Wall clock time and date at job start Tue Mar 31 2020 00:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32867 * 1 3 3 C 1.47119 * 119.99868 * 2 1 4 4 C 1.32875 * 119.99967 * 175.16082 * 3 2 1 5 5 C 1.50695 * 119.99723 * 5.88179 * 4 3 2 6 6 C 1.53005 * 109.47124 * 126.02687 * 5 4 3 7 7 N 1.46505 * 109.46889 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99739 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99761 * 355.02863 * 8 7 6 10 10 N 1.34771 * 120.00076 * 175.02493 * 8 7 6 11 11 C 1.46928 * 120.63259 * 184.89338 * 10 8 7 12 12 C 1.52759 * 109.01303 * 233.58656 * 11 10 8 13 13 C 1.53039 * 109.38198 * 305.58872 * 12 11 10 14 14 C 1.50701 * 109.44668 * 181.24868 * 13 12 11 15 15 H 1.08002 * 120.00286 * 245.22743 * 14 13 12 16 16 C 1.37877 * 119.99862 * 65.22993 * 14 13 12 17 17 N 1.31521 * 119.99931 * 5.28702 * 16 14 13 18 18 Si 1.86796 * 120.00180 * 185.28984 * 16 14 13 19 19 H 1.48498 * 109.47345 * 94.99536 * 18 16 14 20 20 H 1.48500 * 109.47132 * 214.99546 * 18 16 14 21 21 H 1.48500 * 109.47109 * 334.99472 * 18 16 14 22 22 C 1.53041 * 109.53754 * 61.23928 * 13 12 11 23 23 C 1.46930 * 120.63085 * 5.18128 * 10 8 7 24 24 H 1.08002 * 120.00108 * 359.72563 * 1 2 3 25 25 H 1.07991 * 120.00267 * 179.72585 * 1 2 3 26 26 H 1.07992 * 120.00103 * 180.27426 * 2 1 3 27 27 H 1.07996 * 120.00462 * 355.16311 * 3 2 1 28 28 H 1.08000 * 120.00263 * 185.87590 * 4 3 2 29 29 H 1.09002 * 109.47009 * 246.01952 * 5 4 3 30 30 H 1.08995 * 109.47637 * 6.02147 * 5 4 3 31 31 H 1.09002 * 109.46577 * 299.99529 * 6 5 4 32 32 H 1.08994 * 109.47137 * 60.00022 * 6 5 4 33 33 H 0.96998 * 120.00217 * 359.97438 * 7 6 5 34 34 H 1.09005 * 109.58846 * 353.42582 * 11 10 8 35 35 H 1.09001 * 109.58345 * 113.84789 * 11 10 8 36 36 H 1.09000 * 109.56416 * 185.55042 * 12 11 10 37 37 H 1.08999 * 109.35382 * 65.50055 * 12 11 10 38 38 H 1.08990 * 109.46119 * 301.21963 * 13 12 11 39 39 H 0.96995 * 119.99771 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.49789 * 178.67724 * 22 13 12 41 41 H 1.09007 * 109.52303 * 58.59886 * 22 13 12 42 42 H 1.09000 * 109.58333 * 246.15404 * 23 10 8 43 43 H 1.08998 * 109.58609 * 6.43694 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 3.3894 1.2762 0.0971 5 6 4.1486 -0.0254 0.0736 6 6 5.2208 0.0292 -1.0165 7 7 5.9593 -1.2359 -1.0389 8 6 6.9582 -1.4175 -1.9253 9 8 7.1874 -0.5687 -2.7652 10 7 7.7030 -2.5398 -1.8807 11 6 8.8615 -2.7053 -2.7690 12 6 8.7191 -4.0205 -3.5328 13 6 8.5206 -5.1666 -2.5382 14 6 8.4106 -6.4688 -3.2887 15 1 7.4857 -7.0262 -3.2704 16 6 9.4907 -6.9486 -3.9987 17 7 10.6474 -6.3255 -3.9372 18 14 9.3114 -8.4836 -5.0480 19 1 9.0143 -8.0932 -6.4496 20 1 10.5761 -9.2609 -5.0081 21 1 8.2014 -9.3170 -4.5203 22 6 7.2392 -4.9311 -1.7353 23 6 7.3681 -3.6239 -0.9471 24 1 -0.5400 0.9353 0.0045 25 1 -0.5400 -0.9352 -0.0045 26 1 1.8686 -0.9352 -0.0045 27 1 1.5272 2.2077 -0.0789 28 1 3.9225 2.2106 0.1927 29 1 4.6228 -0.1869 1.0417 30 1 3.4599 -0.8441 -0.1348 31 1 4.7467 0.1907 -1.9846 32 1 5.9096 0.8478 -0.8081 33 1 5.7293 -1.9428 -0.4158 34 1 8.9015 -1.8763 -3.4757 35 1 9.7761 -2.7273 -2.1764 36 1 9.6193 -4.2006 -4.1205 37 1 7.8566 -3.9612 -4.1966 38 1 9.3719 -5.2096 -1.8591 39 1 11.4071 -6.6629 -4.4369 40 1 7.0859 -5.7594 -1.0436 41 1 6.3902 -4.8635 -2.4156 42 1 8.1584 -3.7223 -0.2029 43 1 6.4242 -3.3997 -0.4503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883827010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:22 Heat of formation + Delta-G solvation = -1.846348 kcal Electronic energy + Delta-G solvation = -21301.199088 eV Core-core repulsion = 18153.907867 eV Total energy + Delta-G solvation = -3147.291222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95063 -37.39985 -36.66794 -34.70575 -33.49676 -32.13239 -31.01163 -30.19917 -28.47257 -26.07105 -23.60240 -22.87927 -22.07234 -22.00459 -20.24240 -19.14880 -18.36551 -17.59672 -16.34924 -16.26908 -15.88233 -15.24830 -14.93363 -14.57696 -14.13650 -14.01680 -13.68185 -13.15314 -12.83191 -12.69918 -12.65032 -12.44341 -12.36625 -12.07882 -11.75308 -11.64342 -11.19877 -11.03912 -10.91674 -10.82721 -10.65805 -10.42980 -10.11681 -9.76212 -9.56724 -9.11570 -8.97282 -8.90374 -8.62662 -8.35498 -7.89020 -6.03006 -4.06692 1.06290 2.75953 3.06547 3.29556 3.37131 3.39430 3.57693 4.19284 4.42600 4.46409 4.74925 4.78759 4.89947 5.03813 5.29127 5.32938 5.36374 5.39860 5.48428 5.73907 5.76724 5.80543 5.91948 6.06125 6.08617 6.21366 6.24859 6.36778 6.42487 6.48617 6.60678 6.60974 6.67226 6.80955 6.98594 7.13021 7.21621 7.48980 7.70750 7.91787 7.99516 8.31666 8.40489 8.95906 8.97258 9.57728 11.05193 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.003109 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.130294 B = 9003.001291 C = 9651.556909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.134 4.134 3 C -0.138 4.138 4 C -0.133 4.133 5 C -0.113 4.113 6 C 0.145 3.855 7 N -0.754 5.754 8 C 0.705 3.295 9 O -0.601 6.601 10 N -0.618 5.618 11 C 0.127 3.873 12 C -0.119 4.119 13 C 0.049 3.951 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.124 4.124 23 C 0.113 3.887 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.394 0.606 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.033 0.967 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.899 11.819 10.467 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.152 4.152 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.150 4.150 6 C 0.020 3.980 7 N -0.413 5.413 8 C 0.406 3.594 9 O -0.480 6.480 10 N -0.355 5.355 11 C 0.005 3.995 12 C -0.158 4.158 13 C 0.030 3.970 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.162 4.162 23 C -0.010 4.010 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.512 12.433 9.787 20.807 hybrid contribution -0.200 -1.223 -0.308 1.277 sum -13.713 11.210 9.478 20.088 Atomic orbital electron populations 1.24373 0.95689 1.01930 0.99877 1.22158 0.95455 0.97203 1.00338 1.21902 0.94770 0.96845 1.02080 1.23220 0.94852 0.98321 0.98740 1.21043 0.97697 0.96848 0.99452 1.21011 0.92628 0.85680 0.98633 1.45282 1.37521 1.18569 1.39931 1.15854 0.79463 0.82593 0.81476 1.90866 1.72697 1.45129 1.39323 1.47424 1.30948 1.15929 1.41172 1.21645 0.85257 1.00207 0.92421 1.21881 1.02380 0.92368 0.99137 1.18629 0.91706 0.93378 0.93284 1.21167 0.98071 1.05573 1.30449 0.92779 1.24966 0.95198 0.96985 0.96751 1.69926 1.00749 1.40373 1.41732 0.86639 0.77476 0.83263 0.80971 1.20756 1.21288 1.19963 1.22012 1.01483 0.93848 0.98850 1.21717 0.98922 0.88457 0.91900 0.88497 0.88133 0.86381 0.86681 0.86451 0.90237 0.90129 0.91667 0.91844 0.76934 0.90522 0.92462 0.89288 0.94184 0.94883 0.92987 0.92062 0.92987 0.91880 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 14.43 28.88 0.42 -0.86 16 2 C -0.13 -1.07 9.31 -37.83 -0.35 -1.42 16 3 C -0.14 -1.08 9.83 -37.83 -0.37 -1.45 16 4 C -0.13 -1.04 9.59 -36.16 -0.35 -1.38 16 5 C -0.11 -0.93 5.57 -27.88 -0.16 -1.08 16 6 C 0.15 1.67 5.66 -4.04 -0.02 1.64 16 7 N -0.75 -10.19 5.47 -65.22 -0.36 -10.55 16 8 C 0.70 12.85 8.30 -86.92 -0.72 12.13 16 9 O -0.60 -13.11 15.77 5.28 0.08 -13.03 16 10 N -0.62 -11.31 2.98 -178.76 -0.53 -11.84 16 11 C 0.13 2.58 6.41 -3.93 -0.03 2.55 16 12 C -0.12 -2.75 5.19 -26.83 -0.14 -2.89 16 13 C 0.05 1.15 1.94 -91.73 -0.18 0.97 16 14 C -0.51 -13.72 8.49 -34.44 -0.29 -14.01 16 15 H 0.05 1.43 7.75 -52.49 -0.41 1.03 16 16 C 0.06 1.70 5.26 -17.82 -0.09 1.61 16 17 N -0.89 -24.98 11.94 55.43 0.66 -24.32 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 23 C 0.11 1.80 6.39 -3.71 -0.02 1.78 16 24 H 0.10 0.59 8.05 -52.49 -0.42 0.17 16 25 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 26 H 0.12 0.90 5.82 -52.49 -0.31 0.59 16 27 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 28 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.64 5.32 -51.93 -0.28 0.36 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.39 4.37 5.96 -40.82 -0.24 4.13 16 34 H 0.08 1.60 7.00 -51.93 -0.36 1.24 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 2.28 6.68 -51.93 -0.35 1.93 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.85 8.12 -51.93 -0.42 0.43 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -30.94 346.65 -9.25 -40.20 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.87 Total: 3.24 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.45 Total: -4.94 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.23 Total: -46.71 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.94 -9.25 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883827010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.351 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds