Wall clock time and date at job start Tue Mar 31 2020 00:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 119.99966 * 2 1 4 4 N 1.46900 * 109.47092 * 124.14404 * 3 2 1 5 5 C 1.46905 * 111.00135 * 300.27539 * 4 3 2 6 6 C 1.50696 * 109.46987 * 288.16299 * 5 4 3 7 7 H 1.08003 * 120.00461 * 354.74261 * 6 5 4 8 8 C 1.37885 * 120.00196 * 174.73918 * 6 5 4 9 9 N 1.31509 * 119.99462 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00184 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47597 * 59.99920 * 10 8 6 12 12 H 1.48499 * 109.47275 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47220 * 299.99874 * 10 8 6 14 14 C 1.46900 * 111.00053 * 64.22819 * 4 3 2 15 15 C 1.50695 * 109.47145 * 66.04733 * 14 4 3 16 16 N 1.30251 * 125.62082 * 90.00194 * 15 14 4 17 17 C 1.34480 * 108.70407 * 179.97438 * 16 15 14 18 18 C 1.50699 * 126.16418 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.47112 * 255.01776 * 18 17 16 20 20 C 1.53008 * 109.46809 * 135.02197 * 18 17 16 21 21 C 1.52990 * 109.47616 * 15.02089 * 18 17 16 22 22 C 1.34330 * 107.66390 * 0.25844 * 17 16 15 23 23 O 1.33967 * 125.62161 * 269.96197 * 15 14 4 24 24 H 1.08002 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00058 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99769 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47595 * 4.14584 * 3 2 1 28 28 H 1.08997 * 109.47828 * 244.14311 * 3 2 1 29 29 H 1.09007 * 109.47043 * 48.16015 * 5 4 3 30 30 H 1.09001 * 109.47161 * 168.16277 * 5 4 3 31 31 H 0.97007 * 119.99759 * 180.02562 * 9 8 6 32 32 H 1.09007 * 109.46977 * 306.04607 * 14 4 3 33 33 H 1.09000 * 109.47050 * 186.04861 * 14 4 3 34 34 H 1.09000 * 109.46901 * 300.00347 * 19 18 17 35 35 H 1.09000 * 109.47018 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46743 * 60.00381 * 19 18 17 37 37 H 1.09002 * 109.46729 * 179.97438 * 20 18 17 38 38 H 1.08996 * 109.47240 * 299.99766 * 20 18 17 39 39 H 1.08999 * 109.47057 * 59.99864 * 20 18 17 40 40 H 1.09001 * 109.47120 * 300.00158 * 21 18 17 41 41 H 1.09012 * 109.47209 * 59.99790 * 21 18 17 42 42 H 1.09000 * 109.47327 * 179.97438 * 21 18 17 43 43 H 1.07999 * 126.43924 * 179.73742 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9815 1.3404 1.1463 5 6 2.2477 1.2140 2.4126 6 6 1.4883 2.4873 2.6824 7 1 1.6112 3.3383 2.0287 8 6 0.6363 2.5661 3.7636 9 7 0.4869 1.5301 4.5598 10 14 -0.3056 4.1442 4.0976 11 1 -1.1728 4.4589 2.9340 12 1 -1.1460 3.9721 5.3097 13 1 0.6538 5.2568 4.3150 14 6 4.0112 0.2994 1.0284 15 6 4.8988 0.6021 -0.1512 16 7 5.9867 1.3176 -0.1182 17 6 6.5079 1.3674 -1.3569 18 6 7.7660 2.0903 -1.7639 19 6 7.3980 3.3679 -2.5209 20 6 8.6043 1.1849 -2.6688 21 6 8.5732 2.4517 -0.5155 22 6 5.7020 0.6611 -2.1669 23 8 4.6994 0.1791 -1.4066 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3575 2.1323 0.0743 28 1 2.6333 1.3957 -0.9247 29 1 1.5479 0.3809 2.3454 30 1 2.9522 1.0322 3.2242 31 1 -0.1128 1.5854 5.3203 32 1 3.5334 -0.6697 0.8843 33 1 4.6111 0.2770 1.9382 34 1 6.8229 3.1104 -3.4104 35 1 8.3080 3.8905 -2.8157 36 1 6.8008 4.0129 -1.8763 37 1 9.5141 1.7079 -2.9635 38 1 8.8665 0.2747 -2.1296 39 1 8.0292 0.9274 -3.5582 40 1 7.9760 3.0967 0.1291 41 1 8.8354 1.5414 0.0238 42 1 9.4834 2.9741 -0.8100 43 1 5.8344 0.5063 -3.2275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894585526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:57 Heat of formation + Delta-G solvation = 16.259432 kcal Electronic energy + Delta-G solvation = -22017.036076 eV Core-core repulsion = 18870.529980 eV Total energy + Delta-G solvation = -3146.506096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.30227 -39.15847 -38.20669 -35.11370 -34.84090 -33.85997 -31.43431 -29.26430 -28.35626 -28.10964 -27.57416 -25.84103 -23.93616 -23.00418 -22.18345 -20.69442 -19.90391 -18.39761 -17.94386 -17.77449 -16.94724 -16.39053 -16.01383 -15.96907 -15.45765 -15.29742 -15.05180 -14.93125 -14.41518 -14.13431 -13.94922 -13.27056 -13.20302 -13.07349 -12.91244 -12.75994 -12.61191 -12.55116 -12.41339 -12.22671 -12.16819 -12.10358 -12.02310 -11.84755 -11.65173 -11.36309 -11.29558 -10.57892 -10.23385 -9.66651 -9.08967 -8.16481 -6.24952 0.51479 1.40991 1.42560 1.44274 1.51879 1.71884 1.85899 2.42590 2.99346 3.16606 3.39936 3.66124 3.90792 4.01942 4.05878 4.09463 4.25552 4.31819 4.38403 4.46790 4.53959 4.74679 4.79647 4.87357 4.90593 4.91370 4.98429 5.03003 5.04322 5.07127 5.08323 5.19193 5.20344 5.29535 5.44399 5.48616 5.50414 5.64925 5.69707 5.87049 6.05737 6.26023 6.50492 6.87884 6.89606 7.43205 8.93490 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.004249 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.644274 B = 6588.870553 C = 7237.973364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.191 4.191 3 C 0.096 3.904 4 N -0.534 5.534 5 C 0.210 3.790 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.929 5.929 10 Si 0.960 3.040 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.148 3.852 15 C 0.198 3.802 16 N -0.491 5.491 17 C -0.020 4.020 18 C 0.011 3.989 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.076 4.076 23 O -0.209 6.209 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.066 0.934 28 H 0.069 0.931 29 H -0.005 1.005 30 H 0.004 0.996 31 H 0.264 0.736 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.427 -2.561 -16.847 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.211 4.211 3 C -0.032 4.032 4 N -0.258 5.258 5 C 0.085 3.915 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.785 3.215 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.019 3.981 15 C -0.009 4.009 16 N -0.222 5.222 17 C -0.140 4.140 18 C 0.010 3.990 19 C -0.192 4.192 20 C -0.191 4.191 21 C -0.186 4.186 22 C -0.146 4.146 23 O -0.095 6.095 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.013 0.987 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 12.780 -1.905 -16.128 20.666 hybrid contribution -1.375 -0.412 0.211 1.451 sum 11.404 -2.317 -15.918 19.718 Atomic orbital electron populations 1.23881 0.95898 1.01995 0.99160 1.23453 0.97030 0.99215 1.01398 1.21159 0.94288 0.95048 0.92708 1.62271 1.14214 1.45266 1.04039 1.19423 0.91307 0.96127 0.84679 1.21299 1.24310 0.99068 1.11004 0.92765 1.25728 0.97700 0.99621 0.95751 1.70051 1.38632 1.31602 1.16645 0.85579 0.78516 0.79709 0.77674 1.19355 1.20743 1.19862 1.20368 0.91876 0.94854 0.90986 1.26048 0.94703 0.95452 0.84686 1.70333 1.09206 1.17591 1.25033 1.22215 1.00694 1.02707 0.88370 1.19080 0.88654 0.94906 0.96370 1.21878 1.02395 0.95475 0.99490 1.21892 1.00000 0.98632 0.98598 1.21679 0.99461 1.01017 0.96403 1.25387 0.88362 1.01616 0.99266 1.84463 1.45058 1.59915 1.20043 0.89264 0.87204 0.87193 0.91507 0.91274 0.98713 0.97835 0.92734 0.91268 0.87877 0.91395 0.89801 0.94697 0.89964 0.93127 0.90865 0.94381 0.93733 0.90420 0.73417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.91 14.32 67.78 0.97 -4.94 16 2 C -0.19 -6.88 7.42 25.64 0.19 -6.69 16 3 C 0.10 3.80 5.49 85.55 0.47 4.27 16 4 N -0.53 -23.51 4.65 -909.94 -4.23 -27.74 16 5 C 0.21 10.96 4.58 85.55 0.39 11.35 16 6 C -0.52 -29.34 8.53 25.60 0.22 -29.12 16 7 H 0.05 3.09 7.66 -2.91 -0.02 3.07 16 8 C 0.01 0.59 5.46 84.66 0.46 1.06 16 9 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 10 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 C 0.15 5.54 5.43 85.56 0.46 6.00 16 15 C 0.20 6.97 6.92 88.34 0.61 7.58 16 16 N -0.49 -17.51 10.67 -291.99 -3.11 -20.62 16 17 C -0.02 -0.55 5.53 41.26 0.23 -0.32 16 18 C 0.01 0.22 0.95 -52.93 -0.05 0.17 16 19 C -0.13 -2.44 8.46 71.98 0.61 -1.84 16 20 C -0.13 -1.86 8.19 71.98 0.59 -1.27 16 21 C -0.13 -2.92 8.05 71.98 0.58 -2.34 16 22 C -0.08 -1.84 11.45 66.93 0.77 -1.07 16 23 O -0.21 -6.40 10.04 -3.64 -0.04 -6.43 16 24 H 0.09 3.21 7.84 -2.91 -0.02 3.19 16 25 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 26 H 0.11 3.64 6.80 -2.91 -0.02 3.62 16 27 H 0.07 2.90 7.04 -2.39 -0.02 2.88 16 28 H 0.07 2.57 6.59 -2.39 -0.02 2.55 16 29 H 0.00 -0.27 6.71 -2.38 -0.02 -0.28 16 30 H 0.00 0.20 7.81 -2.39 -0.02 0.18 16 31 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 32 H 0.07 2.37 6.34 -2.38 -0.02 2.35 16 33 H 0.10 3.92 7.86 -2.39 -0.02 3.91 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.76 7.52 -2.39 -0.02 0.74 16 40 H 0.04 1.06 8.09 -2.39 -0.02 1.04 16 41 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.25 3.40 7.67 -2.91 -0.02 3.38 16 Total: -1.00 -66.87 351.56 2.40 -64.47 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.97 Total: 15.72 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 6.50 Total: -17.16 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -7.06 Total: -103.12 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.04 Total: -6.43 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.87 2.40 -64.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894585526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.732 kcal (2) G-P(sol) polarization free energy of solvation -66.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds