Wall clock time and date at job start Tue Mar 31 2020 00:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46943 * 2 1 4 4 C 1.50703 * 109.47267 * 119.99545 * 2 1 3 5 5 C 1.34333 * 126.44067 * 119.99906 * 4 2 1 6 6 N 1.34470 * 107.67141 * 179.97438 * 5 4 2 7 7 C 1.30265 * 108.69849 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.61790 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47358 * 90.02348 * 8 7 6 10 10 C 1.46844 * 110.99734 * 293.94784 * 9 8 7 11 11 C 1.53044 * 109.52351 * 174.16205 * 10 9 8 12 12 C 1.53114 * 109.27620 * 59.18200 * 11 10 9 13 13 C 1.53122 * 109.15993 * 302.34480 * 12 11 10 14 14 H 1.09000 * 109.50351 * 297.67604 * 13 12 11 15 15 C 1.50708 * 109.50127 * 177.59814 * 13 12 11 16 16 H 1.07991 * 119.99789 * 240.00607 * 15 13 12 17 17 C 1.37877 * 120.00008 * 59.99918 * 15 13 12 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.46847 * 110.99870 * 169.74413 * 9 8 7 24 24 O 1.33970 * 108.75937 * 0.22558 * 7 6 5 25 25 H 1.08998 * 109.46773 * 299.99778 * 1 2 3 26 26 H 1.08999 * 109.47205 * 59.99804 * 1 2 3 27 27 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47513 * 240.00155 * 2 1 3 29 29 H 1.09000 * 109.46917 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46750 * 299.99656 * 3 2 1 31 31 H 1.08998 * 109.47205 * 60.00486 * 3 2 1 32 32 H 1.08007 * 126.16451 * 359.94884 * 5 4 2 33 33 H 1.09006 * 109.47385 * 330.02045 * 8 7 6 34 34 H 1.09003 * 109.47091 * 210.01993 * 8 7 6 35 35 H 1.09006 * 109.45970 * 54.15049 * 10 9 8 36 36 H 1.08998 * 109.46780 * 294.17822 * 10 9 8 37 37 H 1.09005 * 109.50098 * 299.23981 * 11 10 9 38 38 H 1.08999 * 109.53764 * 179.14860 * 11 10 9 39 39 H 1.09008 * 109.52033 * 182.44299 * 12 11 10 40 40 H 1.08993 * 109.57636 * 62.28390 * 12 11 10 41 41 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.46702 * 65.82562 * 23 9 8 43 43 H 1.09003 * 109.46567 * 305.85129 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8078 -1.8069 1.2582 6 7 3.0288 -2.1182 2.5476 7 6 2.4140 -1.2491 3.2983 8 6 2.4075 -1.2399 4.8052 9 7 3.5358 -0.4366 5.2949 10 6 4.8175 -1.0675 4.9550 11 6 5.9664 -0.1365 5.3495 12 6 5.8967 0.1430 6.8533 13 6 4.5337 0.7551 7.1881 14 1 4.4248 1.7072 6.6688 15 6 4.4342 0.9789 8.6752 16 1 3.6570 0.4904 9.2439 17 6 5.3357 1.8072 9.3095 18 7 5.2492 2.0021 10.6072 19 14 6.6797 2.6526 8.3255 20 1 7.8842 1.7848 8.2853 21 1 7.0234 3.9469 8.9673 22 1 6.2002 2.8982 6.9417 23 6 3.4264 -0.2018 6.7403 24 8 1.7839 -0.3680 2.5099 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1854 -2.3423 0.3995 33 1 2.5008 -2.2610 5.1752 34 1 1.4724 -0.8081 5.1619 35 1 4.8558 -1.2570 3.8822 36 1 4.9126 -2.0102 5.4938 37 1 5.8797 0.8012 4.8006 38 1 6.9183 -0.6109 5.1112 39 1 6.6872 0.8402 7.1312 40 1 6.0228 -0.7890 7.4043 41 1 5.8832 2.5852 11.0533 42 1 3.5281 -1.1485 7.2709 43 1 2.4543 0.2374 6.9644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852320006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:24 Heat of formation + Delta-G solvation = 14.977087 kcal Electronic energy + Delta-G solvation = -22095.974739 eV Core-core repulsion = 18949.413036 eV Total energy + Delta-G solvation = -3146.561703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.31334 -38.52583 -35.98007 -34.71495 -34.02972 -32.19035 -30.33803 -29.71231 -27.48643 -26.64409 -24.93845 -23.09655 -22.66989 -21.77459 -21.06467 -20.27598 -18.89143 -16.95776 -16.80853 -16.53816 -15.62403 -15.43122 -14.86790 -14.47610 -14.28955 -13.99135 -13.63574 -13.42006 -13.39449 -13.09019 -12.70740 -12.50255 -12.37000 -12.16061 -11.89839 -11.59840 -11.54717 -11.34331 -11.30380 -11.04961 -11.03385 -10.51911 -10.41146 -10.08552 -9.97979 -9.70989 -9.14589 -8.93831 -8.70668 -8.50820 -7.96849 -6.06601 -4.05919 1.45095 2.61952 2.70995 3.29840 3.41034 3.44553 3.99547 4.36107 4.43386 4.43878 4.59987 4.75054 4.95277 5.08183 5.25032 5.27293 5.30969 5.39056 5.49306 5.52310 5.53683 5.57087 5.62328 5.77309 5.83787 5.89533 5.94518 6.01813 6.08009 6.12715 6.26575 6.30735 6.32456 6.48368 6.59739 6.78266 6.83604 7.17350 7.33047 7.43666 7.62824 7.79251 7.84103 8.51549 8.96222 9.56230 11.06538 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.003960 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.915135 B = 7068.450872 C = 7228.830778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.006 4.006 3 C -0.150 4.150 4 C -0.046 4.046 5 C -0.044 4.044 6 N -0.484 5.484 7 C 0.213 3.787 8 C 0.146 3.854 9 N -0.539 5.539 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.123 4.123 13 C 0.021 3.979 14 H 0.036 0.964 15 C -0.514 4.514 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.264 1.264 23 C 0.078 3.922 24 O -0.188 6.188 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.178 0.822 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.263 0.737 42 H 0.033 0.967 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 -5.428 -21.333 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 C -0.207 4.207 4 C -0.099 4.099 5 C -0.183 4.183 6 N -0.214 5.214 7 C 0.006 3.994 8 C 0.017 3.983 9 N -0.265 5.265 10 C -0.068 4.068 11 C -0.156 4.156 12 C -0.160 4.160 13 C 0.002 3.998 14 H 0.054 0.946 15 C -0.553 4.553 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.540 5.540 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.189 1.189 23 C -0.048 4.048 24 O -0.074 6.074 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.196 0.804 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.570 -5.346 -21.131 22.766 hybrid contribution 0.597 0.170 -0.339 0.707 sum -5.973 -5.177 -21.471 22.880 Atomic orbital electron populations 1.21880 0.93601 1.02424 1.02745 1.19705 0.96417 0.96057 0.90304 1.21884 1.01686 0.94433 1.02743 1.23385 1.03387 0.99048 0.84129 1.23014 1.02426 0.97706 0.95109 1.70462 1.21967 1.26882 1.02044 1.26233 0.92323 0.85074 0.95779 1.20403 0.97595 0.98974 0.81360 1.61981 1.00788 1.46063 1.17686 1.22087 0.88978 0.95454 1.00239 1.21649 0.96225 0.99331 0.98438 1.22038 1.00225 1.00759 0.93012 1.19166 0.89552 0.94371 0.96745 0.94586 1.20976 1.15481 1.28356 0.90452 0.90839 1.24969 0.97453 0.95938 0.94668 1.69896 1.37357 1.38109 1.08634 0.86837 0.82414 0.78225 0.80736 1.20688 1.22622 1.18854 1.22145 1.01116 0.99074 0.82443 1.84392 1.58546 1.48417 1.16057 0.91932 0.91569 0.92279 0.88192 0.92108 0.91609 0.91806 0.80448 0.90615 0.87996 0.91172 0.94837 0.92036 0.92670 0.93515 0.92384 0.92671 0.94893 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.18 37.16 0.34 -0.77 16 2 C -0.01 -0.05 3.33 -91.77 -0.31 -0.36 16 3 C -0.15 -1.26 9.18 37.16 0.34 -0.92 16 4 C -0.05 -0.55 5.89 -35.68 -0.21 -0.76 16 5 C -0.04 -0.55 11.78 -17.77 -0.21 -0.76 16 6 N -0.48 -7.35 10.39 -11.10 -0.12 -7.46 16 7 C 0.21 3.23 6.99 -12.94 -0.09 3.14 16 8 C 0.15 2.13 5.59 -4.98 -0.03 2.11 16 9 N -0.54 -9.49 4.65 -236.11 -1.10 -10.59 16 10 C 0.06 1.04 5.31 -3.83 -0.02 1.02 16 11 C -0.12 -2.19 6.09 -26.65 -0.16 -2.36 16 12 C -0.12 -2.68 4.73 -26.61 -0.13 -2.80 16 13 C 0.02 0.49 1.85 -91.68 -0.17 0.32 16 14 H 0.04 0.89 7.21 -51.93 -0.37 0.52 16 15 C -0.51 -14.25 9.15 -34.44 -0.31 -14.56 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 18 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 19 Si 0.89 22.20 24.35 -169.99 -4.14 18.06 16 20 H -0.28 -6.83 6.89 56.52 0.39 -6.44 16 21 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 23 C 0.08 1.54 4.68 -3.83 -0.02 1.53 16 24 O -0.19 -2.76 10.78 5.37 0.06 -2.70 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.08 1.04 8.12 -51.93 -0.42 0.61 16 34 H 0.10 1.32 7.98 -51.93 -0.41 0.91 16 35 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 1.08 3.35 -51.92 -0.17 0.91 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.37 8.01 -51.93 -0.42 0.95 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -31.40 336.97 -7.74 -39.14 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.23 Total: -1.53 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.07 Total: -13.22 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.44 Total: -44.82 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: 0.06 Total: -2.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.40 -7.74 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.113 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds