Wall clock time and date at job start Tue Mar 31 2020 00:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30175 * 126.80809 * 2 1 4 4 O 1.20913 * 111.60728 * 180.25338 * 3 2 1 5 5 C 1.34043 * 111.56716 * 359.74481 * 4 3 2 6 6 C 1.50700 * 126.77699 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44609 * 0.02562 * 5 4 3 8 8 C 1.50700 * 128.00506 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47204 * 14.99670 * 8 7 5 10 10 C 1.53001 * 109.46857 * 254.99845 * 8 7 5 11 11 N 1.46900 * 109.47115 * 134.99930 * 8 7 5 12 12 C 1.46891 * 111.00097 * 204.99559 * 11 8 7 13 13 H 1.08998 * 110.43494 * 323.91749 * 12 11 8 14 14 C 1.54274 * 110.48375 * 86.45454 * 12 11 8 15 15 C 1.53874 * 106.59583 * 142.42106 * 14 12 11 16 16 C 1.54261 * 106.60056 * 0.02562 * 15 14 12 17 17 H 1.08999 * 110.48869 * 95.20527 * 16 15 14 18 18 C 1.50702 * 110.48402 * 217.71282 * 16 15 14 19 19 H 1.08002 * 120.00299 * 118.55010 * 18 16 15 20 20 C 1.37884 * 119.99942 * 298.26568 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.54885 * 104.19644 * 336.38879 * 16 15 14 27 27 H 1.09001 * 109.47063 * 270.17038 * 1 2 3 28 28 H 1.09005 * 109.46850 * 30.16383 * 1 2 3 29 29 H 1.08998 * 109.47743 * 150.16454 * 1 2 3 30 30 H 1.08996 * 109.47724 * 270.00112 * 6 5 4 31 31 H 1.08999 * 109.47004 * 30.00738 * 6 5 4 32 32 H 1.08998 * 109.46988 * 149.99868 * 6 5 4 33 33 H 1.08995 * 109.47466 * 60.00180 * 10 8 7 34 34 H 1.09000 * 109.47210 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47071 * 299.99906 * 10 8 7 36 36 H 1.00904 * 111.00093 * 81.03850 * 11 8 7 37 37 H 1.08998 * 110.03110 * 23.13542 * 14 12 11 38 38 H 1.09001 * 110.02903 * 261.70607 * 14 12 11 39 39 H 1.09004 * 110.03230 * 240.71337 * 15 14 12 40 40 H 1.09000 * 110.03197 * 119.28620 * 15 14 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 42 42 H 1.09002 * 110.75604 * 156.26006 * 26 16 15 43 43 H 1.09004 * 110.75942 * 279.62814 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7252 -0.0050 5 6 3.6024 -0.6069 -0.0035 6 6 4.9020 -1.3698 -0.0089 7 6 2.3538 -1.1321 0.0027 8 6 1.9589 -2.5865 0.0062 9 1 2.8228 -3.1969 0.2690 10 6 1.4588 -2.9824 -1.3845 11 7 0.8899 -2.8012 0.9905 12 6 0.8783 -4.1930 1.4600 13 1 1.1373 -4.8711 0.6468 14 6 1.8523 -4.3719 2.6430 15 6 1.1824 -5.3548 3.6190 16 6 -0.1749 -5.7395 2.9949 17 1 -0.0863 -6.6686 2.4319 18 6 -1.2288 -5.8708 4.0642 19 1 -2.0956 -5.2266 4.0501 20 6 -1.0893 -6.8172 5.0571 21 7 -0.0338 -7.6015 5.0743 22 14 -2.3993 -6.9850 6.3780 23 1 -3.7007 -7.3184 5.7451 24 1 -2.0157 -8.0661 7.3211 25 1 -2.5229 -5.7037 7.1185 26 6 -0.5064 -4.5586 2.0492 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8886 -0.5164 29 1 -0.3634 -0.8914 -0.5112 30 1 5.2102 -1.5555 -1.0378 31 1 5.6685 -0.7853 0.5001 32 1 4.7675 -2.3203 0.5073 33 1 2.2519 -2.8231 -2.1149 34 1 1.1727 -4.0342 -1.3820 35 1 0.5948 -2.3719 -1.6473 36 1 -0.0082 -2.5398 0.6119 37 1 2.0218 -3.4142 3.1350 38 1 2.7978 -4.7830 2.2892 39 1 1.0268 -4.8742 4.5849 40 1 1.8028 -6.2429 3.7391 41 1 0.0646 -8.2671 5.7731 42 1 -1.1903 -4.8747 1.2615 43 1 -0.9212 -3.7201 2.6088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926512282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:13 Heat of formation + Delta-G solvation = 35.682263 kcal Electronic energy + Delta-G solvation = -22164.627328 eV Core-core repulsion = 19018.963469 eV Total energy + Delta-G solvation = -3145.663859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.85339 -38.32921 -36.19513 -33.94815 -33.32218 -32.09567 -29.58015 -28.68771 -28.06918 -27.65082 -26.12661 -23.98730 -23.38294 -20.92099 -20.20796 -19.36710 -18.81623 -17.60717 -16.79957 -16.35399 -15.35095 -15.15329 -14.65959 -14.41514 -14.03418 -13.66775 -13.52143 -13.35826 -13.18404 -12.88317 -12.81963 -12.50570 -12.36580 -12.28837 -12.04634 -11.59272 -11.47796 -11.02373 -10.80287 -10.75791 -10.54214 -10.37326 -10.11550 -9.94803 -9.74893 -9.47997 -9.19953 -9.01307 -8.69206 -8.34568 -8.13013 -5.97858 -4.00322 1.49538 2.28168 3.13654 3.33817 3.38487 3.41161 4.11657 4.43134 4.46994 4.52541 4.84625 4.89919 5.12813 5.16887 5.23497 5.28678 5.34147 5.41146 5.52631 5.54729 5.60200 5.62836 5.71320 5.80187 5.85258 5.92882 5.94276 6.02282 6.23910 6.33247 6.53856 6.65669 6.79532 6.86091 7.00282 7.18852 7.38212 7.53371 7.64689 7.77831 7.95137 8.05657 8.34049 8.49482 9.02051 9.63456 11.11743 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.003771 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.524939 B = 7423.679610 C = 7687.393655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.038 3.962 3 N -0.375 5.375 4 O 0.091 5.909 5 C -0.039 4.039 6 C -0.072 4.072 7 C -0.173 4.173 8 C 0.160 3.840 9 H 0.089 0.911 10 C -0.178 4.178 11 N -0.674 5.674 12 C 0.080 3.920 13 H 0.040 0.960 14 C -0.114 4.114 15 C -0.094 4.094 16 C 0.052 3.948 17 H 0.026 0.974 18 C -0.513 4.513 19 H 0.054 0.946 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.115 4.115 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.337 0.663 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.259 0.741 42 H 0.043 0.957 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.118 10.725 -12.820 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 N -0.083 5.083 4 O 0.027 5.973 5 C -0.102 4.102 6 C -0.130 4.130 7 C -0.177 4.177 8 C 0.049 3.951 9 H 0.107 0.893 10 C -0.237 4.237 11 N -0.305 5.305 12 C -0.029 4.029 13 H 0.058 0.942 14 C -0.153 4.153 15 C -0.132 4.132 16 C 0.033 3.967 17 H 0.044 0.956 18 C -0.552 4.552 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.716 3.284 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.153 4.153 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.366 12.111 -12.170 18.683 hybrid contribution -1.081 -1.371 0.061 1.747 sum 6.285 10.740 -12.110 17.364 Atomic orbital electron populations 1.20183 0.86214 1.02832 1.03846 1.23327 0.98800 0.88273 1.01713 1.73788 0.89325 1.24072 1.21066 1.84763 1.21698 1.22475 1.68373 1.24141 0.98114 0.83840 1.04140 1.20315 0.90157 0.98799 1.03690 1.20908 0.91341 0.97273 1.08174 1.19714 0.96210 0.88599 0.90570 0.89293 1.22489 1.01740 1.01907 0.97565 1.60665 1.06823 1.24068 1.38945 1.22521 0.98522 0.85764 0.96045 0.94167 1.22287 0.96538 1.00079 0.96378 1.22026 0.97801 0.96338 0.97050 1.19368 0.92838 0.91699 0.92820 0.95601 1.21124 1.06194 1.17935 1.09907 0.92777 1.24968 0.95491 0.95649 0.97814 1.69966 1.27794 1.21277 1.33835 0.86725 0.82203 0.77651 0.81794 1.20368 1.21389 1.20308 1.22725 0.93218 1.00732 0.98611 0.89499 0.91138 0.90425 0.89750 0.89980 0.88993 0.92216 0.91719 0.92344 0.84322 0.92225 0.94334 0.93047 0.92917 0.93108 0.93835 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 9.46 36.00 0.34 -0.46 16 2 C 0.04 0.51 7.28 -82.10 -0.60 -0.09 16 3 N -0.38 -5.51 12.07 33.42 0.40 -5.11 16 4 O 0.09 1.23 11.20 17.17 0.19 1.42 16 5 C -0.04 -0.45 7.49 -35.30 -0.26 -0.72 16 6 C -0.07 -0.56 10.26 36.01 0.37 -0.19 16 7 C -0.17 -2.19 5.23 -104.42 -0.55 -2.73 16 8 C 0.16 1.94 2.81 -68.86 -0.19 1.75 16 9 H 0.09 1.08 6.74 -51.93 -0.35 0.73 16 10 C -0.18 -1.85 9.13 37.16 0.34 -1.51 16 11 N -0.67 -9.57 5.67 -99.23 -0.56 -10.13 16 12 C 0.08 1.34 2.95 -66.07 -0.19 1.15 16 13 H 0.04 0.66 7.20 -51.93 -0.37 0.28 16 14 C -0.11 -2.13 6.35 -25.61 -0.16 -2.29 16 15 C -0.09 -2.17 5.41 -25.62 -0.14 -2.30 16 16 C 0.05 1.26 2.79 -90.12 -0.25 1.00 16 17 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.51 -13.97 8.40 -34.44 -0.29 -14.26 16 19 H 0.05 1.45 7.77 -52.49 -0.41 1.05 16 20 C 0.06 1.72 5.33 -17.82 -0.09 1.63 16 21 N -0.89 -25.49 12.36 55.43 0.69 -24.81 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.11 -2.26 5.70 -24.76 -0.14 -2.40 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.74 5.92 -51.93 -0.31 0.43 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.70 7.28 -51.93 -0.38 0.32 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 35 H 0.06 0.58 6.99 -51.93 -0.36 0.22 16 36 H 0.34 4.44 6.40 -39.29 -0.25 4.19 16 37 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 1.29 7.83 -51.93 -0.41 0.89 16 40 H 0.05 1.30 7.94 -51.93 -0.41 0.88 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -29.80 341.80 -7.97 -37.77 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.99 Total: 0.88 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.83 Total: -21.43 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.53 Total: -40.05 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.19 Total: 1.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.80 -7.97 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926512282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.454 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds