Wall clock time and date at job start Tue Mar 31 2020 00:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00287 * 2 1 4 4 C 1.50700 * 109.47289 * 293.95631 * 3 2 1 5 5 C 1.38086 * 119.58393 * 95.01962 * 4 3 2 6 6 C 1.38786 * 119.28760 * 179.97438 * 5 4 3 7 7 C 1.38417 * 118.48613 * 359.74744 * 6 5 4 8 8 C 1.38875 * 119.11152 * 0.49878 * 7 6 5 9 9 O 1.35682 * 119.68493 * 179.77430 * 8 7 6 10 10 N 1.31935 * 119.58228 * 274.99962 * 4 3 2 11 11 C 1.46895 * 111.00060 * 123.95766 * 2 1 3 12 12 C 1.52996 * 109.47312 * 85.42698 * 11 2 1 13 13 C 1.52995 * 109.47282 * 300.35197 * 12 11 2 14 14 C 1.52996 * 109.47079 * 60.35476 * 12 11 2 15 15 C 1.53006 * 109.47353 * 180.34815 * 12 11 2 16 16 C 1.50694 * 109.47175 * 179.97438 * 15 12 11 17 17 H 1.08000 * 119.99957 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99776 * 180.02562 * 16 15 12 19 19 N 1.31521 * 119.99724 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00102 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46876 * 90.00271 * 20 18 16 22 22 H 1.48502 * 109.47002 * 209.99965 * 20 18 16 23 23 H 1.48500 * 109.47165 * 330.00237 * 20 18 16 24 24 H 1.08998 * 109.47275 * 67.52856 * 1 2 3 25 25 H 1.09002 * 109.47683 * 187.53241 * 1 2 3 26 26 H 1.09007 * 109.47283 * 307.53666 * 1 2 3 27 27 H 1.08995 * 109.47660 * 173.95321 * 3 2 1 28 28 H 1.08997 * 109.47089 * 53.95329 * 3 2 1 29 29 H 1.08004 * 120.36124 * 359.95406 * 5 4 3 30 30 H 1.08003 * 120.75568 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.44143 * 180.24534 * 7 6 5 32 32 H 0.96693 * 113.99591 * 269.71980 * 9 8 7 33 33 H 1.09003 * 109.46968 * 205.42917 * 11 2 1 34 34 H 1.09006 * 109.46991 * 325.42716 * 11 2 1 35 35 H 1.09001 * 109.46954 * 68.65183 * 13 12 11 36 36 H 1.09008 * 109.47156 * 188.65343 * 13 12 11 37 37 H 1.08998 * 109.47094 * 308.65328 * 13 12 11 38 38 H 1.09004 * 109.47816 * 59.99739 * 14 12 11 39 39 H 1.09001 * 109.47497 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.47014 * 299.99660 * 14 12 11 41 41 H 1.08999 * 109.47149 * 300.00654 * 15 12 11 42 42 H 1.09004 * 109.46484 * 60.00369 * 15 12 11 43 43 H 0.97006 * 119.99584 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 6 0.5030 2.8321 -1.3680 6 6 0.1789 3.4520 -2.5667 7 6 1.0138 3.2630 -3.6545 8 6 2.1351 2.4559 -3.5135 9 8 2.9589 2.2591 -4.5734 10 7 2.4107 1.8817 -2.3541 11 6 1.9954 -0.7660 1.1375 12 6 2.0708 -2.2476 0.7635 13 6 0.6733 -2.7540 0.4014 14 6 3.0038 -2.4239 -0.4362 15 6 2.6110 -3.0467 1.9512 16 6 2.6847 -4.5061 1.5830 17 1 2.3774 -4.8312 0.6000 18 6 3.1444 -5.4263 2.5011 19 7 3.2091 -6.7000 2.1795 20 14 3.6751 -4.8641 4.2016 21 1 2.5095 -4.9000 5.1210 22 1 4.7368 -5.7680 4.7127 23 1 4.2010 -3.4776 4.1228 24 1 -0.3634 0.3928 -0.9496 25 1 -0.3634 -1.0188 0.1347 26 1 -0.3634 0.6262 0.8149 27 1 3.0797 1.3444 0.1082 28 1 1.5612 1.9273 0.8309 29 1 -0.1252 2.9619 -0.4992 30 1 -0.7021 4.0713 -2.6477 31 1 0.7939 3.7337 -4.6014 32 1 2.7236 1.4954 -5.1179 33 1 2.9921 -0.4037 1.3894 34 1 1.3356 -0.6412 1.9961 35 1 0.3515 -2.2953 -0.5336 36 1 0.6983 -3.8376 0.2847 37 1 -0.0257 -2.4901 1.1950 38 1 3.9996 -2.0632 -0.1783 39 1 3.0580 -3.4795 -0.7024 40 1 2.6191 -1.8547 -1.2824 41 1 3.6067 -2.6859 2.2092 42 1 1.9463 -2.9211 2.8059 43 1 3.5329 -7.3474 2.8254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897391897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:14 Heat of formation + Delta-G solvation = -23.173578 kcal Electronic energy + Delta-G solvation = -21958.317668 eV Core-core repulsion = 18810.101628 eV Total energy + Delta-G solvation = -3148.216040 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46298 -39.73813 -38.12694 -36.44270 -34.32020 -33.45542 -31.69980 -29.66300 -29.15377 -27.75003 -27.39330 -24.97489 -24.16874 -23.58684 -22.07490 -19.61824 -19.42402 -18.83993 -17.60391 -17.18607 -16.72143 -16.57218 -16.24724 -16.14168 -15.48937 -15.00705 -14.73021 -14.46355 -14.17403 -14.12582 -13.89317 -13.70950 -13.54383 -13.06045 -13.00293 -12.79686 -12.62416 -12.48495 -12.30622 -12.22254 -12.12942 -11.84981 -11.70470 -11.26152 -10.91327 -10.88352 -10.73072 -10.67579 -10.29261 -9.78903 -9.09244 -8.19707 -6.19845 0.04439 0.33103 1.36915 1.39498 1.50587 2.41514 2.48003 2.85572 3.15339 3.20710 3.62599 3.89037 4.08238 4.14219 4.19651 4.21542 4.35844 4.45237 4.45909 4.58002 4.66529 4.68480 4.79053 4.82815 4.91169 4.97748 5.04443 5.09945 5.12063 5.15036 5.22162 5.23319 5.41835 5.47595 5.56161 5.63751 5.65360 5.77995 5.85787 6.16324 6.24325 6.45344 6.66008 6.87477 7.08509 7.42324 8.96739 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031314 B = 0.003649 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.951170 B = 7671.627858 C = 7956.621441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.537 5.537 3 C 0.102 3.898 4 C 0.151 3.849 5 C -0.175 4.175 6 C -0.054 4.054 7 C -0.188 4.188 8 C 0.287 3.713 9 O -0.499 6.499 10 N -0.526 5.526 11 C 0.075 3.925 12 C -0.042 4.042 13 C -0.123 4.123 14 C -0.104 4.104 15 C -0.002 4.002 16 C -0.502 4.502 17 H 0.041 0.959 18 C -0.001 4.001 19 N -0.956 5.956 20 Si 0.942 3.058 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.249 1.249 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.159 0.841 30 H 0.175 0.825 31 H 0.162 0.838 32 H 0.416 0.584 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.052 0.948 38 H 0.033 0.967 39 H 0.025 0.975 40 H 0.057 0.943 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 24.287 -7.997 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.261 5.261 3 C -0.026 4.026 4 C 0.013 3.987 5 C -0.195 4.195 6 C -0.080 4.080 7 C -0.210 4.210 8 C 0.109 3.891 9 O -0.309 6.309 10 N -0.246 5.246 11 C -0.053 4.053 12 C -0.043 4.043 13 C -0.180 4.180 14 C -0.162 4.162 15 C -0.040 4.040 16 C -0.540 4.540 17 H 0.060 0.940 18 C -0.196 4.196 19 N -0.599 5.599 20 Si 0.767 3.233 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.172 1.172 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.177 0.823 30 H 0.193 0.807 31 H 0.179 0.821 32 H 0.276 0.724 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.941 23.886 -8.156 26.460 hybrid contribution -0.414 -0.309 0.988 1.115 sum -8.356 23.577 -7.169 26.020 Atomic orbital electron populations 1.22938 0.86660 1.03648 1.01034 1.61702 1.08683 1.11861 1.43879 1.21063 1.00950 0.88584 0.91974 1.20938 0.91006 0.93871 0.92925 1.22263 0.97958 0.98670 1.00651 1.21907 0.99077 0.96120 0.90874 1.22356 0.94101 1.01992 1.02505 1.19533 0.88657 0.94367 0.86557 1.84710 1.55287 1.53411 1.37478 1.66873 1.33469 1.23611 1.00633 1.22110 0.99496 0.92879 0.90780 1.20287 0.95625 0.93085 0.95259 1.21899 0.95718 0.99956 1.00395 1.21455 0.97811 0.99203 0.97685 1.19592 0.95610 0.93941 0.94890 1.21431 1.40863 0.92039 0.99715 0.94033 1.25946 0.95952 0.94802 1.02910 1.70080 1.49903 1.02796 1.37082 0.85773 0.78411 0.79199 0.79926 1.19346 1.21633 1.17215 0.91675 0.89839 0.94110 0.90526 0.90892 0.82317 0.80726 0.82051 0.72377 0.91569 0.93469 0.91599 0.95088 0.92903 0.94797 0.95621 0.92374 0.96966 0.96647 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.10 8.26 127.69 1.06 1.16 16 2 N -0.54 -14.21 3.77 -927.07 -3.49 -17.70 16 3 C 0.10 2.35 5.22 85.56 0.45 2.80 16 4 C 0.15 3.43 5.64 42.51 0.24 3.67 16 5 C -0.18 -2.74 8.56 22.36 0.19 -2.55 16 6 C -0.05 -0.68 10.17 22.44 0.23 -0.45 16 7 C -0.19 -2.94 10.04 22.47 0.23 -2.72 16 8 C 0.29 6.55 7.74 84.78 0.66 7.21 16 9 O -0.50 -10.49 13.56 -90.00 -1.22 -11.71 16 10 N -0.53 -14.46 10.30 -296.97 -3.06 -17.52 16 11 C 0.07 2.28 4.23 86.30 0.37 2.65 16 12 C -0.04 -1.61 0.60 -52.18 -0.03 -1.65 16 13 C -0.12 -4.53 6.67 71.98 0.48 -4.05 16 14 C -0.10 -4.24 8.06 71.98 0.58 -3.66 16 15 C 0.00 -0.12 3.11 29.85 0.09 -0.02 16 16 C -0.50 -28.66 8.09 25.60 0.21 -28.46 16 17 H 0.04 2.62 5.96 -2.91 -0.02 2.60 16 18 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 19 N -0.96 -60.93 13.96 21.45 0.30 -60.63 16 20 Si 0.94 44.99 27.47 68.60 1.88 46.87 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 24 H 0.06 1.34 6.89 -2.39 -0.02 1.32 16 25 H 0.08 2.03 3.89 -2.39 -0.01 2.02 16 26 H 0.04 0.73 8.03 -2.38 -0.02 0.71 16 27 H 0.08 1.98 7.79 -2.39 -0.02 1.96 16 28 H 0.07 1.30 7.94 -2.39 -0.02 1.28 16 29 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 31 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.42 5.00 9.06 -74.06 -0.67 4.33 16 33 H 0.07 2.01 7.57 -2.39 -0.02 1.99 16 34 H 0.05 1.33 7.85 -2.38 -0.02 1.31 16 35 H 0.07 2.16 6.21 -2.39 -0.01 2.15 16 36 H 0.03 1.35 6.38 -2.38 -0.02 1.34 16 37 H 0.05 1.76 7.47 -2.39 -0.02 1.74 16 38 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.02 1.17 6.62 -2.39 -0.02 1.16 16 40 H 0.06 2.21 7.61 -2.39 -0.02 2.19 16 41 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 42 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16 43 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -73.64 336.36 -0.11 -73.74 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.28 Total: 12.60 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 5.20 Total: -25.66 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -6.25 Total: -95.85 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -1.22 Total: -11.71 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -73.64 -0.11 -73.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897391897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.570 kcal (2) G-P(sol) polarization free energy of solvation -73.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds