Wall clock time and date at job start Tue Mar 31 2020 00:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32867 * 1 3 3 C 1.47119 * 119.99868 * 2 1 4 4 C 1.32875 * 119.99967 * 175.16082 * 3 2 1 5 5 C 1.50695 * 119.99723 * 5.88179 * 4 3 2 6 6 C 1.53005 * 109.47124 * 126.02687 * 5 4 3 7 7 N 1.46505 * 109.46889 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99739 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99761 * 355.02863 * 8 7 6 10 10 N 1.34771 * 120.00076 * 175.02493 * 8 7 6 11 11 C 1.46928 * 120.63259 * 184.89338 * 10 8 7 12 12 C 1.52759 * 109.01303 * 233.58656 * 11 10 8 13 13 C 1.53039 * 109.38198 * 305.58872 * 12 11 10 14 14 C 1.50701 * 109.44668 * 181.24868 * 13 12 11 15 15 H 1.08002 * 120.00286 * 245.22743 * 14 13 12 16 16 C 1.37877 * 119.99862 * 65.22993 * 14 13 12 17 17 N 1.31521 * 119.99931 * 5.28702 * 16 14 13 18 18 Si 1.86796 * 120.00180 * 185.28984 * 16 14 13 19 19 H 1.48498 * 109.47345 * 94.99536 * 18 16 14 20 20 H 1.48500 * 109.47132 * 214.99546 * 18 16 14 21 21 H 1.48500 * 109.47109 * 334.99472 * 18 16 14 22 22 C 1.53041 * 109.53754 * 61.23928 * 13 12 11 23 23 C 1.46930 * 120.63085 * 5.18128 * 10 8 7 24 24 H 1.08002 * 120.00108 * 359.72563 * 1 2 3 25 25 H 1.07991 * 120.00267 * 179.72585 * 1 2 3 26 26 H 1.07992 * 120.00103 * 180.27426 * 2 1 3 27 27 H 1.07996 * 120.00462 * 355.16311 * 3 2 1 28 28 H 1.08000 * 120.00263 * 185.87590 * 4 3 2 29 29 H 1.09002 * 109.47009 * 246.01952 * 5 4 3 30 30 H 1.08995 * 109.47637 * 6.02147 * 5 4 3 31 31 H 1.09002 * 109.46577 * 299.99529 * 6 5 4 32 32 H 1.08994 * 109.47137 * 60.00022 * 6 5 4 33 33 H 0.96998 * 120.00217 * 359.97438 * 7 6 5 34 34 H 1.09005 * 109.58846 * 353.42582 * 11 10 8 35 35 H 1.09001 * 109.58345 * 113.84789 * 11 10 8 36 36 H 1.09000 * 109.56416 * 185.55042 * 12 11 10 37 37 H 1.08999 * 109.35382 * 65.50055 * 12 11 10 38 38 H 1.08990 * 109.46119 * 301.21963 * 13 12 11 39 39 H 0.96995 * 119.99771 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.49789 * 178.67724 * 22 13 12 41 41 H 1.09007 * 109.52303 * 58.59886 * 22 13 12 42 42 H 1.09000 * 109.58333 * 246.15404 * 23 10 8 43 43 H 1.08998 * 109.58609 * 6.43694 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 3.3894 1.2762 0.0971 5 6 4.1486 -0.0254 0.0736 6 6 5.2208 0.0292 -1.0165 7 7 5.9593 -1.2359 -1.0389 8 6 6.9582 -1.4175 -1.9253 9 8 7.1874 -0.5687 -2.7652 10 7 7.7030 -2.5398 -1.8807 11 6 8.8615 -2.7053 -2.7690 12 6 8.7191 -4.0205 -3.5328 13 6 8.5206 -5.1666 -2.5382 14 6 8.4106 -6.4688 -3.2887 15 1 7.4857 -7.0262 -3.2704 16 6 9.4907 -6.9486 -3.9987 17 7 10.6474 -6.3255 -3.9372 18 14 9.3114 -8.4836 -5.0480 19 1 9.0143 -8.0932 -6.4496 20 1 10.5761 -9.2609 -5.0081 21 1 8.2014 -9.3170 -4.5203 22 6 7.2392 -4.9311 -1.7353 23 6 7.3681 -3.6239 -0.9471 24 1 -0.5400 0.9353 0.0045 25 1 -0.5400 -0.9352 -0.0045 26 1 1.8686 -0.9352 -0.0045 27 1 1.5272 2.2077 -0.0789 28 1 3.9225 2.2106 0.1927 29 1 4.6228 -0.1869 1.0417 30 1 3.4599 -0.8441 -0.1348 31 1 4.7467 0.1907 -1.9846 32 1 5.9096 0.8478 -0.8081 33 1 5.7293 -1.9428 -0.4158 34 1 8.9015 -1.8763 -3.4757 35 1 9.7761 -2.7273 -2.1764 36 1 9.6193 -4.2006 -4.1205 37 1 7.8566 -3.9612 -4.1966 38 1 9.3719 -5.2096 -1.8591 39 1 11.4071 -6.6629 -4.4369 40 1 7.0859 -5.7594 -1.0436 41 1 6.3902 -4.8635 -2.4156 42 1 8.1584 -3.7223 -0.2029 43 1 6.4242 -3.3997 -0.4503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883827010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:21 Heat of formation + Delta-G solvation = -19.443137 kcal Electronic energy + Delta-G solvation = -21301.962142 eV Core-core repulsion = 18153.907867 eV Total energy + Delta-G solvation = -3148.054276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37465 -38.70026 -37.68058 -35.78604 -35.28603 -33.21127 -32.58069 -31.68690 -29.39626 -27.83824 -24.97242 -24.28873 -23.48000 -22.64363 -21.75489 -20.51889 -19.35402 -18.83718 -18.29602 -17.34805 -16.93936 -16.52653 -16.41625 -15.68721 -15.34817 -15.13025 -15.05409 -14.88393 -14.47627 -14.20692 -13.92356 -13.41829 -13.23275 -13.09987 -13.04519 -12.94174 -12.78686 -12.50340 -12.41138 -12.18236 -11.96161 -11.63752 -11.44876 -11.42385 -11.30331 -10.88275 -10.81299 -10.41843 -10.19903 -9.37982 -9.19091 -8.10198 -6.20266 0.49981 1.40617 1.43125 1.51828 1.70715 2.14399 2.24219 2.44262 2.97505 3.19728 3.86131 4.02862 4.07837 4.19965 4.21695 4.26769 4.34572 4.40519 4.48511 4.61039 4.63800 4.71144 4.78312 4.90786 4.91801 4.97611 5.01846 5.09856 5.19385 5.24314 5.41867 5.49852 5.51350 5.52793 5.65716 5.67597 5.82879 5.98256 6.04486 6.05241 6.08190 6.38325 6.92097 7.01325 7.47254 7.56921 8.96772 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.003109 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.130294 B = 9003.001291 C = 9651.556909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.101 4.101 6 C 0.145 3.855 7 N -0.734 5.734 8 C 0.700 3.300 9 O -0.641 6.641 10 N -0.622 5.622 11 C 0.139 3.861 12 C -0.107 4.107 13 C 0.045 3.955 14 C -0.531 4.531 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.948 3.052 19 H -0.282 1.282 20 H -0.284 1.284 21 H -0.266 1.266 22 C -0.116 4.116 23 C 0.117 3.883 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.024 0.976 38 H 0.009 0.991 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 11.798 12.061 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.172 4.172 3 C -0.159 4.159 4 C -0.161 4.161 5 C -0.138 4.138 6 C 0.021 3.979 7 N -0.393 5.393 8 C 0.402 3.598 9 O -0.524 6.524 10 N -0.358 5.358 11 C 0.015 3.985 12 C -0.146 4.146 13 C 0.026 3.974 14 C -0.569 4.569 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.774 3.226 19 H -0.208 1.208 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.154 4.154 23 C -0.005 4.005 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.427 12.397 11.430 22.855 hybrid contribution 0.322 -1.205 -0.806 1.485 sum -15.106 11.192 10.624 21.594 Atomic orbital electron populations 1.24579 0.95597 1.02797 0.98479 1.22292 0.95955 0.97393 1.01514 1.22077 0.94962 0.97306 1.01538 1.23284 0.94953 0.98485 0.99343 1.20947 0.96688 0.97416 0.98771 1.21124 0.93075 0.84538 0.99156 1.45156 1.35868 1.19653 1.38658 1.16046 0.80079 0.81983 0.81738 1.90839 1.73924 1.46445 1.41177 1.47378 1.30407 1.16827 1.41169 1.21303 0.86613 0.97983 0.92559 1.21654 1.00044 0.94073 0.98836 1.18602 0.93220 0.92397 0.93157 1.21574 0.97874 1.06778 1.30707 0.92957 1.25703 0.95053 0.99825 0.97943 1.70041 1.01317 1.41758 1.42532 0.85703 0.77607 0.80113 0.79196 1.20777 1.21002 1.19068 1.21872 0.98445 0.96370 0.98761 1.21829 1.01704 0.85881 0.91072 0.87714 0.87300 0.86215 0.85769 0.85617 0.88714 0.89562 0.93326 0.92221 0.75192 0.91480 0.91990 0.92427 0.95719 0.97326 0.93086 0.90697 0.93642 0.90573 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.43 66.64 0.96 -1.18 16 2 C -0.15 -2.14 9.31 23.43 0.22 -1.92 16 3 C -0.14 -1.93 9.83 23.43 0.23 -1.70 16 4 C -0.14 -1.92 9.59 24.51 0.24 -1.69 16 5 C -0.10 -1.40 5.57 29.85 0.17 -1.23 16 6 C 0.15 3.08 5.66 86.38 0.49 3.57 16 7 N -0.73 -18.06 5.47 -478.52 -2.62 -20.68 16 8 C 0.70 24.63 8.30 179.06 1.49 26.11 16 9 O -0.64 -27.94 15.77 -4.01 -0.06 -28.00 16 10 N -0.62 -21.96 2.98 -837.74 -2.50 -24.46 16 11 C 0.14 5.70 6.41 86.22 0.55 6.25 16 12 C -0.11 -5.10 5.19 30.53 0.16 -4.94 16 13 C 0.04 2.14 1.94 -11.51 -0.02 2.12 16 14 C -0.53 -28.53 8.49 25.60 0.22 -28.31 16 15 H 0.05 2.76 7.75 -2.91 -0.02 2.74 16 16 C 0.01 0.74 5.26 84.65 0.44 1.19 16 17 N -0.92 -52.62 11.94 21.45 0.26 -52.36 16 18 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C -0.12 -4.28 5.30 30.67 0.16 -4.11 16 23 C 0.12 3.41 6.39 86.36 0.55 3.96 16 24 H 0.10 1.06 8.05 -2.91 -0.02 1.04 16 25 H 0.11 1.09 8.06 -2.92 -0.02 1.07 16 26 H 0.12 1.56 5.82 -2.91 -0.02 1.55 16 27 H 0.12 1.42 8.06 -2.91 -0.02 1.39 16 28 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.12 5.32 -2.39 -0.01 1.11 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.41 7.51 5.96 -92.71 -0.55 6.96 16 34 H 0.07 2.87 7.00 -2.38 -0.02 2.86 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 3.08 6.68 -2.39 -0.02 3.06 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.01 0.45 8.12 -2.39 -0.02 0.43 16 39 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.04 1.72 8.14 -2.38 -0.02 1.71 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.10 2.09 5.64 -2.39 -0.01 2.08 16 Total: -1.00 -67.90 346.65 3.39 -64.51 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.43 Total: 17.47 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.85 Total: -1.89 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -4.85 Total: -97.50 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.06 Total: -28.00 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.90 3.39 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883827010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.062 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds