Wall clock time and date at job start Tue Mar 31 2020 00:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47115 * 120.00165 * 2 1 4 4 C 1.32870 * 120.00165 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99974 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46795 * 125.00233 * 5 4 3 7 7 N 1.46505 * 109.47003 * 180.02562 * 6 5 4 8 8 C 1.34775 * 119.99931 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99976 * 355.02223 * 8 7 6 10 10 N 1.34777 * 120.00115 * 175.01644 * 8 7 6 11 11 C 1.46924 * 120.63107 * 184.94641 * 10 8 7 12 12 C 1.52752 * 109.00973 * 233.58758 * 11 10 8 13 13 C 1.53039 * 109.38667 * 305.59043 * 12 11 10 14 14 C 1.50700 * 109.45268 * 181.25479 * 13 12 11 15 15 H 1.08007 * 119.99964 * 239.93925 * 14 13 12 16 16 C 1.37875 * 120.00209 * 59.93623 * 14 13 12 17 17 N 1.31514 * 119.99693 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00291 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46950 * 90.00159 * 18 16 14 20 20 H 1.48499 * 109.47657 * 210.00190 * 18 16 14 21 21 H 1.48502 * 109.47176 * 330.00657 * 18 16 14 22 22 C 1.53048 * 109.53757 * 61.24062 * 13 12 11 23 23 C 1.46931 * 120.62888 * 5.23323 * 10 8 7 24 24 H 1.08001 * 120.00059 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99706 * 180.02562 * 2 1 3 27 27 H 1.08004 * 119.99908 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.99706 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.47482 * 5.00911 * 5 4 3 30 30 H 1.08997 * 109.47943 * 245.00168 * 5 4 3 31 31 H 1.08990 * 109.46943 * 60.00283 * 6 5 4 32 32 H 1.09002 * 109.46907 * 299.99885 * 6 5 4 33 33 H 0.97006 * 119.99968 * 359.72475 * 7 6 5 34 34 H 1.09000 * 109.58796 * 353.42776 * 11 10 8 35 35 H 1.09003 * 109.58166 * 113.84584 * 11 10 8 36 36 H 1.08999 * 109.56524 * 185.55364 * 12 11 10 37 37 H 1.09002 * 109.36284 * 65.50232 * 12 11 10 38 38 H 1.09001 * 109.46250 * 301.22402 * 13 12 11 39 39 H 0.96997 * 119.99768 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.49683 * 178.68771 * 22 13 12 41 41 H 1.08992 * 109.51937 * 58.60371 * 22 13 12 42 42 H 1.08994 * 109.58628 * 246.15456 * 23 10 8 43 43 H 1.09005 * 109.58615 * 6.43840 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3930 1.2740 -0.0005 5 6 4.1465 2.5791 -0.0011 6 6 5.1185 2.6073 1.1802 7 7 5.8507 3.8763 1.1800 8 6 6.7681 4.1251 2.1355 9 8 6.9240 3.3373 3.0485 10 7 7.5127 5.2471 2.0789 11 6 8.5897 5.4805 3.0506 12 6 8.3801 6.8433 3.7079 13 6 8.2670 7.9180 2.6242 14 6 8.0911 9.2673 3.2719 15 1 7.2071 9.8533 3.0674 16 6 9.0583 9.7537 4.1255 17 7 10.1348 9.0403 4.3742 18 14 8.8406 11.4265 4.9277 19 1 8.1314 11.2659 6.2226 20 1 10.1724 12.0388 5.1654 21 1 8.0445 12.3047 4.0331 22 6 7.0602 7.6196 1.7315 23 6 7.2586 6.2630 1.0483 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8686 -0.9353 -0.0004 27 1 1.5243 2.2094 0.0004 28 1 3.9329 0.3387 -0.0014 29 1 3.4416 3.4057 0.0887 30 1 4.7039 2.6765 -0.9327 31 1 5.8234 1.7808 1.0904 32 1 4.5611 2.5099 2.1118 33 1 5.6782 4.5356 0.4897 34 1 8.5693 4.7016 3.8129 35 1 9.5522 5.4687 2.5390 36 1 9.2258 7.0693 4.3574 37 1 7.4634 6.8232 4.2973 38 1 9.1740 7.9209 2.0196 39 1 10.8152 9.3823 4.9750 40 1 6.9666 8.3981 0.9742 41 1 6.1557 7.5923 2.3390 42 1 8.1102 6.3163 0.3701 43 1 6.3615 5.9989 0.4882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883827011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:24 Heat of formation + Delta-G solvation = -23.829913 kcal Electronic energy + Delta-G solvation = -21085.792892 eV Core-core repulsion = 17937.548391 eV Total energy + Delta-G solvation = -3148.244501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36700 -38.67126 -37.41875 -35.83944 -35.32769 -33.41169 -32.68022 -31.67239 -29.29460 -27.84114 -25.02025 -24.32171 -23.54320 -21.85635 -21.43611 -20.54384 -20.21116 -19.08092 -18.30005 -17.30435 -16.85484 -16.54439 -16.26967 -15.61318 -15.26387 -15.16309 -14.93315 -14.88877 -14.50548 -14.22697 -13.91313 -13.46861 -13.21787 -13.08576 -12.98250 -12.89947 -12.80572 -12.46294 -12.17113 -12.14949 -11.95142 -11.85152 -11.71615 -11.42479 -11.32343 -10.92972 -10.78376 -10.40245 -10.20094 -9.37463 -9.19757 -8.06643 -6.20462 0.48994 1.41544 1.43297 1.52162 1.71540 2.14572 2.24214 2.44446 2.97639 3.19880 3.85050 4.03830 4.08741 4.15710 4.24344 4.27669 4.34899 4.48574 4.51109 4.58807 4.62075 4.72577 4.75233 4.91672 4.92218 4.98320 4.99795 5.09958 5.20343 5.24977 5.46555 5.47808 5.51724 5.52664 5.66940 5.68153 5.81096 5.99191 6.03212 6.08860 6.13279 6.39488 6.91139 7.01926 7.47513 7.57269 8.96735 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034293 B = 0.002744 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.297216 B =10200.115662 C =10546.596375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.147 4.147 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.091 4.091 6 C 0.143 3.857 7 N -0.735 5.735 8 C 0.699 3.301 9 O -0.642 6.642 10 N -0.622 5.622 11 C 0.138 3.862 12 C -0.112 4.112 13 C 0.045 3.955 14 C -0.532 4.532 15 H 0.053 0.947 16 C 0.011 3.989 17 N -0.915 5.915 18 Si 0.951 3.049 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.267 1.267 22 C -0.117 4.117 23 C 0.117 3.883 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.410 0.590 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.018 0.982 38 H 0.006 0.994 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.221 -13.489 -12.976 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.165 4.165 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.128 4.128 6 C 0.019 3.981 7 N -0.394 5.394 8 C 0.401 3.599 9 O -0.525 6.525 10 N -0.358 5.358 11 C 0.015 3.985 12 C -0.151 4.151 13 C 0.026 3.974 14 C -0.570 4.570 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.555 5.555 18 Si 0.777 3.223 19 H -0.207 1.207 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.155 4.155 23 C -0.005 4.005 24 H 0.131 0.869 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.037 0.963 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.944 -14.045 -12.257 23.280 hybrid contribution 0.228 1.262 0.713 1.468 sum -13.717 -12.783 -11.544 22.018 Atomic orbital electron populations 1.24572 0.95554 1.02846 0.98604 1.22146 0.95973 0.96899 1.01452 1.22114 0.94850 0.97322 1.01626 1.23260 0.94941 0.98395 0.99318 1.20810 0.97664 0.96570 0.97777 1.21152 0.93644 0.84350 0.98929 1.45158 1.41768 1.21639 1.30791 1.16064 0.79689 0.81657 0.82508 1.90838 1.73381 1.50540 1.37703 1.47412 1.35370 1.19250 1.33814 1.21326 0.88376 0.97609 0.91183 1.21710 1.00324 0.93287 0.99787 1.18610 0.93366 0.92749 0.92637 1.21592 1.04899 1.03426 1.27047 0.92897 1.25725 0.95113 1.00628 0.97273 1.69978 1.09679 1.38691 1.37140 0.85670 0.77293 0.80577 0.78775 1.20733 1.21027 1.19108 1.21876 0.98618 0.95983 0.99021 1.21830 1.02239 0.87138 0.89269 0.86947 0.87963 0.86449 0.86411 0.86293 0.89848 0.88426 0.92277 0.93323 0.75138 0.91663 0.91979 0.90899 0.96326 0.97634 0.93085 0.90629 0.93753 0.90495 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 14.43 66.64 0.96 -1.09 16 2 C -0.15 -1.96 9.83 23.43 0.23 -1.73 16 3 C -0.14 -1.98 9.44 23.43 0.22 -1.76 16 4 C -0.14 -1.94 9.22 24.51 0.23 -1.71 16 5 C -0.09 -1.22 5.78 29.85 0.17 -1.04 16 6 C 0.14 3.04 5.66 86.38 0.49 3.53 16 7 N -0.73 -18.15 5.47 -478.51 -2.62 -20.77 16 8 C 0.70 24.85 8.30 179.05 1.49 26.34 16 9 O -0.64 -28.29 15.77 -4.01 -0.06 -28.35 16 10 N -0.62 -22.21 2.98 -837.74 -2.50 -24.70 16 11 C 0.14 5.75 6.41 86.22 0.55 6.31 16 12 C -0.11 -5.41 5.14 30.52 0.16 -5.26 16 13 C 0.04 2.15 2.07 -11.51 -0.02 2.13 16 14 C -0.53 -28.56 8.56 25.60 0.22 -28.34 16 15 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 16 C 0.01 0.61 5.30 84.65 0.45 1.06 16 17 N -0.92 -52.23 11.31 21.45 0.24 -51.99 16 18 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.12 -4.31 5.30 30.67 0.16 -4.15 16 23 C 0.12 3.42 6.39 86.36 0.55 3.97 16 24 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 25 H 0.10 1.06 8.05 -2.91 -0.02 1.04 16 26 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 27 H 0.12 1.50 7.87 -2.91 -0.02 1.48 16 28 H 0.12 1.51 8.05 -2.91 -0.02 1.49 16 29 H 0.08 1.00 7.82 -2.39 -0.02 0.99 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.41 7.50 5.96 -92.70 -0.55 6.95 16 34 H 0.06 2.85 6.99 -2.39 -0.02 2.83 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 3.97 6.03 -2.39 -0.01 3.95 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.10 2.10 5.65 -2.38 -0.01 2.09 16 Total: -1.00 -67.88 350.07 3.37 -64.51 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.42 Total: 17.69 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.85 Total: -1.74 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.87 Total: -97.46 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.88 3.37 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883827011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.681 kcal (2) G-P(sol) polarization free energy of solvation -67.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds