Wall clock time and date at job start Tue Mar 31 2020 00:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47448 * 323.96805 * 3 2 1 5 5 C 1.52994 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47298 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47298 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47050 * 179.97438 * 7 6 5 9 9 C 1.46900 * 110.99990 * 169.99570 * 8 7 6 10 10 C 1.53241 * 109.33977 * 187.25390 * 9 8 7 11 11 N 1.47074 * 108.51879 * 306.17136 * 10 9 8 12 12 C 1.34784 * 120.88239 * 231.18421 * 11 10 9 13 13 O 1.21691 * 119.99743 * 355.17259 * 12 11 10 14 14 C 1.46372 * 120.00278 * 175.17093 * 12 11 10 15 15 H 1.08007 * 119.99803 * 13.25059 * 14 12 11 16 16 C 1.40041 * 120.00304 * 193.24972 * 14 12 11 17 17 N 1.30671 * 120.00456 * 188.99135 * 16 14 12 18 18 Si 1.86805 * 119.99799 * 8.99083 * 16 14 12 19 19 H 1.48502 * 109.46874 * 274.69864 * 18 16 14 20 20 H 1.48498 * 109.47069 * 34.70172 * 18 16 14 21 21 H 1.48501 * 109.47075 * 154.70105 * 18 16 14 22 22 C 1.47074 * 118.24054 * 51.46051 * 11 10 9 23 23 C 1.46894 * 111.00097 * 294.30174 * 8 7 6 24 24 H 4.44650 * 5.63208 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.46565 * 203.96985 * 3 2 1 26 26 H 1.09000 * 109.47185 * 83.97406 * 3 2 1 27 27 H 1.09005 * 109.47075 * 59.99960 * 4 3 2 28 28 H 1.09000 * 109.47418 * 300.00458 * 4 3 2 29 29 H 1.08996 * 109.47500 * 60.00056 * 5 4 3 30 30 H 1.09008 * 109.47069 * 299.99660 * 5 4 3 31 31 H 1.09000 * 109.46698 * 59.99357 * 6 5 4 32 32 H 1.08995 * 109.46718 * 300.00192 * 6 5 4 33 33 H 1.08996 * 109.47500 * 59.99606 * 7 6 5 34 34 H 1.08999 * 109.46822 * 299.99325 * 7 6 5 35 35 H 1.08998 * 109.48928 * 67.29460 * 9 8 7 36 36 H 1.08994 * 109.51779 * 307.23057 * 9 8 7 37 37 H 1.09006 * 109.62663 * 186.46318 * 10 9 8 38 38 H 1.09003 * 109.62690 * 65.88283 * 10 9 8 39 39 H 0.96994 * 120.00332 * 180.02562 * 17 16 14 40 40 H 1.09005 * 109.62963 * 68.24497 * 22 11 10 41 41 H 1.08996 * 109.63328 * 188.82837 * 22 11 10 42 42 H 1.09004 * 109.49207 * 292.70423 * 23 8 7 43 43 H 1.08997 * 109.49271 * 52.78318 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.1656 0.8485 5 6 4.6866 -1.1645 0.8490 6 6 5.1972 -2.3312 1.6970 7 6 6.7272 -2.3297 1.6980 8 7 7.2174 -3.4495 2.5127 9 6 8.6665 -3.6255 2.3481 10 6 9.1069 -4.9058 3.0658 11 7 8.6424 -4.8433 4.4598 12 6 9.4921 -5.0635 5.4827 13 8 10.6387 -5.4041 5.2586 14 6 9.0357 -4.8930 6.8629 15 1 7.9806 -4.8029 7.0756 16 6 9.9670 -4.8469 7.9078 17 7 9.5585 -4.8718 9.1488 18 14 11.7933 -4.7495 7.5274 19 1 12.3273 -6.1181 7.3105 20 1 12.0011 -3.9370 6.3019 21 1 12.5033 -4.1161 8.6676 22 6 7.2248 -4.5402 4.7080 23 6 6.8596 -3.2686 3.9259 24 1 -1.0497 -0.0004 0.0000 25 1 3.0089 0.9399 0.4175 26 1 3.0094 -0.1071 -1.0220 27 1 2.7937 -2.1049 0.4310 28 1 2.7932 -1.0579 1.8705 29 1 5.0491 -0.2253 1.2667 30 1 5.0503 -1.2721 -0.1730 31 1 4.8346 -3.2702 1.2789 32 1 4.8334 -2.2240 2.7188 33 1 7.0894 -1.3906 2.1163 34 1 7.0912 -2.4367 0.6762 35 1 9.1878 -2.7700 2.7776 36 1 8.9058 -3.7023 1.2875 37 1 10.1942 -4.9816 3.0451 38 1 8.6672 -5.7723 2.5717 39 1 10.2035 -4.8395 9.8724 40 1 6.6076 -5.3722 4.3688 41 1 7.0669 -4.3742 5.7737 42 1 7.4062 -2.4181 4.3334 43 1 5.7882 -3.0867 4.0094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878673326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:58 Heat of formation + Delta-G solvation = -1.643188 kcal Electronic energy + Delta-G solvation = -21151.947262 eV Core-core repulsion = 18004.664850 eV Total energy + Delta-G solvation = -3147.282412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.13630 -37.41511 -36.39754 -34.35348 -32.95218 -32.83697 -30.93719 -30.24041 -27.62821 -26.44189 -24.74438 -23.26389 -22.00981 -21.13298 -20.62114 -18.83370 -18.32034 -16.81450 -16.19378 -16.06360 -15.23450 -14.95618 -14.70468 -14.54539 -14.41830 -14.27402 -13.84904 -13.67919 -13.47786 -12.63199 -12.48017 -12.26132 -12.09722 -11.96111 -11.74247 -11.48992 -11.29608 -11.25901 -11.03600 -10.84541 -10.72511 -10.68385 -10.44834 -10.38818 -10.36222 -10.20928 -9.42218 -9.02526 -8.23110 -7.88809 -7.47398 -6.62191 -4.83499 2.51724 2.54821 3.45116 3.49290 3.73081 3.90381 4.08759 4.18759 4.30953 4.58067 4.65781 4.73701 4.83796 4.99369 5.18780 5.24328 5.33650 5.37289 5.44630 5.46006 5.49993 5.59258 5.67576 5.69943 5.72872 5.76844 5.81211 5.85332 5.92075 6.00110 6.09402 6.20435 6.24596 6.35141 6.41934 6.58967 7.05159 7.23156 7.27129 7.32573 7.64067 7.88827 8.31923 8.72756 9.15306 10.04600 10.38606 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032461 B = 0.002861 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.368919 B = 9783.249927 C =10293.663512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.185 4.185 3 C -0.015 4.015 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.117 4.117 7 C 0.055 3.945 8 N -0.538 5.538 9 C 0.045 3.955 10 C 0.124 3.876 11 N -0.634 5.634 12 C 0.554 3.446 13 O -0.618 6.618 14 C -0.533 4.533 15 H 0.091 0.909 16 C 0.101 3.899 17 N -0.828 5.828 18 Si 0.967 3.033 19 H -0.278 1.278 20 H -0.266 1.266 21 H -0.322 1.322 22 C 0.125 3.875 23 C 0.039 3.961 24 H 0.216 0.784 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.282 0.718 40 H 0.054 0.946 41 H 0.100 0.900 42 H 0.037 0.963 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.941 9.143 -16.442 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.185 4.185 3 C -0.052 4.052 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.073 4.073 8 N -0.263 5.263 9 C -0.084 4.084 10 C 0.000 4.000 11 N -0.369 5.369 12 C 0.363 3.637 13 O -0.510 6.510 14 C -0.569 4.569 15 H 0.108 0.892 16 C -0.116 4.116 17 N -0.458 5.458 18 Si 0.800 3.200 19 H -0.204 1.204 20 H -0.191 1.191 21 H -0.254 1.254 22 C 0.001 3.999 23 C -0.089 4.089 24 H 0.232 0.768 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.055 0.945 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.600 8.527 -16.512 22.453 hybrid contribution 0.705 0.838 0.174 1.109 sum -11.894 9.366 -16.339 22.274 Atomic orbital electron populations 1.24916 0.96021 1.01127 1.01282 1.23249 0.94713 1.00284 1.00234 1.18806 0.84540 1.00206 1.01630 1.21542 0.95635 0.97736 1.00215 1.21566 0.94514 0.98996 1.00550 1.21602 0.94799 0.98614 1.00420 1.22097 0.95308 0.92074 0.97785 1.61968 1.13940 1.41719 1.08690 1.22491 0.87280 0.98556 1.00060 1.21300 1.00393 0.95316 0.82987 1.47741 1.09159 1.75246 1.04744 1.18336 0.83384 0.76381 0.85559 1.90192 1.20446 1.56081 1.84283 1.20772 0.96348 1.51793 0.87988 0.89165 1.25761 1.02891 0.89151 0.93837 1.69558 1.38025 1.38280 0.99954 0.85220 0.79983 0.79622 0.75170 1.20438 1.19105 1.25394 1.21685 0.82603 0.94750 1.00856 1.22682 1.00401 0.98440 0.87409 0.76753 0.89596 0.89605 0.91458 0.91486 0.91877 0.91763 0.91052 0.91693 0.95212 0.91148 0.94760 0.90690 0.89536 0.92816 0.90817 0.92802 0.88158 0.94484 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.75 19.25 29.55 0.57 -1.19 16 2 C -0.18 -1.65 13.34 -37.12 -0.50 -2.14 16 3 C -0.02 -0.11 5.70 -29.52 -0.17 -0.27 16 4 C -0.11 -0.83 5.17 -26.74 -0.14 -0.97 16 5 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 6 C -0.12 -1.10 5.15 -26.73 -0.14 -1.23 16 7 C 0.06 0.62 4.96 -3.83 -0.02 0.60 16 8 N -0.54 -7.68 4.63 -234.03 -1.08 -8.77 16 9 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 10 C 0.12 2.33 6.58 -3.60 -0.02 2.31 16 11 N -0.63 -14.02 3.00 -173.84 -0.52 -14.54 16 12 C 0.55 14.95 7.32 -12.99 -0.10 14.86 16 13 O -0.62 -18.12 11.82 5.20 0.06 -18.06 16 14 C -0.53 -15.06 9.35 -35.64 -0.33 -15.39 16 15 H 0.09 2.51 6.02 -52.48 -0.32 2.19 16 16 C 0.10 2.91 5.52 -17.37 -0.10 2.81 16 17 N -0.83 -23.57 13.92 55.55 0.77 -22.80 16 18 Si 0.97 25.74 25.88 -169.99 -4.40 21.34 16 19 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 20 H -0.27 -7.40 6.62 56.52 0.37 -7.03 16 21 H -0.32 -8.10 7.11 56.52 0.40 -7.70 16 22 C 0.13 2.32 6.54 -3.37 -0.02 2.30 16 23 C 0.04 0.60 5.48 -3.47 -0.02 0.58 16 24 H 0.22 1.03 7.80 -54.10 -0.42 0.61 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.65 6.40 -51.93 -0.33 0.31 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.07 0.72 7.97 -51.93 -0.41 0.31 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.97 7.99 -51.93 -0.41 0.55 16 37 H 0.09 1.76 7.09 -51.93 -0.37 1.39 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.28 7.38 8.29 -40.82 -0.34 7.05 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.99 5.41 -51.93 -0.28 1.71 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.03 6.16 -51.93 -0.32 0.71 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -32.58 346.10 -8.19 -40.78 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -7.10 Total: -5.09 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.14 Total: 1.92 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.83 Total: -46.10 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.06 Total: -18.06 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -4.40 Total: 21.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.58 -8.19 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878673326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.133 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds