Wall clock time and date at job start Tue Mar 31 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00287 * 2 1 4 4 C 1.50700 * 109.47289 * 293.95631 * 3 2 1 5 5 C 1.38086 * 119.58393 * 95.01962 * 4 3 2 6 6 C 1.38786 * 119.28760 * 179.97438 * 5 4 3 7 7 C 1.38417 * 118.48613 * 359.74744 * 6 5 4 8 8 C 1.38875 * 119.11152 * 0.49878 * 7 6 5 9 9 O 1.35682 * 119.68493 * 179.77430 * 8 7 6 10 10 N 1.31935 * 119.58228 * 274.99962 * 4 3 2 11 11 C 1.46895 * 111.00060 * 123.95766 * 2 1 3 12 12 C 1.52996 * 109.47312 * 85.42698 * 11 2 1 13 13 C 1.52995 * 109.47282 * 300.35197 * 12 11 2 14 14 C 1.52996 * 109.47079 * 60.35476 * 12 11 2 15 15 C 1.53006 * 109.47353 * 180.34815 * 12 11 2 16 16 C 1.50694 * 109.47175 * 179.97438 * 15 12 11 17 17 H 1.08000 * 119.99957 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99776 * 180.02562 * 16 15 12 19 19 N 1.31521 * 119.99724 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00102 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46876 * 90.00271 * 20 18 16 22 22 H 1.48502 * 109.47002 * 209.99965 * 20 18 16 23 23 H 1.48500 * 109.47165 * 330.00237 * 20 18 16 24 24 H 1.08998 * 109.47275 * 67.52856 * 1 2 3 25 25 H 1.09002 * 109.47683 * 187.53241 * 1 2 3 26 26 H 1.09007 * 109.47283 * 307.53666 * 1 2 3 27 27 H 1.08995 * 109.47660 * 173.95321 * 3 2 1 28 28 H 1.08997 * 109.47089 * 53.95329 * 3 2 1 29 29 H 1.08004 * 120.36124 * 359.95406 * 5 4 3 30 30 H 1.08003 * 120.75568 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.44143 * 180.24534 * 7 6 5 32 32 H 0.96693 * 113.99591 * 269.71980 * 9 8 7 33 33 H 1.09003 * 109.46968 * 205.42917 * 11 2 1 34 34 H 1.09006 * 109.46991 * 325.42716 * 11 2 1 35 35 H 1.09001 * 109.46954 * 68.65183 * 13 12 11 36 36 H 1.09008 * 109.47156 * 188.65343 * 13 12 11 37 37 H 1.08998 * 109.47094 * 308.65328 * 13 12 11 38 38 H 1.09004 * 109.47816 * 59.99739 * 14 12 11 39 39 H 1.09001 * 109.47497 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.47014 * 299.99660 * 14 12 11 41 41 H 1.08999 * 109.47149 * 300.00654 * 15 12 11 42 42 H 1.09004 * 109.46484 * 60.00369 * 15 12 11 43 43 H 0.97006 * 119.99584 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 6 0.5030 2.8321 -1.3680 6 6 0.1789 3.4520 -2.5667 7 6 1.0138 3.2630 -3.6545 8 6 2.1351 2.4559 -3.5135 9 8 2.9589 2.2591 -4.5734 10 7 2.4107 1.8817 -2.3541 11 6 1.9954 -0.7660 1.1375 12 6 2.0708 -2.2476 0.7635 13 6 0.6733 -2.7540 0.4014 14 6 3.0038 -2.4239 -0.4362 15 6 2.6110 -3.0467 1.9512 16 6 2.6847 -4.5061 1.5830 17 1 2.3774 -4.8312 0.6000 18 6 3.1444 -5.4263 2.5011 19 7 3.2091 -6.7000 2.1795 20 14 3.6751 -4.8641 4.2016 21 1 2.5095 -4.9000 5.1210 22 1 4.7368 -5.7680 4.7127 23 1 4.2010 -3.4776 4.1228 24 1 -0.3634 0.3928 -0.9496 25 1 -0.3634 -1.0188 0.1347 26 1 -0.3634 0.6262 0.8149 27 1 3.0797 1.3444 0.1082 28 1 1.5612 1.9273 0.8309 29 1 -0.1252 2.9619 -0.4992 30 1 -0.7021 4.0713 -2.6477 31 1 0.7939 3.7337 -4.6014 32 1 2.7236 1.4954 -5.1179 33 1 2.9921 -0.4037 1.3894 34 1 1.3356 -0.6412 1.9961 35 1 0.3515 -2.2953 -0.5336 36 1 0.6983 -3.8376 0.2847 37 1 -0.0257 -2.4901 1.1950 38 1 3.9996 -2.0632 -0.1783 39 1 3.0580 -3.4795 -0.7024 40 1 2.6191 -1.8547 -1.2824 41 1 3.6067 -2.6859 2.2092 42 1 1.9463 -2.9211 2.8059 43 1 3.5329 -7.3474 2.8254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897391897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:15 Heat of formation + Delta-G solvation = 2.006481 kcal Electronic energy + Delta-G solvation = -21957.225778 eV Core-core repulsion = 18810.101628 eV Total energy + Delta-G solvation = -3147.124151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68715 -38.48996 -37.24085 -35.08847 -32.77104 -32.16837 -30.77450 -28.11957 -27.65044 -26.59502 -25.93356 -23.65390 -23.28758 -22.22889 -20.99846 -18.78078 -17.88308 -16.79465 -16.73151 -16.50818 -15.79781 -15.47064 -15.09904 -14.54278 -14.08313 -13.75652 -13.38561 -13.21776 -12.95412 -12.86428 -12.65055 -12.37700 -12.17891 -12.05619 -11.85792 -11.57408 -11.41209 -10.90659 -10.79225 -10.49388 -10.43194 -10.31198 -10.07916 -9.75058 -9.61029 -9.52341 -9.18061 -9.01009 -8.88937 -8.46063 -8.03120 -5.96443 -3.92136 0.78225 1.03124 3.21859 3.34247 3.42192 3.45822 3.62332 4.18134 4.39934 4.51397 4.56822 4.81524 4.84857 5.14965 5.23710 5.32018 5.36602 5.46560 5.49620 5.60330 5.71777 5.79151 5.86581 5.92701 5.98096 6.08938 6.17516 6.28009 6.29503 6.50863 6.69842 6.75551 6.88824 7.13985 7.20491 7.22340 7.26073 7.30302 7.37726 7.43918 7.55554 7.85057 7.89763 8.64262 9.10081 9.66814 11.16738 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031314 B = 0.003649 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.951170 B = 7671.627858 C = 7956.621441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.523 5.523 3 C 0.099 3.901 4 C 0.173 3.827 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.194 4.194 8 C 0.312 3.688 9 O -0.485 6.485 10 N -0.481 5.481 11 C 0.064 3.936 12 C -0.041 4.041 13 C -0.134 4.134 14 C -0.116 4.116 15 C -0.005 4.005 16 C -0.505 4.505 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.875 3.125 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.267 1.267 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.020 0.980 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.014 0.986 42 H 0.007 0.993 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 20.936 -8.778 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.247 5.247 3 C -0.029 4.029 4 C 0.035 3.965 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.216 4.216 8 C 0.133 3.867 9 O -0.292 6.292 10 N -0.200 5.200 11 C -0.063 4.063 12 C -0.042 4.042 13 C -0.191 4.191 14 C -0.174 4.174 15 C -0.043 4.043 16 C -0.543 4.543 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.703 3.297 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.191 1.191 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.038 0.962 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.259 0.741 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.025 0.975 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.304 20.515 -8.919 23.241 hybrid contribution -0.886 0.723 1.390 1.800 sum -7.190 21.237 -7.529 23.652 Atomic orbital electron populations 1.22988 0.87917 1.03947 0.99793 1.61862 1.07471 1.10513 1.44807 1.21091 1.01816 0.89422 0.90612 1.20892 0.89773 0.92420 0.93461 1.22009 0.98960 0.99843 0.99235 1.21447 0.98470 0.96798 0.91970 1.22070 0.95238 1.03243 1.01004 1.19202 0.87436 0.93246 0.86835 1.84754 1.54683 1.52382 1.37394 1.66995 1.31818 1.21821 0.99385 1.22397 0.98837 0.95367 0.89744 1.20342 0.95765 0.90765 0.97308 1.22003 0.95724 1.02520 0.98825 1.21591 0.97567 1.01409 0.96791 1.19641 0.95353 0.96305 0.93007 1.21142 1.42318 0.89524 1.01282 0.90391 1.25020 0.95486 0.94835 0.98293 1.69918 1.47991 1.01305 1.35409 0.86851 0.78560 0.78965 0.85293 1.20558 1.21600 1.19125 0.92424 0.88617 0.96198 0.88868 0.93274 0.84710 0.84471 0.84448 0.74062 0.91565 0.94658 0.93447 0.91258 0.94451 0.94470 0.92313 0.93445 0.96770 0.97460 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 8.26 60.06 0.50 0.51 16 2 N -0.52 -7.48 3.77 -244.38 -0.92 -8.40 16 3 C 0.10 1.24 5.22 -4.98 -0.03 1.21 16 4 C 0.17 2.14 5.64 -82.60 -0.47 1.67 16 5 C -0.18 -1.73 8.56 -39.43 -0.34 -2.07 16 6 C -0.06 -0.50 10.17 -39.31 -0.40 -0.90 16 7 C -0.19 -1.78 10.04 -39.28 -0.39 -2.18 16 8 C 0.31 3.72 7.74 -17.12 -0.13 3.59 16 9 O -0.48 -5.19 13.56 -18.75 -0.25 -5.44 16 10 N -0.48 -6.79 10.30 -9.55 -0.10 -6.89 16 11 C 0.06 1.03 4.23 -3.83 -0.02 1.02 16 12 C -0.04 -0.80 0.60 -154.51 -0.09 -0.90 16 13 C -0.13 -2.49 6.67 37.16 0.25 -2.24 16 14 C -0.12 -2.32 8.06 37.16 0.30 -2.02 16 15 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 16 C -0.50 -13.99 8.09 -34.44 -0.28 -14.27 16 17 H 0.08 2.32 5.96 -52.49 -0.31 2.00 16 18 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 19 N -0.91 -27.93 13.96 55.43 0.77 -27.16 16 20 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 24 H 0.06 0.68 6.89 -51.93 -0.36 0.33 16 25 H 0.10 1.29 3.89 -51.93 -0.20 1.09 16 26 H 0.02 0.22 8.03 -51.93 -0.42 -0.20 16 27 H 0.09 1.24 7.79 -51.93 -0.40 0.84 16 28 H 0.05 0.52 7.94 -51.93 -0.41 0.11 16 29 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.40 2.43 9.06 45.56 0.41 2.85 16 33 H 0.07 1.07 7.57 -51.93 -0.39 0.67 16 34 H 0.04 0.56 7.85 -51.93 -0.41 0.15 16 35 H 0.05 0.80 6.21 -51.93 -0.32 0.47 16 36 H 0.07 1.48 6.38 -51.92 -0.33 1.15 16 37 H 0.04 0.65 7.47 -51.93 -0.39 0.26 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 40 H 0.05 0.89 7.61 -51.93 -0.40 0.50 16 41 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 42 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -32.86 336.36 -7.28 -40.14 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.90 Total: 0.53 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.28 Total: -15.03 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.25 Total: -42.44 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.25 Total: -5.44 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.86 -7.28 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897391897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.150 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds