Wall clock time and date at job start Tue Mar 31 2020 00:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47448 * 323.96805 * 3 2 1 5 5 C 1.52994 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47298 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47298 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47050 * 179.97438 * 7 6 5 9 9 C 1.46900 * 110.99990 * 169.99570 * 8 7 6 10 10 C 1.53241 * 109.33977 * 187.25390 * 9 8 7 11 11 N 1.47074 * 108.51879 * 306.17136 * 10 9 8 12 12 C 1.34784 * 120.88239 * 231.18421 * 11 10 9 13 13 O 1.21691 * 119.99743 * 355.17259 * 12 11 10 14 14 C 1.46372 * 120.00278 * 175.17093 * 12 11 10 15 15 H 1.08007 * 119.99803 * 13.25059 * 14 12 11 16 16 C 1.40041 * 120.00304 * 193.24972 * 14 12 11 17 17 N 1.30671 * 120.00456 * 188.99135 * 16 14 12 18 18 Si 1.86805 * 119.99799 * 8.99083 * 16 14 12 19 19 H 1.48502 * 109.46874 * 274.69864 * 18 16 14 20 20 H 1.48498 * 109.47069 * 34.70172 * 18 16 14 21 21 H 1.48501 * 109.47075 * 154.70105 * 18 16 14 22 22 C 1.47074 * 118.24054 * 51.46051 * 11 10 9 23 23 C 1.46894 * 111.00097 * 294.30174 * 8 7 6 24 24 H 4.44650 * 5.63208 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.46565 * 203.96985 * 3 2 1 26 26 H 1.09000 * 109.47185 * 83.97406 * 3 2 1 27 27 H 1.09005 * 109.47075 * 59.99960 * 4 3 2 28 28 H 1.09000 * 109.47418 * 300.00458 * 4 3 2 29 29 H 1.08996 * 109.47500 * 60.00056 * 5 4 3 30 30 H 1.09008 * 109.47069 * 299.99660 * 5 4 3 31 31 H 1.09000 * 109.46698 * 59.99357 * 6 5 4 32 32 H 1.08995 * 109.46718 * 300.00192 * 6 5 4 33 33 H 1.08996 * 109.47500 * 59.99606 * 7 6 5 34 34 H 1.08999 * 109.46822 * 299.99325 * 7 6 5 35 35 H 1.08998 * 109.48928 * 67.29460 * 9 8 7 36 36 H 1.08994 * 109.51779 * 307.23057 * 9 8 7 37 37 H 1.09006 * 109.62663 * 186.46318 * 10 9 8 38 38 H 1.09003 * 109.62690 * 65.88283 * 10 9 8 39 39 H 0.96994 * 120.00332 * 180.02562 * 17 16 14 40 40 H 1.09005 * 109.62963 * 68.24497 * 22 11 10 41 41 H 1.08996 * 109.63328 * 188.82837 * 22 11 10 42 42 H 1.09004 * 109.49207 * 292.70423 * 23 8 7 43 43 H 1.08997 * 109.49271 * 52.78318 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.1656 0.8485 5 6 4.6866 -1.1645 0.8490 6 6 5.1972 -2.3312 1.6970 7 6 6.7272 -2.3297 1.6980 8 7 7.2174 -3.4495 2.5127 9 6 8.6665 -3.6255 2.3481 10 6 9.1069 -4.9058 3.0658 11 7 8.6424 -4.8433 4.4598 12 6 9.4921 -5.0635 5.4827 13 8 10.6387 -5.4041 5.2586 14 6 9.0357 -4.8930 6.8629 15 1 7.9806 -4.8029 7.0756 16 6 9.9670 -4.8469 7.9078 17 7 9.5585 -4.8718 9.1488 18 14 11.7933 -4.7495 7.5274 19 1 12.3273 -6.1181 7.3105 20 1 12.0011 -3.9370 6.3019 21 1 12.5033 -4.1161 8.6676 22 6 7.2248 -4.5402 4.7080 23 6 6.8596 -3.2686 3.9259 24 1 -1.0497 -0.0004 0.0000 25 1 3.0089 0.9399 0.4175 26 1 3.0094 -0.1071 -1.0220 27 1 2.7937 -2.1049 0.4310 28 1 2.7932 -1.0579 1.8705 29 1 5.0491 -0.2253 1.2667 30 1 5.0503 -1.2721 -0.1730 31 1 4.8346 -3.2702 1.2789 32 1 4.8334 -2.2240 2.7188 33 1 7.0894 -1.3906 2.1163 34 1 7.0912 -2.4367 0.6762 35 1 9.1878 -2.7700 2.7776 36 1 8.9058 -3.7023 1.2875 37 1 10.1942 -4.9816 3.0451 38 1 8.6672 -5.7723 2.5717 39 1 10.2035 -4.8395 9.8724 40 1 6.6076 -5.3722 4.3688 41 1 7.0669 -4.3742 5.7737 42 1 7.4062 -2.4181 4.3334 43 1 5.7882 -3.0867 4.0094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878673326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:58 Heat of formation + Delta-G solvation = -22.324072 kcal Electronic energy + Delta-G solvation = -21152.844052 eV Core-core repulsion = 18004.664850 eV Total energy + Delta-G solvation = -3148.179202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69249 -38.93317 -37.26550 -35.60910 -35.02155 -33.92974 -32.25448 -31.17962 -29.22275 -27.94525 -25.85352 -24.66922 -23.06247 -22.21614 -21.66106 -20.54357 -18.86257 -18.72415 -18.06067 -16.99014 -16.79391 -16.08589 -16.02316 -16.01940 -15.61379 -15.47295 -14.97240 -14.86051 -14.55282 -14.31715 -13.97813 -13.92496 -13.47137 -13.14339 -13.03179 -12.81711 -12.58693 -12.47796 -12.33862 -12.19565 -11.99109 -11.97060 -11.65668 -11.42410 -11.24404 -11.23089 -10.97317 -10.95033 -10.00868 -9.53552 -9.14191 -8.81218 -7.02492 1.30099 1.34717 1.57910 1.90354 1.94041 2.06294 2.31384 2.60987 2.95335 3.29326 3.53915 3.92747 3.97820 4.07615 4.10898 4.21962 4.26386 4.33631 4.41883 4.42765 4.62909 4.64809 4.68373 4.74226 4.80135 4.80514 4.91187 4.94158 4.97696 5.05146 5.11817 5.14352 5.18558 5.25028 5.31421 5.48831 5.54911 5.66167 5.93517 6.07649 6.12201 6.24375 6.61083 6.73682 7.12206 7.95453 8.24160 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032461 B = 0.002861 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.368919 B = 9783.249927 C =10293.663512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.216 4.216 3 C -0.016 4.016 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.111 4.111 7 C 0.056 3.944 8 N -0.539 5.539 9 C 0.055 3.945 10 C 0.120 3.880 11 N -0.636 5.636 12 C 0.548 3.452 13 O -0.647 6.647 14 C -0.552 4.552 15 H 0.086 0.914 16 C 0.070 3.930 17 N -0.847 5.847 18 Si 1.011 2.989 19 H -0.292 1.292 20 H -0.288 1.288 21 H -0.297 1.297 22 C 0.121 3.879 23 C 0.050 3.950 24 H 0.239 0.761 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.087 0.913 35 H 0.018 0.982 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.292 0.708 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.020 0.980 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 10.023 -18.223 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.216 4.216 3 C -0.052 4.052 4 C -0.146 4.146 5 C -0.148 4.148 6 C -0.149 4.149 7 C -0.071 4.071 8 N -0.264 5.264 9 C -0.074 4.074 10 C -0.003 4.003 11 N -0.369 5.369 12 C 0.356 3.644 13 O -0.542 6.542 14 C -0.588 4.588 15 H 0.104 0.896 16 C -0.146 4.146 17 N -0.478 5.478 18 Si 0.844 3.156 19 H -0.219 1.219 20 H -0.215 1.215 21 H -0.227 1.227 22 C -0.002 4.002 23 C -0.079 4.079 24 H 0.256 0.744 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.037 0.963 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.039 0.961 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.664 9.430 -18.300 24.709 hybrid contribution 0.920 0.543 0.652 1.252 sum -12.744 9.973 -17.648 23.944 Atomic orbital electron populations 1.25694 0.97056 1.00460 1.00670 1.23888 0.95824 1.00994 1.00916 1.18877 0.83692 1.00347 1.02287 1.21462 0.95624 0.97744 0.99758 1.21492 0.94281 0.98241 1.00817 1.21551 0.93443 0.99403 1.00487 1.22203 0.96345 0.90686 0.97867 1.61985 1.12977 1.43408 1.08047 1.22386 0.87946 0.95825 1.01270 1.21498 0.99408 0.98009 0.81428 1.47755 1.10063 1.73764 1.05297 1.18298 0.83515 0.76213 0.86361 1.90161 1.21765 1.57297 1.84971 1.20999 0.96374 1.52321 0.89077 0.89576 1.26233 1.04907 0.89384 0.94066 1.69552 1.39070 1.38856 1.00305 0.84608 0.77946 0.78345 0.74715 1.21926 1.21549 1.22699 1.21832 0.80744 0.96996 1.00606 1.22544 1.01785 0.95742 0.87801 0.74443 0.88800 0.88437 0.91908 0.92366 0.91443 0.90568 0.91299 0.92348 0.95332 0.89459 0.96329 0.87348 0.91566 0.91301 0.89750 0.91314 0.89999 0.96141 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.29 19.25 74.32 1.43 -1.86 16 2 C -0.22 -3.57 13.34 31.13 0.42 -3.15 16 3 C -0.02 -0.19 5.70 28.79 0.16 -0.02 16 4 C -0.11 -1.37 5.17 30.59 0.16 -1.21 16 5 C -0.11 -1.31 5.21 30.59 0.16 -1.15 16 6 C -0.11 -1.77 5.15 30.59 0.16 -1.61 16 7 C 0.06 1.08 4.96 86.30 0.43 1.51 16 8 N -0.54 -13.99 4.63 -894.35 -4.14 -18.13 16 9 C 0.05 1.56 5.62 86.38 0.49 2.05 16 10 C 0.12 4.38 6.58 86.35 0.57 4.95 16 11 N -0.64 -28.02 3.00 -822.13 -2.47 -30.48 16 12 C 0.55 30.02 7.32 86.36 0.63 30.65 16 13 O -0.65 -38.58 11.82 -4.32 -0.05 -38.63 16 14 C -0.55 -31.67 9.35 24.83 0.23 -31.44 16 15 H 0.09 4.90 6.02 -2.91 -0.02 4.88 16 16 C 0.07 4.04 5.52 85.30 0.47 4.51 16 17 N -0.85 -48.22 13.92 21.83 0.30 -47.92 16 18 Si 1.01 53.47 25.88 68.60 1.78 55.24 16 19 H -0.29 -15.97 7.11 99.48 0.71 -15.26 16 20 H -0.29 -16.23 6.62 99.48 0.66 -15.57 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 C 0.12 4.41 6.54 86.50 0.57 4.98 16 23 C 0.05 1.45 5.48 86.54 0.47 1.93 16 24 H 0.24 1.86 7.80 -4.43 -0.03 1.82 16 25 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.01 6.40 -2.39 -0.02 0.99 16 33 H 0.03 0.58 8.12 -2.39 -0.02 0.56 16 34 H 0.09 1.43 7.97 -2.39 -0.02 1.41 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.11 2.42 7.99 -2.39 -0.02 2.40 16 37 H 0.07 2.69 7.09 -2.38 -0.02 2.67 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.29 15.17 8.29 -92.71 -0.77 14.40 16 40 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.08 3.28 5.41 -2.39 -0.01 3.27 16 42 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.11 2.53 6.16 -2.39 -0.01 2.51 16 Total: -1.00 -70.02 346.10 2.68 -67.34 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 0.92 Total: 2.44 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.34 Total: 10.13 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -6.30 Total: -96.53 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.05 Total: -38.63 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 1.78 Total: 55.24 kcal Total: -70.02 2.68 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878673326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.018 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds