Wall clock time and date at job start Tue Mar 31 2020 00:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47597 * 2 1 4 4 C 1.47200 * 109.47003 * 120.00104 * 2 1 3 5 5 C 2.64599 * 109.47153 * 120.00047 * 2 1 3 6 6 C 4.07802 * 109.47024 * 120.00091 * 2 1 3 7 7 O 1.21616 * 119.99844 * 101.50950 * 6 5 4 8 8 N 1.34774 * 120.00154 * 281.50565 * 6 5 4 9 9 C 1.46494 * 120.00169 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47280 * 179.97438 * 9 8 6 11 11 C 1.53349 * 109.42091 * 295.12817 * 10 9 8 12 12 C 1.53196 * 109.15353 * 178.67328 * 11 10 9 13 13 N 1.46928 * 108.89135 * 54.57497 * 12 11 10 14 14 C 1.36936 * 120.63013 * 126.29699 * 13 12 11 15 15 H 1.07999 * 120.00022 * 331.83633 * 14 13 12 16 16 C 1.38813 * 120.00005 * 151.82709 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.09585 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.09475 * 16 14 13 19 19 H 1.48494 * 109.47083 * 60.00061 * 18 16 14 20 20 H 1.48500 * 109.46851 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47024 * 300.00112 * 18 16 14 22 22 C 1.46924 * 118.73859 * 306.32337 * 13 12 11 23 23 C 1.53044 * 109.46279 * 174.99967 * 10 9 8 24 24 H 1.08997 * 109.47543 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46913 * 300.00359 * 1 2 3 26 26 H 1.09006 * 109.47002 * 59.99630 * 1 2 3 27 27 H 1.09008 * 109.47173 * 239.99838 * 2 1 3 28 28 H 1.09000 * 109.47893 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47246 * 300.00221 * 3 2 1 30 30 H 1.09001 * 109.47208 * 59.99412 * 3 2 1 31 31 H 0.96999 * 119.99862 * 0.02562 * 8 6 5 32 32 H 1.08996 * 109.47191 * 59.99822 * 9 8 6 33 33 H 1.08998 * 109.47122 * 300.00127 * 9 8 6 34 34 H 1.09003 * 109.46065 * 55.02896 * 10 9 8 35 35 H 1.08998 * 109.68701 * 58.70817 * 11 10 9 36 36 H 1.09000 * 109.47234 * 298.50885 * 11 10 9 37 37 H 1.08996 * 109.58345 * 294.72319 * 12 11 10 38 38 H 1.08994 * 109.58644 * 174.43734 * 12 11 10 39 39 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.58664 * 173.39523 * 22 13 12 41 41 H 1.08996 * 109.58580 * 293.67452 * 22 13 12 42 42 H 1.08992 * 109.49619 * 61.43154 * 23 10 9 43 43 H 1.08999 * 109.52313 * 301.35168 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1604 6 6 2.8892 -1.9225 3.3297 7 8 3.7499 -2.7759 3.2303 8 7 2.3847 -1.6120 4.5402 9 6 2.8733 -2.3023 5.7364 10 6 2.1425 -1.7660 6.9690 11 6 2.5026 -0.2894 7.1730 12 6 1.7421 0.2500 8.3886 13 7 2.0269 -0.6079 9.5469 14 6 2.4936 -0.0691 10.7162 15 1 3.0732 0.8419 10.6975 16 6 2.2215 -0.6939 11.9255 17 7 1.2616 -1.5913 12.0013 18 14 3.2177 -0.2611 13.4453 19 1 3.0603 1.1847 13.7451 20 1 2.7341 -1.0619 14.5987 21 1 4.6509 -0.5627 13.2002 22 6 1.8019 -2.0548 9.4267 23 6 2.5615 -2.5717 8.2009 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6980 -0.9315 4.6194 32 1 3.9438 -2.1279 5.8447 33 1 2.6874 -3.3719 5.6401 34 1 1.0664 -1.8598 6.8225 35 1 2.2249 0.2820 6.2873 36 1 3.5750 -0.1973 7.3446 37 1 0.6718 0.2426 8.1828 38 1 2.0666 1.2689 8.5999 39 1 1.0718 -2.0281 12.8463 40 1 2.1681 -2.5572 10.3220 41 1 0.7362 -2.2502 9.3081 42 1 3.6333 -2.4582 8.3625 43 1 2.3265 -3.6246 8.0447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828676904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:54 Heat of formation + Delta-G solvation = 11.578983 kcal Electronic energy + Delta-G solvation = -20976.841113 eV Core-core repulsion = 17830.132057 eV Total energy + Delta-G solvation = -3146.709056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.75022 -37.81388 -36.72810 -34.99746 -32.99104 -32.09601 -30.75197 -29.73156 -27.64254 -27.13736 -24.67307 -23.47101 -22.28972 -21.60682 -20.98227 -19.32919 -18.58140 -16.75303 -16.33728 -16.11051 -15.40143 -15.07094 -14.84746 -14.22843 -14.10941 -13.86574 -13.58027 -13.46725 -13.16591 -12.69106 -12.48997 -12.38276 -12.34836 -11.94468 -11.88851 -11.80453 -11.35446 -11.00885 -10.72827 -10.67170 -10.55150 -10.52860 -10.29089 -10.24255 -10.22145 -9.91573 -9.56746 -9.46861 -9.07947 -8.46751 -6.67312 -5.79234 -3.21747 1.44253 2.12245 3.02654 3.38424 3.42694 3.44268 3.45715 3.99754 4.49631 4.51094 4.66774 4.73766 5.02454 5.16048 5.16869 5.21457 5.35150 5.36205 5.39803 5.41447 5.55397 5.59289 5.75688 5.76168 5.83329 5.90535 6.02517 6.11229 6.30748 6.34611 6.44008 6.59008 6.67151 6.74782 6.80026 6.96773 7.03279 7.35098 7.41133 7.65450 7.79127 8.06341 8.45300 9.21413 9.84842 10.41564 11.29352 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.002884 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.518439 B = 9704.929023 C =10086.513267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.147 4.147 4 C -0.081 4.081 5 C -0.220 4.220 6 C 0.628 3.372 7 O -0.529 6.529 8 N -0.710 5.710 9 C 0.123 3.877 10 C -0.090 4.090 11 C -0.128 4.128 12 C 0.145 3.855 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.904 5.904 18 Si 0.902 3.098 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.171 3.829 23 C -0.132 4.132 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.404 0.596 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.052 0.948 39 H 0.254 0.746 40 H 0.088 0.912 41 H 0.018 0.982 42 H 0.058 0.942 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 3.175 -21.567 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 C -0.204 4.204 4 C -0.083 4.083 5 C -0.223 4.223 6 C 0.415 3.585 7 O -0.407 6.407 8 N -0.361 5.361 9 C 0.000 4.000 10 C -0.109 4.109 11 C -0.168 4.168 12 C 0.019 3.981 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.046 3.954 23 C -0.172 4.172 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.239 0.761 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.183 2.467 -21.413 21.587 hybrid contribution 0.151 0.457 0.856 0.982 sum -1.032 2.924 -20.556 20.789 Atomic orbital electron populations 1.21850 0.92710 1.02853 1.02971 1.18503 0.96290 0.95257 0.90908 1.21847 1.01798 0.93775 1.02962 1.22613 0.95514 0.94916 0.95264 1.20824 1.02884 1.01692 0.96853 1.14721 0.81445 0.81528 0.80847 1.90854 1.31251 1.32345 1.86261 1.45964 1.42149 1.41867 1.06093 1.21689 0.99224 0.96398 0.82695 1.21382 0.99561 0.96573 0.93418 1.22146 1.01419 0.94536 0.98670 1.20880 0.95536 0.94290 0.87406 1.44039 1.76464 1.01550 1.09454 1.19142 1.26085 1.09380 0.83684 0.91801 1.25044 0.97106 0.99983 0.97492 1.70017 1.29255 1.30205 1.25315 0.86372 0.80070 0.77835 0.82505 1.20901 1.21628 1.21017 1.20766 0.95523 0.84325 0.94836 1.22175 1.01507 0.97504 0.96041 0.91973 0.91802 0.91158 0.88272 0.91954 0.91146 0.91808 0.76088 0.91165 0.91333 0.91189 0.93447 0.92079 0.96610 0.92895 0.93572 0.89385 0.96402 0.92305 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.15 37.16 0.34 -0.46 16 2 C 0.01 0.06 3.30 -93.41 -0.31 -0.25 16 3 C -0.15 -0.82 9.15 37.16 0.34 -0.48 16 4 C -0.08 -0.84 12.56 -37.12 -0.47 -1.30 16 5 C -0.22 -2.82 13.61 -38.84 -0.53 -3.35 16 6 C 0.63 9.32 7.65 -14.33 -0.11 9.21 16 7 O -0.53 -9.74 17.09 5.26 0.09 -9.65 16 8 N -0.71 -9.22 5.26 -62.77 -0.33 -9.55 16 9 C 0.12 1.75 5.06 -4.05 -0.02 1.73 16 10 C -0.09 -1.41 2.19 -90.42 -0.20 -1.61 16 11 C -0.13 -2.10 5.27 -26.45 -0.14 -2.24 16 12 C 0.15 2.94 6.51 -3.71 -0.02 2.92 16 13 N -0.59 -14.59 2.99 -172.32 -0.52 -15.11 16 14 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 15 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -26.08 11.20 55.49 0.62 -25.46 16 18 Si 0.90 21.63 29.59 -169.99 -5.03 16.61 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 23 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.40 4.42 7.62 -40.82 -0.31 4.11 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.64 7.16 -51.93 -0.37 0.27 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -31.70 354.15 -8.63 -40.34 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.30 Total: -1.00 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.51 Total: -1.51 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.23 Total: -50.12 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.70 -8.63 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828676904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.915 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds