Wall clock time and date at job start Tue Mar 31 2020 00:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30175 * 126.80809 * 2 1 4 4 O 1.20913 * 111.60728 * 180.25338 * 3 2 1 5 5 C 1.34043 * 111.56716 * 359.74481 * 4 3 2 6 6 C 1.50700 * 126.77699 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44609 * 0.02562 * 5 4 3 8 8 C 1.50700 * 128.00506 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47204 * 14.99670 * 8 7 5 10 10 C 1.53001 * 109.46857 * 254.99845 * 8 7 5 11 11 N 1.46900 * 109.47115 * 134.99930 * 8 7 5 12 12 C 1.46891 * 111.00097 * 204.99559 * 11 8 7 13 13 H 1.08998 * 110.43494 * 323.91749 * 12 11 8 14 14 C 1.54274 * 110.48375 * 86.45454 * 12 11 8 15 15 C 1.53874 * 106.59583 * 142.42106 * 14 12 11 16 16 C 1.54261 * 106.60056 * 0.02562 * 15 14 12 17 17 H 1.08999 * 110.48869 * 95.20527 * 16 15 14 18 18 C 1.50702 * 110.48402 * 217.71282 * 16 15 14 19 19 H 1.08002 * 120.00299 * 118.55010 * 18 16 15 20 20 C 1.37884 * 119.99942 * 298.26568 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.54885 * 104.19644 * 336.38879 * 16 15 14 27 27 H 1.09001 * 109.47063 * 270.17038 * 1 2 3 28 28 H 1.09005 * 109.46850 * 30.16383 * 1 2 3 29 29 H 1.08998 * 109.47743 * 150.16454 * 1 2 3 30 30 H 1.08996 * 109.47724 * 270.00112 * 6 5 4 31 31 H 1.08999 * 109.47004 * 30.00738 * 6 5 4 32 32 H 1.08998 * 109.46988 * 149.99868 * 6 5 4 33 33 H 1.08995 * 109.47466 * 60.00180 * 10 8 7 34 34 H 1.09000 * 109.47210 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47071 * 299.99906 * 10 8 7 36 36 H 1.00904 * 111.00093 * 81.03850 * 11 8 7 37 37 H 1.08998 * 110.03110 * 23.13542 * 14 12 11 38 38 H 1.09001 * 110.02903 * 261.70607 * 14 12 11 39 39 H 1.09004 * 110.03230 * 240.71337 * 15 14 12 40 40 H 1.09000 * 110.03197 * 119.28620 * 15 14 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 42 42 H 1.09002 * 110.75604 * 156.26006 * 26 16 15 43 43 H 1.09004 * 110.75942 * 279.62814 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7252 -0.0050 5 6 3.6024 -0.6069 -0.0035 6 6 4.9020 -1.3698 -0.0089 7 6 2.3538 -1.1321 0.0027 8 6 1.9589 -2.5865 0.0062 9 1 2.8228 -3.1969 0.2690 10 6 1.4588 -2.9824 -1.3845 11 7 0.8899 -2.8012 0.9905 12 6 0.8783 -4.1930 1.4600 13 1 1.1373 -4.8711 0.6468 14 6 1.8523 -4.3719 2.6430 15 6 1.1824 -5.3548 3.6190 16 6 -0.1749 -5.7395 2.9949 17 1 -0.0863 -6.6686 2.4319 18 6 -1.2288 -5.8708 4.0642 19 1 -2.0956 -5.2266 4.0501 20 6 -1.0893 -6.8172 5.0571 21 7 -0.0338 -7.6015 5.0743 22 14 -2.3993 -6.9850 6.3780 23 1 -3.7007 -7.3184 5.7451 24 1 -2.0157 -8.0661 7.3211 25 1 -2.5229 -5.7037 7.1185 26 6 -0.5064 -4.5586 2.0492 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8886 -0.5164 29 1 -0.3634 -0.8914 -0.5112 30 1 5.2102 -1.5555 -1.0378 31 1 5.6685 -0.7853 0.5001 32 1 4.7675 -2.3203 0.5073 33 1 2.2519 -2.8231 -2.1149 34 1 1.1727 -4.0342 -1.3820 35 1 0.5948 -2.3719 -1.6473 36 1 -0.0082 -2.5398 0.6119 37 1 2.0218 -3.4142 3.1350 38 1 2.7978 -4.7830 2.2892 39 1 1.0268 -4.8742 4.5849 40 1 1.8028 -6.2429 3.7391 41 1 0.0646 -8.2671 5.7731 42 1 -1.1903 -4.8747 1.2615 43 1 -0.9212 -3.7201 2.6088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926512282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:12 Heat of formation + Delta-G solvation = 18.734680 kcal Electronic energy + Delta-G solvation = -22165.362231 eV Core-core repulsion = 19018.963469 eV Total energy + Delta-G solvation = -3146.398761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.82161 -39.66983 -37.51113 -35.12280 -34.50702 -33.68393 -30.77658 -29.86787 -29.55286 -28.40770 -27.66263 -25.56358 -24.66880 -21.97357 -21.30296 -20.76255 -20.49837 -18.59163 -18.27803 -17.76135 -16.81393 -16.53722 -16.30811 -15.68548 -14.98533 -14.88543 -14.59594 -14.28508 -14.09232 -13.95744 -13.88870 -13.63682 -13.56749 -13.48705 -13.24128 -12.98853 -12.80100 -12.63344 -12.40579 -12.32724 -11.96586 -11.74709 -11.66410 -11.53955 -11.33471 -10.95007 -10.70585 -10.69505 -10.44153 -10.01630 -9.26972 -8.09395 -6.18318 0.58062 1.32123 1.42266 1.43404 1.50682 2.29025 2.45224 3.11392 3.21804 3.45629 3.65057 3.91455 3.98954 4.09397 4.15259 4.31925 4.38418 4.40343 4.49876 4.65929 4.70003 4.72222 4.75098 4.81206 4.88788 4.92200 4.99502 5.01032 5.05267 5.16744 5.17220 5.21079 5.23914 5.31305 5.40071 5.49058 5.56104 5.71076 5.95798 6.03669 6.27370 6.44157 6.56224 6.93088 7.39661 7.48814 8.99270 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.003771 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.524939 B = 7423.679610 C = 7687.393655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.029 3.971 3 N -0.405 5.405 4 O 0.079 5.921 5 C -0.032 4.032 6 C -0.073 4.073 7 C -0.190 4.190 8 C 0.165 3.835 9 H 0.093 0.907 10 C -0.173 4.173 11 N -0.678 5.678 12 C 0.099 3.901 13 H 0.054 0.946 14 C -0.104 4.104 15 C -0.084 4.084 16 C 0.040 3.960 17 H -0.001 1.001 18 C -0.532 4.532 19 H 0.052 0.948 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.949 3.051 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.105 4.105 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.345 0.655 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.028 0.972 41 H 0.259 0.741 42 H 0.056 0.944 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.336 11.229 -13.993 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 N -0.115 5.115 4 O 0.017 5.983 5 C -0.096 4.096 6 C -0.130 4.130 7 C -0.195 4.195 8 C 0.054 3.946 9 H 0.111 0.889 10 C -0.232 4.232 11 N -0.310 5.310 12 C -0.010 4.010 13 H 0.071 0.929 14 C -0.142 4.142 15 C -0.123 4.123 16 C 0.021 3.979 17 H 0.017 0.983 18 C -0.570 4.570 19 H 0.070 0.930 20 C -0.187 4.187 21 N -0.559 5.559 22 Si 0.775 3.225 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.143 4.143 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.166 0.834 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.588 12.631 -13.359 19.889 hybrid contribution -1.118 -1.527 0.424 1.939 sum 6.471 11.104 -12.935 18.234 Atomic orbital electron populations 1.20260 0.84962 1.03969 1.03871 1.23768 0.99846 0.88383 1.01004 1.73779 0.89894 1.25080 1.22748 1.84728 1.21402 1.23504 1.68637 1.24841 0.99447 0.83238 1.02042 1.20534 0.88559 0.98510 1.05410 1.21017 0.91677 0.97295 1.09491 1.19719 0.95525 0.88359 0.90963 0.88934 1.22432 1.02308 1.01842 0.96611 1.60524 1.08004 1.21999 1.40473 1.22189 0.95651 0.87643 0.95555 0.92860 1.22149 0.97487 0.98569 0.96000 1.21810 0.97427 0.96214 0.96852 1.19379 0.92942 0.92485 0.93077 0.98252 1.21541 1.06830 1.17815 1.10824 0.92981 1.25731 0.97458 0.95498 0.99966 1.70090 1.29396 1.21840 1.34560 0.85750 0.79895 0.77633 0.79210 1.19524 1.21119 1.19877 1.22537 0.95373 0.98390 0.97956 0.89911 0.90361 0.88985 0.87469 0.88700 0.88465 0.90959 0.91727 0.91940 0.83421 0.92350 0.92245 0.96060 0.95353 0.93230 0.92511 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.46 71.24 0.67 -0.81 16 2 C 0.03 0.73 7.28 43.58 0.32 1.05 16 3 N -0.41 -11.59 12.07 -49.56 -0.60 -12.19 16 4 O 0.08 2.04 11.20 71.62 0.80 2.85 16 5 C -0.03 -0.68 7.49 25.04 0.19 -0.49 16 6 C -0.07 -0.92 10.26 71.24 0.73 -0.19 16 7 C -0.19 -4.42 5.23 -19.73 -0.10 -4.53 16 8 C 0.16 3.53 2.81 44.17 0.12 3.65 16 9 H 0.09 1.94 6.74 -2.39 -0.02 1.92 16 10 C -0.17 -3.04 9.13 71.98 0.66 -2.38 16 11 N -0.68 -17.63 5.67 -467.87 -2.65 -20.28 16 12 C 0.10 3.11 2.95 45.99 0.14 3.25 16 13 H 0.05 1.58 7.20 -2.39 -0.02 1.56 16 14 C -0.10 -3.73 6.35 31.32 0.20 -3.53 16 15 C -0.08 -3.98 5.41 31.32 0.17 -3.81 16 16 C 0.04 1.98 2.79 -10.47 -0.03 1.95 16 17 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 18 C -0.53 -29.36 8.40 25.60 0.22 -29.15 16 19 H 0.05 2.82 7.77 -2.91 -0.02 2.79 16 20 C 0.01 0.68 5.33 84.66 0.45 1.13 16 21 N -0.92 -53.80 12.36 21.45 0.27 -53.54 16 22 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 26 C -0.10 -4.02 5.70 31.87 0.18 -3.84 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.09 1.55 5.92 -2.39 -0.01 1.54 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.16 7.28 -2.39 -0.02 1.14 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.15 7.45 -2.39 -0.02 1.14 16 35 H 0.06 1.05 6.99 -2.39 -0.02 1.03 16 36 H 0.35 8.21 6.40 -89.69 -0.57 7.64 16 37 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.02 1.08 7.83 -2.38 -0.02 1.06 16 40 H 0.03 1.42 7.94 -2.39 -0.02 1.40 16 41 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 2.31 8.05 -2.38 -0.02 2.29 16 Total: -1.00 -65.21 341.80 4.17 -61.03 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.42 Total: 13.86 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.91 Total: -37.70 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.99 Total: -86.01 kcal Atomic # 8 Polarization: 2.04 SS G_CDS: 0.80 Total: 2.85 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.21 4.17 -61.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926512282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.769 kcal (2) G-P(sol) polarization free energy of solvation -65.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds