Wall clock time and date at job start Tue Mar 31 2020 00:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99732 * 2 1 4 4 C 1.52993 * 109.47224 * 125.00318 * 3 2 1 5 5 O 1.42898 * 109.52595 * 64.99816 * 4 3 2 6 6 C 1.53121 * 109.52309 * 304.87412 * 4 3 2 7 7 C 1.53046 * 109.27870 * 182.50640 * 6 4 3 8 8 N 1.46846 * 109.57363 * 59.08023 * 7 6 4 9 9 C 1.46903 * 110.99902 * 174.19630 * 8 7 6 10 10 C 1.53000 * 109.47065 * 190.36904 * 9 8 7 11 11 H 1.08993 * 109.47706 * 303.65868 * 10 9 8 12 12 C 1.47202 * 109.47264 * 63.65753 * 10 9 8 13 13 N 7.94637 * 102.05251 * 43.80544 * 2 1 3 14 14 C 1.52997 * 109.47249 * 183.65494 * 10 9 8 15 15 C 1.50702 * 109.47306 * 175.00318 * 14 10 9 16 16 H 1.08002 * 120.00035 * 359.97438 * 15 14 10 17 17 C 1.37880 * 120.00045 * 179.97438 * 15 14 10 18 18 N 1.31514 * 119.99936 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99943 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47093 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46936 * 120.00404 * 19 17 15 22 22 H 1.48498 * 109.47172 * 240.00123 * 19 17 15 23 23 C 1.46856 * 111.20024 * 298.29178 * 8 7 6 24 24 C 1.53034 * 109.52295 * 61.74300 * 23 8 7 25 25 H 1.07996 * 120.00520 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99640 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00520 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47180 * 4.99604 * 3 2 1 29 29 H 1.09006 * 109.46725 * 244.99954 * 3 2 1 30 30 H 0.96701 * 114.00279 * 300.00397 * 5 4 3 31 31 H 1.09000 * 109.50183 * 302.37965 * 6 4 3 32 32 H 1.08997 * 109.50523 * 62.49920 * 6 4 3 33 33 H 1.09001 * 109.40533 * 299.07098 * 7 6 4 34 34 H 1.08993 * 109.46410 * 179.12826 * 7 6 4 35 35 H 1.09001 * 109.47160 * 310.37120 * 9 8 7 36 36 H 1.08996 * 109.46920 * 70.37213 * 9 8 7 37 37 H 1.09006 * 109.47030 * 295.00408 * 14 10 9 38 38 H 1.08997 * 109.47074 * 54.99853 * 14 10 9 39 39 H 0.97000 * 120.00207 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.45913 * 301.72826 * 23 8 7 41 41 H 1.08996 * 109.46213 * 181.75882 * 23 8 7 42 42 H 1.08992 * 109.50526 * 180.88286 * 24 23 8 43 43 H 1.09003 * 109.50289 * 60.75872 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 8 4.0301 0.3229 1.0056 6 6 2.2677 1.0748 2.4812 7 6 3.2336 1.1660 3.6648 8 7 3.8507 2.4982 3.6948 9 6 4.6788 2.6679 4.8962 10 6 5.0923 4.1351 5.0275 11 1 5.6069 4.4503 4.1198 12 6 3.8941 4.9667 5.2261 13 7 2.9692 5.6084 5.3793 14 6 6.0289 4.2957 6.2266 15 6 6.5333 5.7146 6.2837 16 1 6.2177 6.4303 5.5388 17 6 7.3976 6.0993 7.2867 18 7 7.7822 5.2277 8.1934 19 14 8.0233 7.8579 7.3570 20 1 7.4460 8.6341 6.2303 21 1 7.6163 8.4770 8.6439 22 1 9.5046 7.8608 7.2530 23 6 4.6324 2.7488 2.4771 24 6 3.7080 2.7065 1.2582 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 3.6742 -0.5745 0.9507 31 1 1.4826 1.8223 2.5950 32 1 1.8224 0.0805 2.4494 33 1 4.0100 0.4085 3.5579 34 1 2.6875 0.9978 4.5930 35 1 4.1078 2.3711 5.7760 36 1 5.5697 2.0453 4.8142 37 1 5.4872 4.0654 7.1441 38 1 6.8729 3.6139 6.1222 39 1 8.3905 5.4982 8.8988 40 1 5.4022 1.9838 2.3759 41 1 5.1022 3.7302 2.5427 42 1 4.2910 2.8770 0.3532 43 1 2.9461 3.4803 1.3522 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886757571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:32 Heat of formation + Delta-G solvation = -19.903768 kcal Electronic energy + Delta-G solvation = -21853.307792 eV Core-core repulsion = 18705.233542 eV Total energy + Delta-G solvation = -3148.074250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00514 -37.50193 -35.64602 -34.47062 -33.68842 -32.41922 -31.22155 -30.56672 -27.97123 -26.10945 -23.71768 -23.13944 -21.79966 -21.52217 -19.95250 -19.83373 -16.71043 -16.67736 -16.48306 -16.10190 -15.32474 -14.87909 -14.81881 -14.51700 -14.27611 -13.73786 -13.46820 -13.27884 -13.11349 -12.71657 -12.37665 -12.22699 -12.02224 -11.88048 -11.79124 -11.57975 -11.26550 -11.22336 -11.12139 -11.11154 -10.98102 -10.66804 -10.51377 -10.36521 -10.19642 -9.94007 -9.50411 -9.45438 -9.17302 -8.44188 -8.08272 -6.07855 -4.10707 1.93999 3.29716 3.37877 3.42681 3.77547 3.87562 3.97177 4.16051 4.41121 4.43380 4.62200 4.65658 4.83932 4.92087 4.99531 5.20070 5.30334 5.31097 5.40777 5.43569 5.55253 5.56363 5.59423 5.68721 5.75727 5.78251 5.89283 5.97589 6.02790 6.07796 6.12703 6.27890 6.29530 6.41942 6.43273 6.55724 7.26122 7.28639 7.45879 7.49726 7.55809 7.87794 8.25584 8.63287 8.94348 9.54660 11.03143 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035726 B = 0.003386 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.546850 B = 8267.411800 C = 8350.554656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C -0.121 4.121 4 C 0.138 3.862 5 O -0.555 6.555 6 C -0.137 4.137 7 C 0.060 3.940 8 N -0.542 5.542 9 C 0.064 3.936 10 C 0.010 3.990 11 H 0.100 0.900 12 C 0.258 3.742 13 N -0.482 5.482 14 C 0.031 3.969 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.054 3.946 24 C -0.101 4.101 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.370 0.630 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 -13.446 -15.860 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.173 4.173 3 C -0.158 4.158 4 C 0.097 3.903 5 O -0.360 6.360 6 C -0.175 4.175 7 C -0.068 4.068 8 N -0.266 5.266 9 C -0.065 4.065 10 C -0.012 4.012 11 H 0.117 0.883 12 C -0.058 4.058 13 N -0.159 5.159 14 C -0.008 4.008 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.074 4.074 24 C -0.139 4.139 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.217 0.783 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.775 -11.623 -15.441 22.127 hybrid contribution 0.944 -0.391 0.063 1.023 sum -9.832 -12.014 -15.377 21.851 Atomic orbital electron populations 1.23862 0.95922 1.01913 1.01094 1.22851 0.96114 0.98303 1.00038 1.21482 0.98772 0.96006 0.99566 1.21219 0.87349 0.89226 0.92458 1.86576 1.35647 1.17971 1.95836 1.22240 0.98646 1.02074 0.94544 1.21952 0.96935 0.89791 0.98100 1.61987 1.34083 1.28180 1.02382 1.22196 0.96187 0.95769 0.92323 1.19259 0.88578 0.89597 1.03800 0.88269 1.28842 0.93159 0.92492 0.91340 1.80971 1.13131 1.11017 1.10776 1.19175 0.93078 0.98097 0.90414 1.21184 1.27531 0.95532 1.12001 0.92460 1.24957 0.96199 0.97421 0.95442 1.69949 1.34080 1.34158 1.14876 0.86539 0.78549 0.84919 0.78109 1.19662 1.20989 1.20869 1.22076 0.94737 1.01811 0.88793 1.21591 0.99721 0.94158 0.98410 0.88516 0.88561 0.87526 0.90473 0.90207 0.78341 0.90431 0.91423 0.94293 0.91031 0.90345 0.92886 0.95591 0.94473 0.92877 0.93699 0.90078 0.90937 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 14.32 29.02 0.42 -0.89 16 2 C -0.16 -1.08 7.66 -36.02 -0.28 -1.36 16 3 C -0.12 -0.97 4.97 -27.88 -0.14 -1.11 16 4 C 0.14 1.31 0.74 -90.50 -0.07 1.25 16 5 O -0.55 -5.44 11.84 -35.23 -0.42 -5.85 16 6 C -0.14 -1.36 4.71 -26.65 -0.13 -1.49 16 7 C 0.06 0.71 5.32 -3.83 -0.02 0.69 16 8 N -0.54 -7.54 4.32 -234.66 -1.01 -8.55 16 9 C 0.06 0.99 4.34 -3.82 -0.02 0.97 16 10 C 0.01 0.18 2.12 -93.41 -0.20 -0.02 16 11 H 0.10 1.77 6.29 -51.93 -0.33 1.44 16 12 C 0.26 5.49 13.64 -20.76 -0.28 5.21 16 13 N -0.48 -11.07 18.54 42.16 0.78 -10.29 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 15 C -0.52 -14.09 8.60 -34.44 -0.30 -14.39 16 16 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.05 0.70 5.16 -3.83 -0.02 0.68 16 24 C -0.10 -1.12 5.11 -26.65 -0.14 -1.26 16 25 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 26 H 0.10 0.56 8.06 -52.48 -0.42 0.14 16 27 H 0.11 0.61 7.22 -52.49 -0.38 0.23 16 28 H 0.08 0.63 7.79 -51.93 -0.40 0.22 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.37 2.44 7.76 45.56 0.35 2.79 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.57 7.19 -51.93 -0.37 0.20 16 33 H 0.04 0.46 7.76 -51.93 -0.40 0.06 16 34 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 35 H 0.08 1.22 7.98 -51.93 -0.41 0.80 16 36 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.04 0.60 7.76 -51.93 -0.40 0.20 16 41 H 0.08 1.10 6.16 -51.93 -0.32 0.78 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -30.79 348.10 -7.48 -38.27 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.41 Total: -0.80 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.38 Total: -9.49 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.50 Total: -43.82 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.42 Total: -5.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.79 -7.48 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886757571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.369 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds