Wall clock time and date at job start Tue Mar 31 2020 00:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47597 * 2 1 4 4 C 1.47200 * 109.47003 * 120.00104 * 2 1 3 5 5 C 2.64599 * 109.47153 * 120.00047 * 2 1 3 6 6 C 4.07802 * 109.47024 * 120.00091 * 2 1 3 7 7 O 1.21616 * 119.99844 * 101.50950 * 6 5 4 8 8 N 1.34774 * 120.00154 * 281.50565 * 6 5 4 9 9 C 1.46494 * 120.00169 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47280 * 179.97438 * 9 8 6 11 11 C 1.53349 * 109.42091 * 295.12817 * 10 9 8 12 12 C 1.53196 * 109.15353 * 178.67328 * 11 10 9 13 13 N 1.46928 * 108.89135 * 54.57497 * 12 11 10 14 14 C 1.36936 * 120.63013 * 126.29699 * 13 12 11 15 15 H 1.07999 * 120.00022 * 331.83633 * 14 13 12 16 16 C 1.38813 * 120.00005 * 151.82709 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.09585 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.09475 * 16 14 13 19 19 H 1.48494 * 109.47083 * 60.00061 * 18 16 14 20 20 H 1.48500 * 109.46851 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47024 * 300.00112 * 18 16 14 22 22 C 1.46924 * 118.73859 * 306.32337 * 13 12 11 23 23 C 1.53044 * 109.46279 * 174.99967 * 10 9 8 24 24 H 1.08997 * 109.47543 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46913 * 300.00359 * 1 2 3 26 26 H 1.09006 * 109.47002 * 59.99630 * 1 2 3 27 27 H 1.09008 * 109.47173 * 239.99838 * 2 1 3 28 28 H 1.09000 * 109.47893 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47246 * 300.00221 * 3 2 1 30 30 H 1.09001 * 109.47208 * 59.99412 * 3 2 1 31 31 H 0.96999 * 119.99862 * 0.02562 * 8 6 5 32 32 H 1.08996 * 109.47191 * 59.99822 * 9 8 6 33 33 H 1.08998 * 109.47122 * 300.00127 * 9 8 6 34 34 H 1.09003 * 109.46065 * 55.02896 * 10 9 8 35 35 H 1.08998 * 109.68701 * 58.70817 * 11 10 9 36 36 H 1.09000 * 109.47234 * 298.50885 * 11 10 9 37 37 H 1.08996 * 109.58345 * 294.72319 * 12 11 10 38 38 H 1.08994 * 109.58644 * 174.43734 * 12 11 10 39 39 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.58664 * 173.39523 * 22 13 12 41 41 H 1.08996 * 109.58580 * 293.67452 * 22 13 12 42 42 H 1.08992 * 109.49619 * 61.43154 * 23 10 9 43 43 H 1.08999 * 109.52313 * 301.35168 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1604 6 6 2.8892 -1.9225 3.3297 7 8 3.7499 -2.7759 3.2303 8 7 2.3847 -1.6120 4.5402 9 6 2.8733 -2.3023 5.7364 10 6 2.1425 -1.7660 6.9690 11 6 2.5026 -0.2894 7.1730 12 6 1.7421 0.2500 8.3886 13 7 2.0269 -0.6079 9.5469 14 6 2.4936 -0.0691 10.7162 15 1 3.0732 0.8419 10.6975 16 6 2.2215 -0.6939 11.9255 17 7 1.2616 -1.5913 12.0013 18 14 3.2177 -0.2611 13.4453 19 1 3.0603 1.1847 13.7451 20 1 2.7341 -1.0619 14.5987 21 1 4.6509 -0.5627 13.2002 22 6 1.8019 -2.0548 9.4267 23 6 2.5615 -2.5717 8.2009 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6980 -0.9315 4.6194 32 1 3.9438 -2.1279 5.8447 33 1 2.6874 -3.3719 5.6401 34 1 1.0664 -1.8598 6.8225 35 1 2.2249 0.2820 6.2873 36 1 3.5750 -0.1973 7.3446 37 1 0.6718 0.2426 8.1828 38 1 2.0666 1.2689 8.5999 39 1 1.0718 -2.0281 12.8463 40 1 2.1681 -2.5572 10.3220 41 1 0.7362 -2.2502 9.3081 42 1 3.6333 -2.4582 8.3625 43 1 2.3265 -3.6246 8.0447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828676904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:53 Heat of formation + Delta-G solvation = -7.341629 kcal Electronic energy + Delta-G solvation = -20977.661572 eV Core-core repulsion = 17830.132057 eV Total energy + Delta-G solvation = -3147.529515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93175 -39.34654 -37.32983 -36.47761 -34.57389 -33.12470 -32.36352 -31.39702 -28.65388 -28.04347 -26.22093 -24.67303 -23.77879 -22.77223 -22.25696 -20.84008 -19.73808 -18.63571 -17.32125 -17.02734 -16.81267 -16.54175 -15.76151 -15.62748 -15.31262 -15.29329 -15.02809 -14.79299 -14.34301 -14.07361 -13.87095 -13.47733 -13.07689 -13.01743 -12.97947 -12.82735 -12.55632 -12.42785 -12.31832 -12.28731 -12.04539 -11.85204 -11.74014 -11.58854 -11.36541 -11.18169 -11.17471 -11.10697 -10.52768 -10.22863 -8.66790 -7.87283 -5.32279 0.46054 1.23385 1.46341 1.49051 1.55508 2.02777 2.42678 2.51472 3.15748 3.27182 3.70572 3.79705 3.90572 4.04925 4.06154 4.15174 4.18639 4.47150 4.49190 4.53418 4.66464 4.72319 4.79203 4.81124 4.92746 4.94858 4.96100 5.00484 5.11071 5.12778 5.23154 5.27519 5.29719 5.34370 5.36435 5.41924 5.54955 5.65951 5.79056 6.17628 6.34336 6.40261 6.98543 7.16087 7.88297 8.38964 9.18818 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.002884 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.518439 B = 9704.929023 C =10086.513267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 C -0.145 4.145 4 C -0.041 4.041 5 C -0.274 4.274 6 C 0.631 3.369 7 O -0.574 6.574 8 N -0.698 5.698 9 C 0.134 3.866 10 C -0.078 4.078 11 C -0.116 4.116 12 C 0.140 3.860 13 N -0.612 5.612 14 C -0.264 4.264 15 H 0.064 0.936 16 C -0.051 4.051 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.280 1.280 22 C 0.177 3.823 23 C -0.122 4.122 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.416 0.584 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.018 0.982 38 H 0.051 0.949 39 H 0.250 0.750 40 H 0.051 0.949 41 H -0.001 1.001 42 H 0.051 0.949 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 4.408 -23.938 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.202 4.202 4 C -0.044 4.044 5 C -0.276 4.276 6 C 0.419 3.581 7 O -0.455 6.455 8 N -0.348 5.348 9 C 0.011 3.989 10 C -0.097 4.097 11 C -0.155 4.155 12 C 0.015 3.985 13 N -0.336 5.336 14 C -0.394 4.394 15 H 0.082 0.918 16 C -0.246 4.246 17 N -0.581 5.581 18 Si 0.793 3.207 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.206 1.206 22 C 0.051 3.949 23 C -0.161 4.161 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.253 0.747 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.017 0.983 42 H 0.070 0.930 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.376 3.740 -23.804 24.135 hybrid contribution 0.135 0.150 1.500 1.513 sum -1.242 3.891 -22.304 22.675 Atomic orbital electron populations 1.21865 0.91473 1.02903 1.03962 1.18874 0.97213 0.95708 0.89682 1.21865 1.01442 0.92965 1.03966 1.23485 0.93154 0.92943 0.94820 1.20600 1.05399 1.03888 0.97754 1.14899 0.80679 0.80879 0.81619 1.90821 1.33338 1.34436 1.86948 1.45799 1.42004 1.41715 1.05319 1.21431 0.98542 0.96551 0.82378 1.21212 1.00147 0.95653 0.92698 1.22003 1.00202 0.95197 0.98089 1.21057 0.96193 0.93865 0.87404 1.44325 1.76726 1.02536 1.10008 1.19473 1.25712 1.09300 0.84937 0.91793 1.25779 0.98187 1.00400 1.00228 1.70167 1.30816 1.31493 1.25590 0.85378 0.78595 0.77714 0.78993 1.20070 1.21998 1.20595 1.20577 0.94825 0.83931 0.95566 1.21973 1.00200 0.98927 0.95026 0.92418 0.92210 0.88850 0.86393 0.92565 0.88771 0.92258 0.74676 0.91836 0.91126 0.90319 0.89932 0.92951 0.96391 0.93048 0.94106 0.93008 0.98261 0.92985 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.15 71.98 0.66 -0.47 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.15 -1.18 9.15 71.98 0.66 -0.52 16 4 C -0.04 -0.78 12.56 31.13 0.39 -0.39 16 5 C -0.27 -6.71 13.61 30.02 0.41 -6.31 16 6 C 0.63 18.27 7.65 85.49 0.65 18.93 16 7 O -0.57 -21.16 17.09 -4.08 -0.07 -21.23 16 8 N -0.70 -16.97 5.26 -470.77 -2.48 -19.44 16 9 C 0.13 3.61 5.06 86.38 0.44 4.05 16 10 C -0.08 -2.31 2.19 -10.66 -0.02 -2.33 16 11 C -0.12 -3.56 5.27 30.78 0.16 -3.40 16 12 C 0.14 5.56 6.51 86.36 0.56 6.12 16 13 N -0.61 -30.46 2.99 -699.11 -2.09 -32.56 16 14 C -0.26 -14.57 9.58 84.03 0.81 -13.77 16 15 H 0.06 3.45 7.88 -2.91 -0.02 3.42 16 16 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 17 N -0.93 -55.43 11.20 21.65 0.24 -55.19 16 18 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 C 0.18 8.40 5.30 86.36 0.46 8.86 16 23 C -0.12 -4.39 5.36 30.67 0.16 -4.23 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 27 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.42 8.09 7.62 -92.71 -0.71 7.38 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 1.98 7.16 -2.39 -0.02 1.97 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 39 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 41 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -70.37 354.15 3.62 -66.75 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.28 Total: 10.44 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.71 Total: 4.11 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -4.33 Total: -107.19 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.07 Total: -21.23 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -70.37 3.62 -66.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828676904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.405 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds