Wall clock time and date at job start Tue Mar 31 2020 00:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47118 * 119.99771 * 2 1 4 4 C 1.32872 * 119.99552 * 185.31959 * 3 2 1 5 5 C 1.50703 * 120.00311 * 6.24466 * 4 3 2 6 6 C 1.52995 * 109.47153 * 126.12661 * 5 4 3 7 7 N 1.46494 * 109.47168 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00180 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00188 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99989 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99930 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.67324 * 328.23453 * 11 10 8 13 13 C 1.54892 * 110.91270 * 91.58011 * 11 10 8 14 14 C 1.54269 * 104.19663 * 156.33021 * 13 11 10 15 15 C 1.53880 * 106.59515 * 336.39006 * 14 13 11 16 16 H 1.08998 * 110.03238 * 119.28594 * 15 14 13 17 17 C 1.50700 * 110.03113 * 240.71276 * 15 14 13 18 18 H 1.07996 * 119.99920 * 118.54961 * 17 15 14 19 19 C 1.37872 * 120.00225 * 298.54729 * 17 15 14 20 20 N 1.31519 * 120.00008 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00307 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47093 * 59.99806 * 21 19 17 23 23 H 1.48502 * 109.47177 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46863 * 299.99878 * 21 19 17 25 25 C 1.54259 * 106.59902 * 0.02562 * 15 14 13 26 26 H 1.08001 * 119.99699 * 180.02562 * 1 2 3 27 27 H 1.07992 * 120.00029 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99832 * 180.02562 * 2 1 3 29 29 H 1.07996 * 120.00304 * 5.31802 * 3 2 1 30 30 H 1.08005 * 119.99658 * 186.23717 * 4 3 2 31 31 H 1.09001 * 109.46966 * 6.12136 * 5 4 3 32 32 H 1.08998 * 109.46768 * 246.12543 * 5 4 3 33 33 H 1.09001 * 109.47614 * 59.99871 * 6 5 4 34 34 H 1.09008 * 109.47235 * 299.99807 * 6 5 4 35 35 H 0.97001 * 119.99998 * 359.97438 * 7 6 5 36 36 H 0.97001 * 120.00189 * 359.97438 * 10 8 7 37 37 H 1.09006 * 110.48709 * 37.65251 * 13 11 10 38 38 H 1.08996 * 110.48984 * 275.00575 * 13 11 10 39 39 H 1.08995 * 110.03269 * 217.10627 * 14 13 11 40 40 H 1.09001 * 110.03611 * 95.66966 * 14 13 11 41 41 H 0.96999 * 119.99806 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.48735 * 142.29029 * 25 15 14 43 43 H 1.09001 * 110.48836 * 264.92980 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3887 1.2765 -0.1067 5 6 4.1260 -0.0114 -0.3687 6 6 5.0214 0.1544 -1.5981 7 7 5.7376 -1.0978 -1.8532 8 6 6.5894 -1.1870 -2.8938 9 8 6.7631 -0.2284 -3.6212 10 7 7.2488 -2.3390 -3.1281 11 6 8.1742 -2.4361 -4.2595 12 1 7.8417 -1.8053 -5.0839 13 6 9.6147 -2.0631 -3.8292 14 6 10.5138 -2.7697 -4.8646 15 6 9.6940 -3.9422 -5.4312 16 1 9.5598 -3.8192 -6.5058 17 6 10.3918 -5.2466 -5.1436 18 1 9.9071 -5.9956 -4.5350 19 6 11.6491 -5.4838 -5.6573 20 7 12.2396 -4.5715 -6.3981 21 14 12.5138 -7.1009 -5.3014 22 1 11.6953 -8.2250 -5.8226 23 1 13.8432 -7.1074 -5.9631 24 1 12.6905 -7.2554 -3.8350 25 6 8.3252 -3.9067 -4.7208 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8687 -0.9353 -0.0004 29 1 1.5278 2.2074 0.0867 30 1 3.9369 2.2017 -0.0058 31 1 3.4075 -0.8114 -0.5476 32 1 4.7398 -0.2612 0.4968 33 1 5.7398 0.9544 -1.4192 34 1 4.4075 0.4042 -2.4636 35 1 5.5988 -1.8627 -1.2731 36 1 7.1105 -3.1037 -2.5476 37 1 9.8219 -2.4362 -2.8262 38 1 9.7584 -0.9835 -3.8729 39 1 11.4163 -3.1441 -4.3816 40 1 10.7775 -2.0777 -5.6644 41 1 13.1243 -4.7382 -6.7592 42 1 7.5281 -4.1729 -5.4150 43 1 8.3237 -4.5774 -3.8616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883673440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:52 Heat of formation + Delta-G solvation = -15.625179 kcal Electronic energy + Delta-G solvation = -20683.879124 eV Core-core repulsion = 17535.990408 eV Total energy + Delta-G solvation = -3147.888717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82928 -37.52752 -36.86166 -34.73468 -33.66697 -32.31557 -31.66629 -28.81266 -28.05371 -26.70280 -23.95625 -23.16578 -22.13894 -20.88100 -19.91892 -19.14735 -18.74219 -17.80679 -16.59213 -16.25168 -15.88148 -15.12321 -15.05950 -14.75700 -14.58063 -14.10492 -13.93155 -13.79588 -12.78610 -12.58569 -12.44129 -12.40196 -12.27092 -11.86004 -11.63902 -11.13623 -11.09954 -10.94082 -10.88280 -10.74655 -10.53616 -10.35488 -9.95159 -9.85048 -9.61533 -9.24346 -9.09103 -8.69883 -8.67785 -8.42905 -8.30407 -5.98369 -4.02104 0.98683 2.67814 2.95765 3.32240 3.37631 3.39229 3.46531 4.33152 4.44481 4.49033 4.68149 4.71687 4.82567 4.95165 5.24429 5.32159 5.32611 5.41572 5.58356 5.66475 5.73239 5.81258 5.91779 6.01315 6.12466 6.29707 6.40130 6.42987 6.49800 6.54107 6.55828 6.68862 6.77909 6.96441 7.03445 7.10165 7.37710 7.40221 7.74948 7.94678 8.01380 8.25592 8.47984 8.85727 9.00782 9.61395 11.10681 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040553 B = 0.002478 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.286254 B =11297.379008 C =11650.169692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.134 4.134 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.112 4.112 6 C 0.146 3.854 7 N -0.754 5.754 8 C 0.701 3.299 9 O -0.594 6.594 10 N -0.733 5.733 11 C 0.152 3.848 12 H 0.087 0.913 13 C -0.133 4.133 14 C -0.090 4.090 15 C 0.047 3.953 16 H 0.029 0.971 17 C -0.513 4.513 18 H 0.054 0.946 19 C 0.060 3.940 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.118 4.118 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.392 0.608 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.260 0.740 42 H 0.049 0.951 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.501 8.182 14.015 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.150 4.150 6 C 0.021 3.979 7 N -0.411 5.411 8 C 0.401 3.599 9 O -0.472 6.472 10 N -0.386 5.386 11 C 0.047 3.953 12 H 0.105 0.895 13 C -0.172 4.172 14 C -0.129 4.129 15 C 0.028 3.972 16 H 0.047 0.953 17 C -0.551 4.551 18 H 0.072 0.928 19 C -0.142 4.142 20 N -0.526 5.526 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.156 4.156 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.227 0.773 36 H 0.226 0.774 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.153 9.119 13.199 24.226 hybrid contribution 0.448 -1.541 0.782 1.785 sum -17.705 7.578 13.980 23.798 Atomic orbital electron populations 1.24391 0.95716 1.01975 0.99679 1.22126 0.95438 0.97114 1.00491 1.21911 0.94645 0.96806 1.02210 1.23226 0.94951 0.98462 0.98623 1.21028 0.98881 0.96923 0.98127 1.21019 0.94126 0.85961 0.96797 1.45122 1.47834 1.15918 1.32187 1.16022 0.78897 0.83903 0.81121 1.90908 1.69163 1.37333 1.49793 1.45354 1.46829 1.12909 1.33530 1.22090 0.87812 0.98639 0.86714 0.89459 1.22796 0.95079 0.99293 1.00027 1.22017 0.98341 0.96657 0.95868 1.19197 0.88522 0.94282 0.95153 0.95304 1.21177 1.01176 1.00965 1.31812 0.92787 1.24991 0.97520 0.96502 0.95147 1.69979 1.14960 1.33672 1.33974 0.86713 0.78809 0.84361 0.78393 1.20357 1.21380 1.20377 1.22751 1.00235 0.92647 0.99996 0.88144 0.88438 0.86484 0.86644 0.86408 0.90186 0.90237 0.91639 0.91661 0.77322 0.77445 0.92676 0.93241 0.91622 0.94153 0.93012 0.93187 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 14.43 28.88 0.42 -0.69 16 2 C -0.13 -0.92 9.21 -37.83 -0.35 -1.27 16 3 C -0.14 -0.96 9.83 -37.83 -0.37 -1.33 16 4 C -0.13 -0.93 9.59 -36.16 -0.35 -1.28 16 5 C -0.11 -0.78 5.55 -27.88 -0.15 -0.94 16 6 C 0.15 1.47 5.66 -4.05 -0.02 1.44 16 7 N -0.75 -8.45 5.56 -65.23 -0.36 -8.81 16 8 C 0.70 11.17 8.57 -86.91 -0.74 10.43 16 9 O -0.59 -12.10 15.99 5.29 0.08 -12.01 16 10 N -0.73 -11.20 5.19 -56.74 -0.29 -11.50 16 11 C 0.15 2.84 3.26 -65.95 -0.21 2.62 16 12 H 0.09 1.78 7.55 -51.93 -0.39 1.39 16 13 C -0.13 -2.67 6.52 -25.07 -0.16 -2.83 16 14 C -0.09 -2.13 5.56 -25.61 -0.14 -2.27 16 15 C 0.05 1.16 2.84 -90.65 -0.26 0.91 16 16 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.51 -13.79 8.34 -34.44 -0.29 -14.07 16 18 H 0.05 1.42 7.55 -52.49 -0.40 1.02 16 19 C 0.06 1.65 5.07 -17.82 -0.09 1.56 16 20 N -0.89 -25.49 12.33 55.43 0.68 -24.81 16 21 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.12 -2.35 5.97 -25.09 -0.15 -2.50 16 26 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 27 H 0.10 0.53 8.05 -52.49 -0.42 0.10 16 28 H 0.12 0.73 5.99 -52.48 -0.31 0.42 16 29 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 30 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 31 H 0.08 0.51 5.41 -51.93 -0.28 0.23 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.39 3.18 8.49 -40.82 -0.35 2.84 16 36 H 0.39 4.84 8.58 -40.82 -0.35 4.49 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.70 7.17 -51.93 -0.37 1.33 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.16 7.56 -51.93 -0.39 0.77 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -31.70 354.29 -9.50 -41.20 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.05 Total: 4.75 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.88 Total: -10.22 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.03 Total: -45.12 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.70 -9.50 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.577 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds