Wall clock time and date at job start Tue Mar 31 2020 00:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47115 * 120.00165 * 2 1 4 4 C 1.32870 * 120.00165 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99974 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46795 * 125.00233 * 5 4 3 7 7 N 1.46505 * 109.47003 * 180.02562 * 6 5 4 8 8 C 1.34775 * 119.99931 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99976 * 355.02223 * 8 7 6 10 10 N 1.34777 * 120.00115 * 175.01644 * 8 7 6 11 11 C 1.46924 * 120.63107 * 184.94641 * 10 8 7 12 12 C 1.52752 * 109.00973 * 233.58758 * 11 10 8 13 13 C 1.53039 * 109.38667 * 305.59043 * 12 11 10 14 14 C 1.50700 * 109.45268 * 181.25479 * 13 12 11 15 15 H 1.08007 * 119.99964 * 239.93925 * 14 13 12 16 16 C 1.37875 * 120.00209 * 59.93623 * 14 13 12 17 17 N 1.31514 * 119.99693 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00291 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46950 * 90.00159 * 18 16 14 20 20 H 1.48499 * 109.47657 * 210.00190 * 18 16 14 21 21 H 1.48502 * 109.47176 * 330.00657 * 18 16 14 22 22 C 1.53048 * 109.53757 * 61.24062 * 13 12 11 23 23 C 1.46931 * 120.62888 * 5.23323 * 10 8 7 24 24 H 1.08001 * 120.00059 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99706 * 180.02562 * 2 1 3 27 27 H 1.08004 * 119.99908 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.99706 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.47482 * 5.00911 * 5 4 3 30 30 H 1.08997 * 109.47943 * 245.00168 * 5 4 3 31 31 H 1.08990 * 109.46943 * 60.00283 * 6 5 4 32 32 H 1.09002 * 109.46907 * 299.99885 * 6 5 4 33 33 H 0.97006 * 119.99968 * 359.72475 * 7 6 5 34 34 H 1.09000 * 109.58796 * 353.42776 * 11 10 8 35 35 H 1.09003 * 109.58166 * 113.84584 * 11 10 8 36 36 H 1.08999 * 109.56524 * 185.55364 * 12 11 10 37 37 H 1.09002 * 109.36284 * 65.50232 * 12 11 10 38 38 H 1.09001 * 109.46250 * 301.22402 * 13 12 11 39 39 H 0.96997 * 119.99768 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.49683 * 178.68771 * 22 13 12 41 41 H 1.08992 * 109.51937 * 58.60371 * 22 13 12 42 42 H 1.08994 * 109.58628 * 246.15456 * 23 10 8 43 43 H 1.09005 * 109.58615 * 6.43840 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3930 1.2740 -0.0005 5 6 4.1465 2.5791 -0.0011 6 6 5.1185 2.6073 1.1802 7 7 5.8507 3.8763 1.1800 8 6 6.7681 4.1251 2.1355 9 8 6.9240 3.3373 3.0485 10 7 7.5127 5.2471 2.0789 11 6 8.5897 5.4805 3.0506 12 6 8.3801 6.8433 3.7079 13 6 8.2670 7.9180 2.6242 14 6 8.0911 9.2673 3.2719 15 1 7.2071 9.8533 3.0674 16 6 9.0583 9.7537 4.1255 17 7 10.1348 9.0403 4.3742 18 14 8.8406 11.4265 4.9277 19 1 8.1314 11.2659 6.2226 20 1 10.1724 12.0388 5.1654 21 1 8.0445 12.3047 4.0331 22 6 7.0602 7.6196 1.7315 23 6 7.2586 6.2630 1.0483 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8686 -0.9353 -0.0004 27 1 1.5243 2.2094 0.0004 28 1 3.9329 0.3387 -0.0014 29 1 3.4416 3.4057 0.0887 30 1 4.7039 2.6765 -0.9327 31 1 5.8234 1.7808 1.0904 32 1 4.5611 2.5099 2.1118 33 1 5.6782 4.5356 0.4897 34 1 8.5693 4.7016 3.8129 35 1 9.5522 5.4687 2.5390 36 1 9.2258 7.0693 4.3574 37 1 7.4634 6.8232 4.2973 38 1 9.1740 7.9209 2.0196 39 1 10.8152 9.3823 4.9750 40 1 6.9666 8.3981 0.9742 41 1 6.1557 7.5923 2.3390 42 1 8.1102 6.3163 0.3701 43 1 6.3615 5.9989 0.4882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883827011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:25 Heat of formation + Delta-G solvation = -6.486454 kcal Electronic energy + Delta-G solvation = -21085.040823 eV Core-core repulsion = 17937.548391 eV Total energy + Delta-G solvation = -3147.492432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93155 -37.24536 -36.49943 -34.84055 -33.54442 -32.40764 -31.00484 -30.14752 -28.37261 -26.08250 -23.74067 -22.88864 -22.02633 -20.91449 -20.22036 -19.85924 -18.79068 -17.62963 -16.33620 -16.05258 -15.87553 -15.25032 -14.64783 -14.58203 -14.17082 -14.07153 -13.65329 -13.17935 -12.88281 -12.71219 -12.50429 -12.41134 -12.35505 -12.07584 -11.78285 -11.44351 -11.30556 -11.14600 -11.08710 -10.92401 -10.65297 -10.41621 -10.04719 -9.75277 -9.54446 -9.17586 -8.95529 -8.87115 -8.63932 -8.35704 -7.87011 -6.00749 -4.07482 1.04452 2.76070 3.06516 3.29498 3.36593 3.38895 3.58918 4.19296 4.42002 4.47224 4.69121 4.79894 4.93985 5.08109 5.19666 5.28920 5.37640 5.38979 5.48092 5.73946 5.77212 5.80716 5.91959 6.01885 6.07958 6.21565 6.28668 6.35639 6.44280 6.51795 6.58634 6.62828 6.67727 6.83201 6.99625 7.16500 7.26410 7.51228 7.72492 7.94704 8.07753 8.33307 8.41578 8.95658 8.97442 9.57464 11.04621 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034293 B = 0.002744 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.297216 B =10200.115662 C =10546.596375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C -0.138 4.138 4 C -0.132 4.132 5 C -0.104 4.104 6 C 0.144 3.856 7 N -0.755 5.755 8 C 0.704 3.296 9 O -0.601 6.601 10 N -0.619 5.619 11 C 0.126 3.874 12 C -0.124 4.124 13 C 0.049 3.951 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.124 4.124 23 C 0.114 3.886 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.037 0.963 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.568 -13.454 -11.086 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.145 4.145 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.142 4.142 6 C 0.019 3.981 7 N -0.414 5.414 8 C 0.406 3.594 9 O -0.480 6.480 10 N -0.355 5.355 11 C 0.004 3.996 12 C -0.163 4.163 13 C 0.031 3.969 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.162 4.162 23 C -0.010 4.010 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.252 -14.021 -10.311 21.284 hybrid contribution -0.230 1.278 0.119 1.304 sum -12.482 -12.742 -10.192 20.543 Atomic orbital electron populations 1.24363 0.95665 1.01979 1.00049 1.22002 0.95485 0.96724 1.00309 1.21965 0.94669 0.96867 1.02097 1.23233 0.94877 0.98272 0.98684 1.20911 0.98324 0.96115 0.98845 1.21030 0.93477 0.85580 0.97979 1.45289 1.43421 1.20690 1.31960 1.15865 0.79197 0.82201 0.82159 1.90866 1.72110 1.49244 1.35788 1.47460 1.35837 1.18407 1.33801 1.21676 0.87126 0.99961 0.90793 1.21947 1.02761 0.91354 1.00205 1.18625 0.92180 0.93802 0.92298 1.21183 1.05067 1.02059 1.26834 0.92773 1.24969 0.95199 0.97318 0.96542 1.69845 1.09067 1.37323 1.36620 0.86616 0.77345 0.84365 0.79778 1.20744 1.21262 1.20015 1.22015 1.01448 0.93354 0.99417 1.21706 0.99490 0.89763 0.90011 0.88182 0.88359 0.86995 0.86821 0.86700 0.90712 0.90077 0.91813 0.91641 0.76925 0.90554 0.92585 0.87825 0.94397 0.95471 0.92953 0.92161 0.92918 0.91937 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 14.43 28.88 0.42 -0.80 16 2 C -0.13 -0.95 9.83 -37.83 -0.37 -1.32 16 3 C -0.14 -1.09 9.44 -37.83 -0.36 -1.45 16 4 C -0.13 -1.04 9.22 -36.16 -0.33 -1.37 16 5 C -0.10 -0.84 5.78 -27.88 -0.16 -1.00 16 6 C 0.14 1.66 5.66 -4.03 -0.02 1.63 16 7 N -0.75 -10.26 5.47 -65.22 -0.36 -10.62 16 8 C 0.70 12.95 8.30 -86.92 -0.72 12.23 16 9 O -0.60 -13.22 15.77 5.28 0.08 -13.14 16 10 N -0.62 -11.43 2.98 -178.76 -0.53 -11.96 16 11 C 0.13 2.60 6.41 -3.94 -0.03 2.57 16 12 C -0.12 -2.91 5.14 -26.84 -0.14 -3.05 16 13 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 14 C -0.51 -13.69 8.56 -34.44 -0.29 -13.99 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.84 11.31 55.43 0.63 -24.21 16 18 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 23 C 0.11 1.81 6.39 -3.71 -0.02 1.79 16 24 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 25 H 0.10 0.60 8.05 -52.49 -0.42 0.18 16 26 H 0.11 0.73 8.06 -52.49 -0.42 0.30 16 27 H 0.11 0.84 7.87 -52.48 -0.41 0.43 16 28 H 0.12 0.82 8.05 -52.49 -0.42 0.40 16 29 H 0.07 0.57 7.82 -51.93 -0.41 0.17 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.39 4.40 5.96 -40.82 -0.24 4.15 16 34 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.10 2.70 6.03 -51.93 -0.31 2.39 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.73 5.65 -51.93 -0.29 0.44 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -30.82 350.07 -9.45 -40.27 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.07 Total: 3.13 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.46 Total: -4.74 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.26 Total: -46.79 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.82 -9.45 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883827011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.780 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds