Wall clock time and date at job start Tue Mar 31 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 119.99966 * 2 1 4 4 N 1.46900 * 109.47092 * 124.14404 * 3 2 1 5 5 C 1.46905 * 111.00135 * 300.27539 * 4 3 2 6 6 C 1.50696 * 109.46987 * 288.16299 * 5 4 3 7 7 H 1.08003 * 120.00461 * 354.74261 * 6 5 4 8 8 C 1.37885 * 120.00196 * 174.73918 * 6 5 4 9 9 N 1.31509 * 119.99462 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00184 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47597 * 59.99920 * 10 8 6 12 12 H 1.48499 * 109.47275 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47220 * 299.99874 * 10 8 6 14 14 C 1.46900 * 111.00053 * 64.22819 * 4 3 2 15 15 C 1.50695 * 109.47145 * 66.04733 * 14 4 3 16 16 N 1.30251 * 125.62082 * 90.00194 * 15 14 4 17 17 C 1.34480 * 108.70407 * 179.97438 * 16 15 14 18 18 C 1.50699 * 126.16418 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.47112 * 255.01776 * 18 17 16 20 20 C 1.53008 * 109.46809 * 135.02197 * 18 17 16 21 21 C 1.52990 * 109.47616 * 15.02089 * 18 17 16 22 22 C 1.34330 * 107.66390 * 0.25844 * 17 16 15 23 23 O 1.33967 * 125.62161 * 269.96197 * 15 14 4 24 24 H 1.08002 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00058 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99769 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47595 * 4.14584 * 3 2 1 28 28 H 1.08997 * 109.47828 * 244.14311 * 3 2 1 29 29 H 1.09007 * 109.47043 * 48.16015 * 5 4 3 30 30 H 1.09001 * 109.47161 * 168.16277 * 5 4 3 31 31 H 0.97007 * 119.99759 * 180.02562 * 9 8 6 32 32 H 1.09007 * 109.46977 * 306.04607 * 14 4 3 33 33 H 1.09000 * 109.47050 * 186.04861 * 14 4 3 34 34 H 1.09000 * 109.46901 * 300.00347 * 19 18 17 35 35 H 1.09000 * 109.47018 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46743 * 60.00381 * 19 18 17 37 37 H 1.09002 * 109.46729 * 179.97438 * 20 18 17 38 38 H 1.08996 * 109.47240 * 299.99766 * 20 18 17 39 39 H 1.08999 * 109.47057 * 59.99864 * 20 18 17 40 40 H 1.09001 * 109.47120 * 300.00158 * 21 18 17 41 41 H 1.09012 * 109.47209 * 59.99790 * 21 18 17 42 42 H 1.09000 * 109.47327 * 179.97438 * 21 18 17 43 43 H 1.07999 * 126.43924 * 179.73742 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9815 1.3404 1.1463 5 6 2.2477 1.2140 2.4126 6 6 1.4883 2.4873 2.6824 7 1 1.6112 3.3383 2.0287 8 6 0.6363 2.5661 3.7636 9 7 0.4869 1.5301 4.5598 10 14 -0.3056 4.1442 4.0976 11 1 -1.1728 4.4589 2.9340 12 1 -1.1460 3.9721 5.3097 13 1 0.6538 5.2568 4.3150 14 6 4.0112 0.2994 1.0284 15 6 4.8988 0.6021 -0.1512 16 7 5.9867 1.3176 -0.1182 17 6 6.5079 1.3674 -1.3569 18 6 7.7660 2.0903 -1.7639 19 6 7.3980 3.3679 -2.5209 20 6 8.6043 1.1849 -2.6688 21 6 8.5732 2.4517 -0.5155 22 6 5.7020 0.6611 -2.1669 23 8 4.6994 0.1791 -1.4066 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3575 2.1323 0.0743 28 1 2.6333 1.3957 -0.9247 29 1 1.5479 0.3809 2.3454 30 1 2.9522 1.0322 3.2242 31 1 -0.1128 1.5854 5.3203 32 1 3.5334 -0.6697 0.8843 33 1 4.6111 0.2770 1.9382 34 1 6.8229 3.1104 -3.4104 35 1 8.3080 3.8905 -2.8157 36 1 6.8008 4.0129 -1.8763 37 1 9.5141 1.7079 -2.9635 38 1 8.8665 0.2747 -2.1296 39 1 8.0292 0.9274 -3.5582 40 1 7.9760 3.0967 0.1291 41 1 8.8354 1.5414 0.0238 42 1 9.4834 2.9741 -0.8100 43 1 5.8344 0.5063 -3.2275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894585526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:58 Heat of formation + Delta-G solvation = 36.602462 kcal Electronic energy + Delta-G solvation = -22016.153936 eV Core-core repulsion = 18870.529980 eV Total energy + Delta-G solvation = -3145.623956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.10033 -37.60541 -37.18673 -33.88644 -32.82728 -32.32348 -30.01312 -27.76662 -27.35906 -27.04129 -26.26206 -24.03315 -22.86501 -21.29638 -20.78689 -19.41311 -18.65308 -16.89482 -16.48700 -16.20826 -15.31277 -15.01728 -14.61488 -14.30149 -14.19521 -14.09639 -13.99143 -13.68199 -13.32268 -12.49685 -12.39153 -12.18215 -12.11537 -11.73392 -11.64394 -11.28625 -11.22412 -11.18542 -10.98076 -10.95649 -10.78212 -10.75391 -10.49934 -10.48428 -10.12382 -9.97648 -9.33347 -8.76967 -8.51863 -8.40275 -7.37797 -6.01521 -4.02297 1.70515 2.84123 2.94491 3.05099 3.34748 3.38780 3.42247 4.12522 4.44330 4.63504 4.84226 4.91014 5.03370 5.18565 5.20103 5.34293 5.45166 5.49720 5.54263 5.61657 5.65480 5.77042 5.83834 5.84547 5.85148 5.91067 5.97144 6.04813 6.16035 6.16209 6.23700 6.39785 6.41849 6.58997 6.61867 7.11197 7.16691 7.27507 7.38611 7.77412 7.98105 8.09942 8.12424 8.47616 9.04290 9.61253 11.09038 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.004249 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.644274 B = 6588.870553 C = 7237.973364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.182 4.182 3 C 0.088 3.912 4 N -0.521 5.521 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.142 3.858 15 C 0.221 3.779 16 N -0.467 5.467 17 C 0.000 4.000 18 C 0.013 3.987 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.093 4.093 23 O -0.204 6.204 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.011 0.989 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.797 -2.706 -14.567 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C -0.040 4.040 4 N -0.245 5.245 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.013 3.987 15 C 0.013 3.987 16 N -0.196 5.196 17 C -0.120 4.120 18 C 0.012 3.988 19 C -0.196 4.196 20 C -0.197 4.197 21 C -0.188 4.188 22 C -0.163 4.163 23 O -0.090 6.090 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 12.145 -2.043 -13.826 18.516 hybrid contribution -1.269 -0.369 -0.428 1.389 sum 10.876 -2.412 -14.254 18.091 Atomic orbital electron populations 1.23707 0.95955 1.01237 1.00279 1.23472 0.96757 0.99530 1.00440 1.21286 0.94728 0.94826 0.93127 1.62449 1.13743 1.43335 1.05001 1.19823 0.92252 0.97658 0.83451 1.21035 1.23804 0.98437 1.10920 0.91990 1.24938 0.96864 0.96481 0.96070 1.69941 1.37931 1.29696 1.16182 0.86584 0.79779 0.83688 0.77501 1.20325 1.21395 1.20173 1.20528 0.92652 0.95183 0.90327 1.26505 0.94242 0.93744 0.84231 1.70366 1.08868 1.17568 1.22779 1.21613 0.99232 1.01854 0.89334 1.18897 0.89698 0.94089 0.96131 1.21892 1.01524 0.96349 0.99812 1.21916 0.99484 0.99441 0.98826 1.21704 0.98738 1.01926 0.96401 1.24509 0.90109 1.03758 0.97961 1.84479 1.44180 1.59852 1.20485 0.88405 0.89542 0.88568 0.89375 0.92351 0.97094 0.95440 0.92898 0.92619 0.87159 0.92699 0.92060 0.92044 0.91890 0.92396 0.92652 0.91496 0.92563 0.92936 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 14.32 29.01 0.42 -2.64 16 2 C -0.18 -3.31 7.42 -36.03 -0.27 -3.58 16 3 C 0.09 1.73 5.49 -4.98 -0.03 1.71 16 4 N -0.52 -11.17 4.65 -238.96 -1.11 -12.28 16 5 C 0.19 4.85 4.58 -4.97 -0.02 4.83 16 6 C -0.50 -13.92 8.53 -34.44 -0.29 -14.21 16 7 H 0.06 1.73 7.66 -52.48 -0.40 1.32 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 10 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.14 2.60 5.43 -4.98 -0.03 2.58 16 15 C 0.22 3.87 6.92 -12.95 -0.09 3.78 16 16 N -0.47 -8.25 10.67 -7.36 -0.08 -8.33 16 17 C 0.00 0.00 5.53 -82.81 -0.46 -0.46 16 18 C 0.01 0.14 0.95 -155.66 -0.15 -0.01 16 19 C -0.14 -1.41 8.46 37.16 0.31 -1.09 16 20 C -0.14 -1.20 8.19 37.16 0.30 -0.90 16 21 C -0.13 -1.53 8.05 37.15 0.30 -1.23 16 22 C -0.09 -1.23 11.45 29.35 0.34 -0.90 16 23 O -0.20 -3.26 10.04 5.39 0.05 -3.21 16 24 H 0.10 1.76 7.84 -52.49 -0.41 1.35 16 25 H 0.09 1.35 8.06 -52.48 -0.42 0.93 16 26 H 0.10 1.64 6.80 -52.49 -0.36 1.28 16 27 H 0.09 1.87 7.04 -51.93 -0.37 1.50 16 28 H 0.06 1.09 6.59 -51.93 -0.34 0.74 16 29 H 0.01 0.30 6.71 -51.93 -0.35 -0.05 16 30 H 0.03 0.74 7.81 -51.93 -0.41 0.33 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.06 0.94 6.34 -51.93 -0.33 0.61 16 33 H 0.11 1.99 7.86 -51.93 -0.41 1.58 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.41 7.52 -51.93 -0.39 0.02 16 40 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 41 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.21 1.87 7.67 -52.49 -0.40 1.46 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -30.44 351.56 -6.98 -37.43 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.10 Total: 0.63 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 0.24 Total: -10.61 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.45 Total: -46.11 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.05 Total: -3.21 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.44 -6.98 -37.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894585526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.031 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds