Wall clock time and date at job start Tue Mar 31 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47113 * 119.99995 * 2 1 4 4 C 1.32875 * 119.99995 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00107 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47391 * 125.00018 * 5 4 3 7 7 N 1.46498 * 109.46995 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99672 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00248 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99816 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00157 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.67057 * 328.23914 * 11 10 8 13 13 C 1.54891 * 110.91324 * 91.57823 * 11 10 8 14 14 C 1.54267 * 104.19324 * 156.33331 * 13 11 10 15 15 C 1.53876 * 106.59870 * 336.39035 * 14 13 11 16 16 H 1.08998 * 110.02768 * 119.28860 * 15 14 13 17 17 C 1.50701 * 110.03013 * 240.71414 * 15 14 13 18 18 H 1.07996 * 119.99396 * 118.55095 * 17 15 14 19 19 C 1.37870 * 120.00390 * 298.54810 * 17 15 14 20 20 N 1.31515 * 119.99974 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 120.00260 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47403 * 59.99644 * 21 19 17 23 23 H 1.48507 * 109.47487 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46854 * 299.99764 * 21 19 17 25 25 C 1.54261 * 106.59990 * 0.02562 * 15 14 13 26 26 H 1.07994 * 119.99696 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00029 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99766 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.99976 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.99766 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47290 * 4.99691 * 5 4 3 32 32 H 1.08999 * 109.46783 * 244.99925 * 5 4 3 33 33 H 1.08996 * 109.47304 * 59.99613 * 6 5 4 34 34 H 1.09000 * 109.46577 * 299.99880 * 6 5 4 35 35 H 0.96998 * 120.00635 * 359.97438 * 7 6 5 36 36 H 0.97005 * 120.00091 * 0.02562 * 10 8 7 37 37 H 1.09004 * 110.48613 * 37.65703 * 13 11 10 38 38 H 1.08994 * 110.48745 * 275.01121 * 13 11 10 39 39 H 1.08995 * 110.03032 * 217.10762 * 14 13 11 40 40 H 1.08998 * 110.03405 * 95.67701 * 14 13 11 41 41 H 0.97003 * 120.00313 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.48928 * 142.28640 * 25 15 14 43 43 H 1.08999 * 110.48469 * 264.93049 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3931 1.2740 0.0005 5 6 4.1466 2.5791 0.0011 6 6 5.1177 2.6068 1.1831 7 7 5.8497 3.8758 1.1839 8 6 6.7656 4.1247 2.1408 9 8 6.9840 3.2963 3.0036 10 7 7.4395 5.2920 2.1413 11 6 8.4347 5.5628 3.1818 12 1 8.1544 5.0793 4.1176 13 6 9.8447 5.1081 2.7299 14 6 10.8080 5.9647 3.5773 15 6 10.0267 7.2233 3.9934 16 1 9.9607 7.2794 5.0800 17 6 10.7062 8.4550 3.4527 18 1 10.1846 9.0995 2.7607 19 6 11.9936 8.7589 3.8414 20 7 12.6285 7.9743 4.6845 21 14 12.8356 10.2860 3.1717 22 1 12.0527 11.4895 3.5509 23 1 14.2042 10.3859 3.7393 24 1 12.9194 10.1961 1.6917 25 6 8.6157 7.0874 3.3850 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8687 -0.9354 0.0004 29 1 1.5243 2.2093 0.0004 30 1 3.9330 0.3387 0.0014 31 1 3.4416 3.4057 0.0905 32 1 4.7047 2.6767 -0.9301 33 1 5.8226 1.7803 1.0937 34 1 4.5594 2.5092 2.1142 35 1 5.6753 4.5369 0.4959 36 1 7.2650 5.9530 1.4532 37 1 9.9885 5.3094 1.6683 38 1 9.9899 4.0487 2.9413 39 1 11.6786 6.2447 2.9842 40 1 11.1211 5.4100 4.4619 41 1 13.5344 8.1879 4.9577 42 1 7.8643 7.4726 4.0742 43 1 8.5607 7.6082 2.4291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883673439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:49 Heat of formation + Delta-G solvation = -40.603830 kcal Electronic energy + Delta-G solvation = -20489.313598 eV Core-core repulsion = 17340.341726 eV Total energy + Delta-G solvation = -3148.971872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10682 -38.94715 -37.43617 -35.74428 -35.30795 -33.89935 -32.93158 -29.96472 -29.52090 -28.22557 -25.77513 -24.26727 -22.18567 -21.50913 -21.39599 -20.84582 -20.48851 -19.18402 -18.33858 -17.29638 -16.82173 -16.54611 -16.29705 -16.05059 -15.76883 -15.25905 -14.98349 -14.87082 -14.34662 -14.11231 -13.60216 -13.27049 -13.11410 -12.98103 -12.91300 -12.69799 -12.45963 -12.35986 -12.18646 -12.14067 -11.88683 -11.71852 -11.67127 -11.52177 -11.28996 -11.07926 -10.70768 -10.43857 -10.28148 -9.67068 -9.20070 -8.07839 -6.18326 0.48560 1.44980 1.46060 1.53420 1.75889 2.19471 2.24355 2.46750 3.23004 3.35709 3.87861 3.95585 4.05264 4.08353 4.15713 4.24200 4.24945 4.48620 4.59539 4.70527 4.74931 4.82854 4.87648 4.92862 4.98584 5.02081 5.07124 5.11429 5.17305 5.39862 5.46055 5.46838 5.53263 5.67533 5.67871 5.71071 5.80762 5.94855 5.97153 6.02874 6.11149 6.41480 6.93807 7.18433 7.49162 7.64786 9.00879 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.056353 B = 0.002268 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.752484 B =12341.412813 C =12552.236942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C -0.140 4.140 4 C -0.143 4.143 5 C -0.090 4.090 6 C 0.144 3.856 7 N -0.733 5.733 8 C 0.697 3.303 9 O -0.641 6.641 10 N -0.721 5.721 11 C 0.167 3.833 12 H 0.069 0.931 13 C -0.121 4.121 14 C -0.081 4.081 15 C 0.036 3.964 16 H -0.006 1.006 17 C -0.526 4.526 18 H 0.062 0.938 19 C 0.007 3.993 20 N -0.922 5.922 21 Si 0.955 3.045 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.269 1.269 25 C -0.103 4.103 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.413 0.587 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.019 0.981 41 H 0.259 0.741 42 H 0.060 0.940 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.068 -10.653 -13.506 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.166 4.166 3 C -0.158 4.158 4 C -0.162 4.162 5 C -0.127 4.127 6 C 0.019 3.981 7 N -0.390 5.390 8 C 0.397 3.603 9 O -0.523 6.523 10 N -0.376 5.376 11 C 0.062 3.938 12 H 0.087 0.913 13 C -0.160 4.160 14 C -0.120 4.120 15 C 0.017 3.983 16 H 0.013 0.987 17 C -0.564 4.564 18 H 0.080 0.920 19 C -0.191 4.191 20 N -0.561 5.561 21 Si 0.780 3.220 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.194 1.194 25 C -0.141 4.141 26 H 0.130 0.870 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.250 0.750 36 H 0.248 0.752 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.722 -11.418 -12.638 26.824 hybrid contribution 0.881 1.130 -0.323 1.469 sum -19.841 -10.288 -12.962 25.836 Atomic orbital electron populations 1.24574 0.95530 1.02869 0.98529 1.22154 0.96000 0.96946 1.01517 1.22112 0.94802 0.97306 1.01557 1.23279 0.94990 0.98492 0.99402 1.20798 0.97679 0.96474 0.97755 1.21119 0.93512 0.84501 0.98923 1.44949 1.41780 1.21498 1.30753 1.16201 0.79567 0.82341 0.82194 1.90888 1.71398 1.48502 1.41510 1.44986 1.41959 1.18079 1.32559 1.21621 0.86389 0.96057 0.89776 0.91281 1.22658 0.95142 0.98193 1.00007 1.21805 0.97531 0.95813 0.96865 1.19213 0.91239 0.93578 0.94234 0.98747 1.21577 0.99093 1.08893 1.26806 0.92018 1.25808 0.98415 0.99487 0.95432 1.70125 1.12570 1.39207 1.34226 0.85665 0.77297 0.80164 0.78828 1.19546 1.21600 1.19375 1.22537 0.97399 0.92870 1.01279 0.87049 0.87823 0.86634 0.86189 0.86601 0.89517 0.88637 0.92728 0.93101 0.74999 0.75242 0.91262 0.93378 0.94323 0.96229 0.93260 0.92139 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 14.43 66.64 0.96 -0.87 16 2 C -0.15 -1.81 9.83 23.43 0.23 -1.58 16 3 C -0.14 -1.74 9.44 23.43 0.22 -1.52 16 4 C -0.14 -1.76 9.22 24.51 0.23 -1.53 16 5 C -0.09 -0.99 5.78 29.85 0.17 -0.81 16 6 C 0.14 2.64 5.66 86.38 0.49 3.13 16 7 N -0.73 -14.58 5.56 -478.53 -2.66 -17.24 16 8 C 0.70 21.03 8.57 179.05 1.53 22.57 16 9 O -0.64 -25.86 15.99 -4.00 -0.06 -25.93 16 10 N -0.72 -20.36 5.19 -451.67 -2.34 -22.70 16 11 C 0.17 6.08 3.26 46.27 0.15 6.23 16 12 H 0.07 2.81 7.55 -2.38 -0.02 2.80 16 13 C -0.12 -4.80 6.52 31.67 0.21 -4.59 16 14 C -0.08 -3.95 5.56 31.32 0.17 -3.77 16 15 C 0.04 1.81 2.84 -10.82 -0.03 1.78 16 16 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 17 C -0.53 -28.19 8.34 25.60 0.21 -27.97 16 18 H 0.06 3.15 7.55 -2.91 -0.02 3.12 16 19 C 0.01 0.39 5.07 84.65 0.43 0.82 16 20 N -0.92 -54.18 12.33 21.44 0.26 -53.92 16 21 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C -0.10 -3.95 5.97 31.66 0.19 -3.76 16 26 H 0.11 0.86 8.06 -2.91 -0.02 0.83 16 27 H 0.10 0.92 8.05 -2.91 -0.02 0.90 16 28 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 29 H 0.12 1.28 7.87 -2.91 -0.02 1.25 16 30 H 0.12 1.38 8.05 -2.91 -0.02 1.35 16 31 H 0.09 0.77 7.82 -2.38 -0.02 0.76 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.41 5.15 8.49 -92.71 -0.79 4.36 16 36 H 0.41 8.66 8.58 -92.70 -0.80 7.87 16 37 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.04 2.05 7.17 -2.39 -0.02 2.03 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 2.71 7.56 -2.39 -0.02 2.69 16 Total: -1.00 -69.48 358.66 1.79 -67.69 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.60 Total: 18.85 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 5.17 Total: -11.88 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -4.74 Total: -93.86 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.06 Total: -25.93 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.48 1.79 -67.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.085 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds