Wall clock time and date at job start Tue Mar 31 2020 00:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47118 * 119.99771 * 2 1 4 4 C 1.32872 * 119.99552 * 185.31959 * 3 2 1 5 5 C 1.50703 * 120.00311 * 6.24466 * 4 3 2 6 6 C 1.52995 * 109.47153 * 126.12661 * 5 4 3 7 7 N 1.46494 * 109.47168 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00180 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00188 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99989 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99930 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.67324 * 328.23453 * 11 10 8 13 13 C 1.54892 * 110.91270 * 91.58011 * 11 10 8 14 14 C 1.54269 * 104.19663 * 156.33021 * 13 11 10 15 15 C 1.53880 * 106.59515 * 336.39006 * 14 13 11 16 16 H 1.08998 * 110.03238 * 119.28594 * 15 14 13 17 17 C 1.50700 * 110.03113 * 240.71276 * 15 14 13 18 18 H 1.07996 * 119.99920 * 118.54961 * 17 15 14 19 19 C 1.37872 * 120.00225 * 298.54729 * 17 15 14 20 20 N 1.31519 * 120.00008 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00307 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47093 * 59.99806 * 21 19 17 23 23 H 1.48502 * 109.47177 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46863 * 299.99878 * 21 19 17 25 25 C 1.54259 * 106.59902 * 0.02562 * 15 14 13 26 26 H 1.08001 * 119.99699 * 180.02562 * 1 2 3 27 27 H 1.07992 * 120.00029 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99832 * 180.02562 * 2 1 3 29 29 H 1.07996 * 120.00304 * 5.31802 * 3 2 1 30 30 H 1.08005 * 119.99658 * 186.23717 * 4 3 2 31 31 H 1.09001 * 109.46966 * 6.12136 * 5 4 3 32 32 H 1.08998 * 109.46768 * 246.12543 * 5 4 3 33 33 H 1.09001 * 109.47614 * 59.99871 * 6 5 4 34 34 H 1.09008 * 109.47235 * 299.99807 * 6 5 4 35 35 H 0.97001 * 119.99998 * 359.97438 * 7 6 5 36 36 H 0.97001 * 120.00189 * 359.97438 * 10 8 7 37 37 H 1.09006 * 110.48709 * 37.65251 * 13 11 10 38 38 H 1.08996 * 110.48984 * 275.00575 * 13 11 10 39 39 H 1.08995 * 110.03269 * 217.10627 * 14 13 11 40 40 H 1.09001 * 110.03611 * 95.66966 * 14 13 11 41 41 H 0.96999 * 119.99806 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.48735 * 142.29029 * 25 15 14 43 43 H 1.09001 * 110.48836 * 264.92980 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3887 1.2765 -0.1067 5 6 4.1260 -0.0114 -0.3687 6 6 5.0214 0.1544 -1.5981 7 7 5.7376 -1.0978 -1.8532 8 6 6.5894 -1.1870 -2.8938 9 8 6.7631 -0.2284 -3.6212 10 7 7.2488 -2.3390 -3.1281 11 6 8.1742 -2.4361 -4.2595 12 1 7.8417 -1.8053 -5.0839 13 6 9.6147 -2.0631 -3.8292 14 6 10.5138 -2.7697 -4.8646 15 6 9.6940 -3.9422 -5.4312 16 1 9.5598 -3.8192 -6.5058 17 6 10.3918 -5.2466 -5.1436 18 1 9.9071 -5.9956 -4.5350 19 6 11.6491 -5.4838 -5.6573 20 7 12.2396 -4.5715 -6.3981 21 14 12.5138 -7.1009 -5.3014 22 1 11.6953 -8.2250 -5.8226 23 1 13.8432 -7.1074 -5.9631 24 1 12.6905 -7.2554 -3.8350 25 6 8.3252 -3.9067 -4.7208 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8687 -0.9353 -0.0004 29 1 1.5278 2.2074 0.0867 30 1 3.9369 2.2017 -0.0058 31 1 3.4075 -0.8114 -0.5476 32 1 4.7398 -0.2612 0.4968 33 1 5.7398 0.9544 -1.4192 34 1 4.4075 0.4042 -2.4636 35 1 5.5988 -1.8627 -1.2731 36 1 7.1105 -3.1037 -2.5476 37 1 9.8219 -2.4362 -2.8262 38 1 9.7584 -0.9835 -3.8729 39 1 11.4163 -3.1441 -4.3816 40 1 10.7775 -2.0777 -5.6644 41 1 13.1243 -4.7382 -6.7592 42 1 7.5281 -4.1729 -5.4150 43 1 8.3237 -4.5774 -3.8616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883673440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:51 Heat of formation + Delta-G solvation = -35.268711 kcal Electronic energy + Delta-G solvation = -20684.730932 eV Core-core repulsion = 17535.990408 eV Total energy + Delta-G solvation = -3148.740524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11177 -38.96314 -37.71304 -35.66606 -35.30902 -33.83723 -32.64908 -29.97891 -29.59188 -28.25212 -25.77011 -24.11063 -22.65406 -22.08806 -21.47261 -20.89005 -19.67884 -18.75812 -18.34238 -17.32755 -16.96188 -16.55963 -16.29908 -16.10403 -15.81155 -15.30076 -15.25598 -14.71888 -14.34852 -14.10701 -13.60394 -13.27061 -13.08178 -12.98204 -12.96750 -12.70698 -12.51076 -12.37756 -12.33227 -12.17241 -11.67658 -11.64058 -11.52331 -11.46776 -11.27153 -11.08036 -10.70910 -10.43974 -10.27994 -9.67164 -9.19507 -8.08011 -6.18449 0.49097 1.44840 1.46000 1.53339 1.75455 2.19333 2.24857 2.46613 3.22773 3.36251 3.88681 3.95525 4.05134 4.07726 4.20482 4.21049 4.24245 4.40977 4.63599 4.71117 4.78187 4.82861 4.87534 4.91722 5.01039 5.02631 5.07009 5.11475 5.17170 5.39738 5.46004 5.50844 5.53290 5.64743 5.67674 5.70964 5.82641 5.94762 5.97063 6.04357 6.10842 6.41342 6.93728 7.18062 7.48980 7.64563 9.00736 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040553 B = 0.002478 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.286254 B =11297.379008 C =11650.169692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.100 4.100 6 C 0.146 3.854 7 N -0.733 5.733 8 C 0.697 3.303 9 O -0.641 6.641 10 N -0.722 5.722 11 C 0.168 3.832 12 H 0.069 0.931 13 C -0.121 4.121 14 C -0.081 4.081 15 C 0.037 3.963 16 H -0.006 1.006 17 C -0.525 4.525 18 H 0.062 0.938 19 C 0.006 3.994 20 N -0.922 5.922 21 Si 0.955 3.045 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.268 1.268 25 C -0.103 4.103 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.413 0.587 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.019 0.981 41 H 0.259 0.741 42 H 0.060 0.940 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.065 7.092 16.222 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C -0.159 4.159 4 C -0.163 4.163 5 C -0.137 4.137 6 C 0.022 3.978 7 N -0.390 5.390 8 C 0.397 3.603 9 O -0.523 6.523 10 N -0.376 5.376 11 C 0.062 3.938 12 H 0.087 0.913 13 C -0.160 4.160 14 C -0.120 4.120 15 C 0.018 3.982 16 H 0.012 0.988 17 C -0.563 4.563 18 H 0.080 0.920 19 C -0.192 4.192 20 N -0.562 5.562 21 Si 0.781 3.219 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.193 1.193 25 C -0.141 4.141 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.249 0.751 36 H 0.247 0.753 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.766 7.991 15.472 26.343 hybrid contribution 0.869 -1.159 0.083 1.451 sum -18.897 6.833 15.555 25.411 Atomic orbital electron populations 1.24593 0.95687 1.02781 0.98479 1.22271 0.95877 0.97327 1.01461 1.22082 0.94788 0.97301 1.01755 1.23295 0.95083 0.98706 0.99198 1.20925 0.98519 0.97329 0.96894 1.21085 0.93964 0.85081 0.97715 1.44945 1.46149 1.17086 1.30782 1.16195 0.79282 0.83192 0.81610 1.90886 1.70716 1.38956 1.51703 1.44986 1.46069 1.13668 1.32870 1.21618 0.87581 0.97298 0.87337 0.91273 1.22659 0.95184 0.98746 0.99405 1.21808 0.97931 0.96293 0.96003 1.19207 0.91339 0.93925 0.93743 0.98772 1.21572 1.01425 1.01822 1.31450 0.92020 1.25823 0.98495 0.99842 0.95084 1.70127 1.15192 1.35665 1.35188 0.85660 0.77421 0.80302 0.78551 1.19523 1.21620 1.19350 1.22540 0.97602 0.93708 1.00272 0.87178 0.87924 0.85918 0.85979 0.85919 0.89288 0.88876 0.92655 0.93175 0.75057 0.75262 0.91263 0.93372 0.94315 0.96225 0.93255 0.92135 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 14.43 66.64 0.96 -0.90 16 2 C -0.15 -1.81 9.21 23.43 0.22 -1.59 16 3 C -0.14 -1.74 9.83 23.43 0.23 -1.51 16 4 C -0.14 -1.76 9.59 24.51 0.24 -1.53 16 5 C -0.10 -1.16 5.55 29.85 0.17 -0.99 16 6 C 0.15 2.72 5.66 86.38 0.49 3.21 16 7 N -0.73 -14.74 5.56 -478.54 -2.66 -17.40 16 8 C 0.70 21.11 8.57 179.05 1.53 22.64 16 9 O -0.64 -25.88 15.99 -3.99 -0.06 -25.94 16 10 N -0.72 -20.43 5.19 -451.69 -2.34 -22.77 16 11 C 0.17 6.09 3.26 46.27 0.15 6.24 16 12 H 0.07 2.82 7.55 -2.39 -0.02 2.80 16 13 C -0.12 -4.80 6.52 31.67 0.21 -4.59 16 14 C -0.08 -3.96 5.56 31.32 0.17 -3.78 16 15 C 0.04 1.84 2.84 -10.82 -0.03 1.81 16 16 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 17 C -0.52 -28.13 8.34 25.60 0.21 -27.92 16 18 H 0.06 3.14 7.55 -2.91 -0.02 3.12 16 19 C 0.01 0.33 5.07 84.65 0.43 0.76 16 20 N -0.92 -54.28 12.33 21.45 0.26 -54.01 16 21 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 C -0.10 -3.97 5.97 31.66 0.19 -3.78 16 26 H 0.11 0.90 8.06 -2.91 -0.02 0.87 16 27 H 0.10 0.93 8.05 -2.91 -0.02 0.90 16 28 H 0.12 1.25 5.99 -2.91 -0.02 1.24 16 29 H 0.12 1.28 8.06 -2.91 -0.02 1.25 16 30 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.09 0.90 5.41 -2.39 -0.01 0.89 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.41 5.26 8.49 -92.71 -0.79 4.48 16 36 H 0.41 8.71 8.58 -92.71 -0.80 7.92 16 37 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.04 2.05 7.17 -2.39 -0.02 2.03 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 43 H 0.08 2.72 7.56 -2.39 -0.02 2.70 16 Total: -1.00 -69.46 354.29 1.80 -67.66 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.59 Total: 19.22 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 5.16 Total: -11.92 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -4.74 Total: -94.18 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.06 Total: -25.94 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -69.46 1.80 -67.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.392 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds