Wall clock time and date at job start Tue Mar 31 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47113 * 119.99995 * 2 1 4 4 C 1.32875 * 119.99995 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00107 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47391 * 125.00018 * 5 4 3 7 7 N 1.46498 * 109.46995 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99672 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00248 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99816 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00157 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.67057 * 328.23914 * 11 10 8 13 13 C 1.54891 * 110.91324 * 91.57823 * 11 10 8 14 14 C 1.54267 * 104.19324 * 156.33331 * 13 11 10 15 15 C 1.53876 * 106.59870 * 336.39035 * 14 13 11 16 16 H 1.08998 * 110.02768 * 119.28860 * 15 14 13 17 17 C 1.50701 * 110.03013 * 240.71414 * 15 14 13 18 18 H 1.07996 * 119.99396 * 118.55095 * 17 15 14 19 19 C 1.37870 * 120.00390 * 298.54810 * 17 15 14 20 20 N 1.31515 * 119.99974 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 120.00260 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47403 * 59.99644 * 21 19 17 23 23 H 1.48507 * 109.47487 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46854 * 299.99764 * 21 19 17 25 25 C 1.54261 * 106.59990 * 0.02562 * 15 14 13 26 26 H 1.07994 * 119.99696 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00029 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99766 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.99976 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.99766 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47290 * 4.99691 * 5 4 3 32 32 H 1.08999 * 109.46783 * 244.99925 * 5 4 3 33 33 H 1.08996 * 109.47304 * 59.99613 * 6 5 4 34 34 H 1.09000 * 109.46577 * 299.99880 * 6 5 4 35 35 H 0.96998 * 120.00635 * 359.97438 * 7 6 5 36 36 H 0.97005 * 120.00091 * 0.02562 * 10 8 7 37 37 H 1.09004 * 110.48613 * 37.65703 * 13 11 10 38 38 H 1.08994 * 110.48745 * 275.01121 * 13 11 10 39 39 H 1.08995 * 110.03032 * 217.10762 * 14 13 11 40 40 H 1.08998 * 110.03405 * 95.67701 * 14 13 11 41 41 H 0.97003 * 120.00313 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.48928 * 142.28640 * 25 15 14 43 43 H 1.08999 * 110.48469 * 264.93049 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3931 1.2740 0.0005 5 6 4.1466 2.5791 0.0011 6 6 5.1177 2.6068 1.1831 7 7 5.8497 3.8758 1.1839 8 6 6.7656 4.1247 2.1408 9 8 6.9840 3.2963 3.0036 10 7 7.4395 5.2920 2.1413 11 6 8.4347 5.5628 3.1818 12 1 8.1544 5.0793 4.1176 13 6 9.8447 5.1081 2.7299 14 6 10.8080 5.9647 3.5773 15 6 10.0267 7.2233 3.9934 16 1 9.9607 7.2794 5.0800 17 6 10.7062 8.4550 3.4527 18 1 10.1846 9.0995 2.7607 19 6 11.9936 8.7589 3.8414 20 7 12.6285 7.9743 4.6845 21 14 12.8356 10.2860 3.1717 22 1 12.0527 11.4895 3.5509 23 1 14.2042 10.3859 3.7393 24 1 12.9194 10.1961 1.6917 25 6 8.6157 7.0874 3.3850 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8687 -0.9354 0.0004 29 1 1.5243 2.2093 0.0004 30 1 3.9330 0.3387 0.0014 31 1 3.4416 3.4057 0.0905 32 1 4.7047 2.6767 -0.9301 33 1 5.8226 1.7803 1.0937 34 1 4.5594 2.5092 2.1142 35 1 5.6753 4.5369 0.4959 36 1 7.2650 5.9530 1.4532 37 1 9.9885 5.3094 1.6683 38 1 9.9899 4.0487 2.9413 39 1 11.6786 6.2447 2.9842 40 1 11.1211 5.4100 4.4619 41 1 13.5344 8.1879 4.9577 42 1 7.8643 7.4726 4.0742 43 1 8.5607 7.6082 2.4291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883673439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:49 Heat of formation + Delta-G solvation = -21.135596 kcal Electronic energy + Delta-G solvation = -20488.469392 eV Core-core repulsion = 17340.341726 eV Total energy + Delta-G solvation = -3148.127666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82639 -37.42755 -36.65578 -34.88554 -33.67505 -32.54789 -31.73269 -28.72077 -28.05200 -26.70243 -24.01531 -23.30482 -21.11280 -20.70398 -19.99697 -19.90723 -19.00870 -17.96403 -16.54329 -16.06569 -15.88697 -15.18326 -14.88801 -14.68438 -14.52087 -14.05165 -13.96886 -13.91645 -12.71173 -12.58123 -12.42617 -12.40601 -12.29262 -11.74870 -11.55572 -11.37570 -11.21091 -11.09484 -10.88522 -10.75301 -10.53621 -10.35583 -9.95395 -9.85426 -9.61588 -9.24440 -9.09775 -8.70571 -8.67816 -8.43109 -8.30521 -5.98363 -4.02132 0.97896 2.68643 2.93989 3.32227 3.37641 3.39240 3.46153 4.30605 4.44675 4.49428 4.64640 4.72286 4.84707 5.00534 5.13746 5.30185 5.32639 5.41676 5.58156 5.65305 5.72999 5.80316 5.91651 5.95283 6.15240 6.28557 6.39985 6.42837 6.49894 6.52107 6.55363 6.68750 6.77806 6.96316 7.03227 7.09922 7.37563 7.40145 7.74907 7.94616 8.01316 8.25295 8.47955 8.85386 9.00729 9.61404 11.10674 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.056353 B = 0.002268 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.752484 B =12341.412813 C =12552.236942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.128 4.128 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.104 4.104 6 C 0.144 3.856 7 N -0.754 5.754 8 C 0.701 3.299 9 O -0.594 6.594 10 N -0.733 5.733 11 C 0.152 3.848 12 H 0.087 0.913 13 C -0.133 4.133 14 C -0.090 4.090 15 C 0.047 3.953 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.118 4.118 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.392 0.608 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.260 0.740 42 H 0.049 0.951 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.308 -11.359 -11.244 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.146 4.146 3 C -0.155 4.155 4 C -0.152 4.152 5 C -0.141 4.141 6 C 0.019 3.981 7 N -0.411 5.411 8 C 0.400 3.600 9 O -0.472 6.472 10 N -0.386 5.386 11 C 0.047 3.953 12 H 0.105 0.895 13 C -0.172 4.172 14 C -0.129 4.129 15 C 0.028 3.972 16 H 0.047 0.953 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.141 4.141 20 N -0.526 5.526 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.156 4.156 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.227 0.773 36 H 0.226 0.774 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.910 -12.151 -10.307 24.728 hybrid contribution 0.398 1.402 -1.051 1.796 sum -18.512 -10.749 -11.358 24.233 Atomic orbital electron populations 1.24368 0.95660 1.01999 0.99948 1.22007 0.95493 0.96740 1.00360 1.21961 0.94651 0.96864 1.02023 1.23239 0.94886 0.98305 0.98788 1.20905 0.98270 0.96120 0.98841 1.21045 0.93466 0.85563 0.97978 1.45127 1.43487 1.20718 1.31767 1.16024 0.79076 0.82906 0.81947 1.90910 1.69876 1.47019 1.39397 1.45356 1.42811 1.17552 1.32893 1.22095 0.86390 0.97282 0.89496 0.89461 1.22795 0.95245 0.99110 1.00045 1.22015 0.97711 0.95583 0.97564 1.19199 0.88196 0.93765 0.96016 0.95292 1.21180 0.98792 1.08220 1.26988 0.92783 1.24984 0.97512 0.96519 0.95100 1.69977 1.12394 1.37385 1.32810 0.86715 0.78641 0.83743 0.79185 1.20364 1.21373 1.20386 1.22750 1.00274 0.91872 1.00716 0.88146 0.88372 0.86953 0.86857 0.86648 0.90754 0.90036 0.91593 0.91632 0.77287 0.77434 0.92675 0.93240 0.91626 0.94154 0.93014 0.93189 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 14.43 28.88 0.42 -0.67 16 2 C -0.13 -0.86 9.83 -37.83 -0.37 -1.23 16 3 C -0.14 -0.96 9.44 -37.83 -0.36 -1.32 16 4 C -0.13 -0.93 9.22 -36.16 -0.33 -1.26 16 5 C -0.10 -0.70 5.78 -27.88 -0.16 -0.86 16 6 C 0.14 1.43 5.66 -4.04 -0.02 1.41 16 7 N -0.75 -8.40 5.56 -65.23 -0.36 -8.76 16 8 C 0.70 11.14 8.57 -86.92 -0.74 10.40 16 9 O -0.59 -12.08 15.99 5.28 0.08 -11.99 16 10 N -0.73 -11.17 5.19 -56.74 -0.29 -11.47 16 11 C 0.15 2.83 3.26 -65.95 -0.21 2.61 16 12 H 0.09 1.78 7.55 -51.93 -0.39 1.39 16 13 C -0.13 -2.67 6.52 -25.07 -0.16 -2.83 16 14 C -0.09 -2.13 5.56 -25.61 -0.14 -2.27 16 15 C 0.05 1.16 2.84 -90.65 -0.26 0.90 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.51 -13.80 8.34 -34.44 -0.29 -14.08 16 18 H 0.05 1.42 7.55 -52.49 -0.40 1.02 16 19 C 0.06 1.67 5.07 -17.82 -0.09 1.58 16 20 N -0.89 -25.45 12.33 55.43 0.68 -24.77 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.12 -2.34 5.97 -25.09 -0.15 -2.49 16 26 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 27 H 0.10 0.52 8.05 -52.49 -0.42 0.10 16 28 H 0.11 0.66 8.06 -52.48 -0.42 0.24 16 29 H 0.11 0.72 7.87 -52.49 -0.41 0.31 16 30 H 0.12 0.74 8.05 -52.48 -0.42 0.32 16 31 H 0.07 0.45 7.82 -51.93 -0.41 0.05 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.39 3.15 8.49 -40.82 -0.35 2.81 16 36 H 0.39 4.82 8.58 -40.82 -0.35 4.47 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.70 7.17 -51.93 -0.37 1.33 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.16 7.56 -51.93 -0.39 0.77 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -31.65 358.66 -9.66 -41.31 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.28 Total: 4.34 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.88 Total: -10.12 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.03 Total: -45.00 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.65 -9.66 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.179 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds