.4147 1.3813 5 6 4.6862 -0.4134 1.3814 6 6 5.1965 -0.8294 2.7625 7 6 6.7034 -0.8275 2.7629 8 8 7.3098 -0.5229 1.7576 9 7 7.3775 -1.1642 3.8804 10 6 6.6620 -1.5309 5.1120 11 6 7.2224 -2.8711 5.6141 12 7 8.6810 -2.7651 5.7521 13 6 9.2375 -3.9634 6.3943 14 6 8.7410 -4.0486 7.8146 15 1 8.0780 -3.2888 8.2014 16 6 9.1323 -5.0970 8.6200 17 7 9.9393 -6.0224 8.1488 18 14 8.5162 -5.2030 10.3803 19 1 7.6271 -4.0479 10.6639 20 1 7.7588 -6.4670 10.5644 21 1 9.6726 -5.1787 11.3117 22 6 9.3225 -2.5176 4.4539 23 6 8.8482 -1.1684 3.9026 24 1 -1.0499 -0.0002 0.0001 25 1 3.0088 1.0012 -0.2356 26 1 3.0097 -0.7033 -0.7485 27 1 2.7934 -1.4152 1.6169 28 1 2.7926 0.2892 2.1298 29 1 5.0503 -1.1171 0.6329 30 1 5.0487 0.5873 1.1461 31 1 4.8324 -0.1259 3.5114 32 1 4.8340 -1.8301 2.9976 33 1 6.8150 -0.7604 5.8677 34 1 5.5977 -1.6338 4.9003 35 1 6.9807 -3.6596 4.9013 36 1 6.7817 -3.1082 6.5825 37 1 8.9213 -4.8501 5.8450 38 1 10.3259 -3.9041 6.3929 39 1 10.2148 -6.7599 8.7156 40 1 9.0516 -3.3109 3.7572 41 1 10.4049 -2.4984 4.5807 42 1 9.2300 -1.0316 2.8908 43 1 9.2070 -0.3638 4.5443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:56 Heat of formation + Delta-G solvation = -13.280710 kcal Electronic energy + Delta-G solvation = -21106.766759 eV Core-core repulsion = 17958.979707 eV Total energy + Delta-G solvation = -3147.787053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20558 -39.04434 -37.00280 -35.94492 -34.45077 -34.07216 -32.28066 -30.78487 -29.86715 -27.44208 -25.90905 -24.60045 -23.75488 -22.42406 -21.63870 -19.79694 -18.83952 -18.49135 -18.12156 -17.06123 -16.85595 -16.66312 -16.07491 -15.99253 -15.52060 -15.30553 -15.05735 -14.85716 -14.66854 -14.15708 -13.86559 -13.74729 -13.52165 -13.08847 -12.75014 -12.67685 -12.61366 -12.54500 -12.40713 -12.24178 -12.13884 -12.06395 -11.75589 -11.57412 -11.26680 -11.09743 -10.94835 -10.74309 -10.62643 -9.74117 -9.06091 -8.20277 -6.30648 1.43555 1.44629 1.57772 1.64185 1.88995 1.95346 2.03912 2.41416 3.12486 3.23292 3.43936 3.64282 3.93386 4.02377 4.06011 4.07576 4.23290 4.29650 4.41924 4.42538 4.47533 4.53874 4.65245 4.74201 4.76609 4.84783 4.89546 4.93577 4.95679 5.03281 5.12329 5.20030 5.23422 5.24187 5.36429 5.44207 5.50947 5.64344 6.02328 6.23951 6.47308 6.56119 6.74563 6.85755 7.16761 7.39536 8.91353 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.002953 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.029522 B = 9478.002551 C =10362.850683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C -0.017 4.017 4 C -0.105 4.105 5 C -0.098 4.098 6 C -0.135 4.135 7 C 0.508 3.492 8 O -0.588 6.588 9 N -0.615 5.615 10 C 0.120 3.880 11 C 0.047 3.953 12 N -0.539 5.539 13 C 0.207 3.793 14 C -0.519 4.519 15 H 0.071 0.929 16 C -0.002 4.002 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.257 1.257 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.044 3.956 23 C 0.126 3.874 24 H 0.241 0.759 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.015 0.985 36 H 0.087 0.913 37 H -0.042 1.042 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.013 0.987 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.694 12.355 -11.143 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.216 4.216 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.174 4.174 7 C 0.299 3.701 8 O -0.469 6.469 9 N -0.348 5.348 10 C -0.002 4.002 11 C -0.082 4.082 12 N -0.264 5.264 13 C 0.081 3.919 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.181 1.181 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.086 4.086 23 C 0.003 3.997 24 H 0.257 0.743 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.033 0.967 36 H 0.105 0.895 37 H -0.024 1.024 38 H 0.021 0.979 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.183 12.763 -11.317 22.836 hybrid contribution 0.178 -1.460 0.296 1.501 sum -15.005 11.302 -11.021 21.780 Atomic orbital electron populations 1.25687 0.96969 1.00650 1.00081 1.23739 0.95568 1.01010 1.01237 1.18824 0.84005 1.03604 0.98961 1.21461 0.93980 1.02606 0.96156 1.21270 0.94773 1.02241 0.95286 1.21777 0.88764 1.05736 1.01160 1.21451 0.91901 0.75227 0.81505 1.90647 1.71649 1.50805 1.33833 1.48395 1.07027 1.66983 1.12365 1.22137 0.97245 0.95562 0.85277 1.22495 0.88550 0.96265 1.00864 1.62017 1.04724 1.39646 1.20023 1.19387 0.93890 0.84896 0.93730 1.21483 1.28931 1.08417 0.96873 0.91087 1.25970 0.95310 0.95178 1.03492 1.70112 1.35870 1.13447 1.38357 0.85288 0.78159 0.78320 0.78574 1.18066 1.20656 1.20828 1.22433 0.99729 0.96372 0.90021 1.21564 0.80105 0.96442 1.01580 0.74283 0.88859 0.89212 0.91202 0.90668 0.92359 0.91678 0.86201 0.87228 0.89590 0.86006 0.96681 0.89471 1.02386 0.97869 0.92772 0.96855 0.90318 0.89503 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.17 19.25 74.32 1.43 -1.74 16 2 C -0.22 -3.62 13.34 31.13 0.42 -3.21 16 3 C -0.02 -0.24 5.70 28.79 0.16 -0.08 16 4 C -0.10 -1.35 5.17 30.59 0.16 -1.19 16 5 C -0.10 -1.60 4.50 30.59 0.14 -1.46 16 6 C -0.14 -2.26 4.06 29.85 0.12 -2.14 16 7 C 0.51 13.43 7.71 87.66 0.68 14.10 16 8 O -0.59 -19.80 15.44 -3.05 -0.05 -19.85 16 9 N -0.61 -16.87 3.00 -816.97 -2.45 -19.33 16 10 C 0.12 2.93 6.53 86.50 0.57 3.49 16 11 C 0.05 1.63 5.47 86.54 0.47 2.10 16 12 N -0.54 -22.33 4.62 -898.79 -4.15 -26.48 16 13 C 0.21 10.83 4.72 85.56 0.40 11.23 16 14 C -0.52 -28.21 8.41 25.60 0.22 -27.99 16 15 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 16 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 17 N -0.94 -55.76 13.29 21.45 0.28 -55.48 16 18 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.04 1.58 5.62 86.39 0.49 2.07 16 23 C 0.13 3.83 6.60 86.36 0.57 4.40 16 24 H 0.24 1.77 7.80 -4.42 -0.03 1.74 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 30 H 0.06 1.16 8.10 -2.39 -0.02 1.15 16 31 H 0.12 1.42 7.99 -2.39 -0.02 1.40 16 32 H 0.11 1.55 7.67 -2.39 -0.02 1.53 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.12 2.00 6.02 -2.39 -0.01 1.99 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 3.19 6.67 -2.39 -0.02 3.17 16 37 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 38 H 0.00 0.18 7.97 -2.39 -0.02 0.16 16 39 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.08 2.83 7.99 -2.39 -0.02 2.82 16 42 H 0.09 2.67 7.06 -2.39 -0.02 2.65 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -69.93 353.82 2.90 -67.04 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.96 Total: 9.32 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.28 Total: -0.05 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -6.32 Total: -101.28 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -69.93 2.90 -67.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.757 kcal (2) G-P(sol) polarization free energy of solvation -69.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds