Wall clock time and date at job start Tue Mar 31 2020 00:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46943 * 2 1 4 4 C 1.50703 * 109.47267 * 119.99545 * 2 1 3 5 5 C 1.34333 * 126.44067 * 119.99906 * 4 2 1 6 6 N 1.34470 * 107.67141 * 179.97438 * 5 4 2 7 7 C 1.30265 * 108.69849 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.61790 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47358 * 90.02348 * 8 7 6 10 10 C 1.46844 * 110.99734 * 293.94784 * 9 8 7 11 11 C 1.53044 * 109.52351 * 174.16205 * 10 9 8 12 12 C 1.53114 * 109.27620 * 59.18200 * 11 10 9 13 13 C 1.53122 * 109.15993 * 302.34480 * 12 11 10 14 14 H 1.09000 * 109.50351 * 297.67604 * 13 12 11 15 15 C 1.50708 * 109.50127 * 177.59814 * 13 12 11 16 16 H 1.07991 * 119.99789 * 240.00607 * 15 13 12 17 17 C 1.37877 * 120.00008 * 59.99918 * 15 13 12 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.46847 * 110.99870 * 169.74413 * 9 8 7 24 24 O 1.33970 * 108.75937 * 0.22558 * 7 6 5 25 25 H 1.08998 * 109.46773 * 299.99778 * 1 2 3 26 26 H 1.08999 * 109.47205 * 59.99804 * 1 2 3 27 27 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47513 * 240.00155 * 2 1 3 29 29 H 1.09000 * 109.46917 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46750 * 299.99656 * 3 2 1 31 31 H 1.08998 * 109.47205 * 60.00486 * 3 2 1 32 32 H 1.08007 * 126.16451 * 359.94884 * 5 4 2 33 33 H 1.09006 * 109.47385 * 330.02045 * 8 7 6 34 34 H 1.09003 * 109.47091 * 210.01993 * 8 7 6 35 35 H 1.09006 * 109.45970 * 54.15049 * 10 9 8 36 36 H 1.08998 * 109.46780 * 294.17822 * 10 9 8 37 37 H 1.09005 * 109.50098 * 299.23981 * 11 10 9 38 38 H 1.08999 * 109.53764 * 179.14860 * 11 10 9 39 39 H 1.09008 * 109.52033 * 182.44299 * 12 11 10 40 40 H 1.08993 * 109.57636 * 62.28390 * 12 11 10 41 41 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.46702 * 65.82562 * 23 9 8 43 43 H 1.09003 * 109.46567 * 305.85129 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8078 -1.8069 1.2582 6 7 3.0288 -2.1182 2.5476 7 6 2.4140 -1.2491 3.2983 8 6 2.4075 -1.2399 4.8052 9 7 3.5358 -0.4366 5.2949 10 6 4.8175 -1.0675 4.9550 11 6 5.9664 -0.1365 5.3495 12 6 5.8967 0.1430 6.8533 13 6 4.5337 0.7551 7.1881 14 1 4.4248 1.7072 6.6688 15 6 4.4342 0.9789 8.6752 16 1 3.6570 0.4904 9.2439 17 6 5.3357 1.8072 9.3095 18 7 5.2492 2.0021 10.6072 19 14 6.6797 2.6526 8.3255 20 1 7.8842 1.7848 8.2853 21 1 7.0234 3.9469 8.9673 22 1 6.2002 2.8982 6.9417 23 6 3.4264 -0.2018 6.7403 24 8 1.7839 -0.3680 2.5099 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1854 -2.3423 0.3995 33 1 2.5008 -2.2610 5.1752 34 1 1.4724 -0.8081 5.1619 35 1 4.8558 -1.2570 3.8822 36 1 4.9126 -2.0102 5.4938 37 1 5.8797 0.8012 4.8006 38 1 6.9183 -0.6109 5.1112 39 1 6.6872 0.8402 7.1312 40 1 6.0228 -0.7890 7.4043 41 1 5.8832 2.5852 11.0533 42 1 3.5281 -1.1485 7.2709 43 1 2.4543 0.2374 6.9644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852320006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:24 Heat of formation + Delta-G solvation = -7.071817 kcal Electronic energy + Delta-G solvation = -22096.930851 eV Core-core repulsion = 18949.413036 eV Total energy + Delta-G solvation = -3147.517815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.33217 -40.03784 -36.75250 -35.90698 -35.52803 -34.06404 -32.05260 -30.87941 -28.08875 -27.81798 -26.86700 -24.41280 -23.72151 -23.14311 -22.41279 -21.20769 -20.54847 -18.86974 -17.88442 -17.82813 -17.02188 -16.44013 -16.03256 -15.92075 -15.48641 -15.32515 -15.29155 -14.82388 -14.41847 -14.25306 -14.08889 -13.87419 -13.78199 -13.10280 -13.04424 -12.89673 -12.77275 -12.54494 -12.40786 -12.21111 -12.18056 -11.97257 -11.91474 -11.79072 -11.47430 -11.44373 -11.03331 -10.86429 -10.62641 -9.70134 -9.34067 -8.29704 -6.32714 0.43993 1.30119 1.36530 1.47165 1.61821 1.72649 2.33036 2.88221 3.06294 3.18976 3.63088 3.90179 3.94912 4.02368 4.09602 4.12477 4.15512 4.31111 4.38329 4.43471 4.46698 4.60167 4.71537 4.73824 4.76022 4.77767 4.84578 4.90598 4.91791 4.98262 5.01636 5.10442 5.16127 5.18306 5.29795 5.33405 5.36669 5.41420 5.60863 5.70228 6.03495 6.05852 6.32590 6.74274 6.76604 7.33021 8.86892 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.003960 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.915135 B = 7068.450872 C = 7228.830778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.006 4.006 3 C -0.149 4.149 4 C -0.041 4.041 5 C -0.057 4.057 6 N -0.499 5.499 7 C 0.192 3.808 8 C 0.148 3.852 9 N -0.547 5.547 10 C 0.066 3.934 11 C -0.112 4.112 12 C -0.121 4.121 13 C 0.020 3.980 14 H 0.024 0.976 15 C -0.516 4.516 16 H 0.039 0.961 17 C 0.016 3.984 18 N -0.949 5.949 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.300 1.300 22 H -0.252 1.252 23 C 0.090 3.910 24 O -0.204 6.204 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.130 0.870 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.208 0.792 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.265 0.735 42 H 0.031 0.969 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 -5.902 -24.712 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 C -0.206 4.206 4 C -0.095 4.095 5 C -0.195 4.195 6 N -0.229 5.229 7 C -0.015 4.015 8 C 0.020 3.980 9 N -0.273 5.273 10 C -0.062 4.062 11 C -0.150 4.150 12 C -0.159 4.159 13 C 0.001 3.999 14 H 0.042 0.958 15 C -0.554 4.554 16 H 0.058 0.942 17 C -0.181 4.181 18 N -0.589 5.589 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.227 1.227 22 H -0.176 1.176 23 C -0.037 4.037 24 O -0.090 6.090 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.148 0.852 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.225 0.775 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.256 -5.833 -24.534 25.983 hybrid contribution 0.390 0.282 0.665 0.820 sum -5.866 -5.552 -23.870 25.199 Atomic orbital electron populations 1.21869 0.92876 1.02605 1.03036 1.19979 0.96987 0.95925 0.89559 1.21879 1.01230 0.94534 1.02954 1.24176 1.02334 0.98859 0.84098 1.23541 1.02723 0.98244 0.95022 1.70429 1.22049 1.27093 1.03346 1.26136 0.93621 0.85851 0.95854 1.20410 0.96852 0.99157 0.81603 1.61863 1.02019 1.47535 1.15849 1.22036 0.88391 0.95179 1.00579 1.21606 0.98131 0.99753 0.95527 1.21929 0.98328 1.00016 0.95614 1.19077 0.92234 0.94996 0.93617 0.95830 1.21293 1.14064 1.27325 0.92754 0.94227 1.25777 0.99996 0.96882 0.95492 1.70033 1.38830 1.39562 1.10477 0.85858 0.79899 0.77079 0.79661 1.19349 1.22745 1.17594 1.21848 0.99713 0.98049 0.84105 1.84389 1.58744 1.48626 1.17269 0.93692 0.89249 0.92159 0.85198 0.92782 0.89117 0.93896 0.77549 0.89574 0.86774 0.90482 0.94439 0.92441 0.90092 0.94672 0.92742 0.92569 0.95066 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.18 71.98 0.66 -1.16 16 2 C -0.01 -0.08 3.33 -11.54 -0.04 -0.12 16 3 C -0.15 -2.16 9.18 71.98 0.66 -1.49 16 4 C -0.04 -0.91 5.89 24.79 0.15 -0.76 16 5 C -0.06 -1.29 11.78 83.40 0.98 -0.31 16 6 N -0.50 -14.23 10.39 -303.82 -3.16 -17.38 16 7 C 0.19 5.57 6.99 88.34 0.62 6.18 16 8 C 0.15 4.16 5.59 85.56 0.48 4.64 16 9 N -0.55 -18.58 4.65 -900.90 -4.19 -22.77 16 10 C 0.07 2.15 5.31 86.33 0.46 2.61 16 11 C -0.11 -3.90 6.09 30.65 0.19 -3.71 16 12 C -0.12 -5.14 4.73 30.67 0.15 -5.00 16 13 C 0.02 0.93 1.85 -11.48 -0.02 0.91 16 14 H 0.02 1.16 7.21 -2.39 -0.02 1.14 16 15 C -0.52 -29.28 9.15 25.60 0.23 -29.05 16 16 H 0.04 2.45 7.99 -2.92 -0.02 2.42 16 17 C 0.02 0.92 5.45 84.65 0.46 1.38 16 18 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 19 Si 0.95 45.97 24.35 68.60 1.67 47.64 16 20 H -0.27 -12.35 6.89 99.48 0.69 -11.66 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.25 -11.61 6.53 99.48 0.65 -10.96 16 23 C 0.09 3.51 4.68 86.33 0.40 3.91 16 24 O -0.20 -5.76 10.78 -3.69 -0.04 -5.80 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.13 1.06 8.11 -2.39 -0.02 1.04 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.21 3.17 8.06 -2.91 -0.02 3.14 16 33 H 0.09 2.24 8.12 -2.38 -0.02 2.22 16 34 H 0.11 2.86 7.98 -2.39 -0.02 2.84 16 35 H 0.08 2.46 6.43 -2.38 -0.02 2.44 16 36 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.04 1.56 3.35 -2.38 -0.01 1.56 16 40 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 2.78 8.01 -2.39 -0.02 2.76 16 Total: -1.00 -68.69 336.97 0.86 -67.83 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.89 Total: 11.67 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 5.38 Total: -21.96 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -7.04 Total: -99.38 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.04 Total: -5.80 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.67 Total: 47.64 kcal Total: -68.69 0.86 -67.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.758 kcal (2) G-P(sol) polarization free energy of solvation -68.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds