Wall clock time and date at job start Tue Mar 31 2020 00:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30513 * 125.58623 * 2 1 4 4 C 1.33873 * 108.55849 * 180.24780 * 3 2 1 5 5 C 1.34682 * 107.72248 * 0.04723 * 4 3 2 6 6 O 1.34039 * 107.31002 * 359.94118 * 5 4 3 7 7 C 1.50711 * 124.35886 * 179.85926 * 5 4 3 8 8 C 1.53380 * 108.40973 * 343.52776 * 7 5 4 9 9 C 1.53128 * 109.45337 * 49.68699 * 8 7 5 10 10 C 1.50806 * 128.11808 * 180.02562 * 4 3 2 11 11 H 1.09006 * 109.67236 * 283.11332 * 10 4 3 12 12 N 1.46901 * 109.67805 * 43.61488 * 10 4 3 13 13 C 1.46897 * 110.99503 * 274.99970 * 12 10 4 14 14 C 1.53010 * 109.46697 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46866 * 299.99867 * 14 13 12 16 16 C 1.52995 * 109.46952 * 59.99871 * 14 13 12 17 17 C 1.50703 * 109.46946 * 180.02562 * 14 13 12 18 18 H 1.07993 * 119.99858 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99673 * 179.97438 * 17 14 13 20 20 N 1.31520 * 120.00150 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99859 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47314 * 90.00267 * 21 19 17 23 23 H 1.48511 * 109.47087 * 209.99918 * 21 19 17 24 24 H 1.48499 * 109.47499 * 330.00112 * 21 19 17 25 25 H 1.08998 * 109.47143 * 179.71926 * 1 2 3 26 26 H 1.08998 * 109.46954 * 299.71435 * 1 2 3 27 27 H 1.08997 * 109.46935 * 59.71512 * 1 2 3 28 28 H 1.08998 * 109.67763 * 103.26218 * 7 5 4 29 29 H 1.08994 * 109.67241 * 223.80177 * 7 5 4 30 30 H 1.09001 * 109.47951 * 289.69184 * 8 7 5 31 31 H 1.09001 * 109.47853 * 169.68201 * 8 7 5 32 32 H 1.09004 * 109.47076 * 170.08417 * 9 8 7 33 33 H 1.08996 * 109.46533 * 50.09228 * 9 8 7 34 34 H 1.00895 * 110.99500 * 38.95126 * 12 10 4 35 35 H 1.08998 * 109.47739 * 299.99365 * 13 12 10 36 36 H 1.09000 * 109.47304 * 60.00244 * 13 12 10 37 37 H 1.09003 * 109.47265 * 60.00174 * 15 14 13 38 38 H 1.09000 * 109.46896 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47496 * 299.99941 * 15 14 13 40 40 H 1.08998 * 109.47429 * 60.00187 * 16 14 13 41 41 H 1.09006 * 109.46849 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.47275 * 299.99884 * 16 14 13 43 43 H 0.96998 * 119.99667 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2665 1.0614 0.0000 4 6 3.5466 0.6694 -0.0055 5 6 3.5629 -0.6774 -0.0100 6 8 2.2882 -1.0917 -0.0059 7 6 4.8172 -1.5128 -0.0199 8 6 5.9916 -0.6184 -0.4364 9 6 5.9799 0.6624 0.4028 10 6 4.7841 1.5312 -0.0071 11 1 4.9488 1.9350 -1.0062 12 7 4.6210 2.6329 0.9508 13 6 3.9117 3.7634 0.3370 14 6 3.7606 4.8883 1.3631 15 6 2.9636 4.3782 2.5654 16 6 5.1453 5.3456 1.8260 17 6 3.0324 6.0479 0.7337 18 1 2.7100 5.9886 -0.2953 19 6 2.7777 7.1844 1.4715 20 7 3.1699 7.2563 2.7248 21 14 1.8757 8.6220 0.6912 22 1 0.4142 8.4605 0.8981 23 1 2.3275 9.8896 1.3193 24 1 2.1685 8.6589 -0.7642 25 1 -0.3633 -1.0276 -0.0050 26 1 -0.3633 0.5094 0.8925 27 1 -0.3633 0.5182 -0.8874 28 1 4.9979 -1.9154 0.9767 29 1 4.7079 -2.3303 -0.7324 30 1 5.8970 -0.3622 -1.4916 31 1 6.9290 -1.1504 -0.2742 32 1 6.9045 1.2149 0.2355 33 1 5.8970 0.4042 1.4585 34 1 4.1482 2.3194 1.7852 35 1 4.4792 4.1265 -0.5197 36 1 2.9250 3.4376 0.0076 37 1 3.4899 3.5393 3.0208 38 1 2.8555 5.1797 3.2961 39 1 1.9771 4.0524 2.2356 40 1 5.7131 5.7090 0.9695 41 1 5.0376 6.1467 2.5574 42 1 5.6716 4.5067 2.2815 43 1 2.9904 8.0557 3.2440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926566739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:48 Heat of formation + Delta-G solvation = 8.347808 kcal Electronic energy + Delta-G solvation = -22613.587476 eV Core-core repulsion = 19466.738306 eV Total energy + Delta-G solvation = -3146.849170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.32886 -37.98119 -36.11333 -34.69598 -33.16575 -31.47325 -30.89878 -28.56609 -27.15428 -25.43510 -25.10131 -23.75092 -22.72939 -22.00442 -21.34330 -19.51052 -18.29848 -16.90908 -16.77452 -15.72593 -15.26773 -14.90406 -14.51147 -14.27130 -14.11884 -13.64161 -13.24297 -13.13719 -12.89027 -12.65925 -12.54100 -12.39440 -12.06963 -11.78152 -11.26799 -11.12942 -11.06710 -10.95828 -10.88095 -10.64686 -10.54491 -10.45785 -10.15635 -10.05297 -9.95805 -9.26413 -8.90690 -8.52401 -8.40446 -8.18922 -7.58105 -5.81256 -3.90493 1.52638 2.68467 2.83076 3.37452 3.43883 3.47691 4.03734 4.50758 4.60374 4.67929 4.82860 4.92774 5.02771 5.11973 5.35292 5.35765 5.44041 5.45927 5.51045 5.58344 5.71922 5.74492 5.92089 5.95686 6.14501 6.28485 6.30990 6.44280 6.50678 6.75218 6.90141 7.10270 7.20999 7.32529 7.48269 7.58641 7.83874 7.87367 7.92454 7.95406 8.08880 8.33598 8.46193 8.68370 9.10990 9.73548 11.19325 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.004926 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.623331 B = 5683.097190 C = 6543.387306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.171 3.829 3 N -0.455 5.455 4 C -0.030 4.030 5 C -0.061 4.061 6 O -0.201 6.201 7 C -0.027 4.027 8 C -0.116 4.116 9 C -0.108 4.108 10 C 0.166 3.834 11 H 0.087 0.913 12 N -0.668 5.668 13 C 0.072 3.928 14 C 0.070 3.930 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.500 4.500 18 H 0.051 0.949 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.887 3.113 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.339 0.661 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.006 0.994 38 H 0.080 0.920 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -18.263 -4.658 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.035 4.035 3 N -0.184 5.184 4 C -0.154 4.154 5 C -0.115 4.115 6 O -0.089 6.089 7 C -0.064 4.064 8 C -0.154 4.154 9 C -0.147 4.147 10 C 0.054 3.946 11 H 0.104 0.896 12 N -0.297 5.297 13 C -0.056 4.056 14 C 0.069 3.931 15 C -0.185 4.185 16 C -0.177 4.177 17 C -0.539 4.539 18 H 0.069 0.931 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.716 3.284 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.201 1.201 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.025 0.975 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.724 -17.254 -4.618 17.945 hybrid contribution -1.396 -0.230 -0.485 1.496 sum 0.328 -17.484 -5.102 18.217 Atomic orbital electron populations 1.20185 0.81521 1.04063 1.05168 1.26455 0.96368 0.78479 1.02191 1.70269 1.01664 1.29545 1.16931 1.22820 0.94422 0.92712 1.05413 1.23209 0.83846 0.95465 1.08997 1.84208 1.16582 1.37870 1.70227 1.20132 0.86792 0.96540 1.02961 1.21643 0.96797 0.96171 1.00812 1.21634 0.98405 0.94530 1.00101 1.20223 0.87028 0.89356 0.97999 0.89555 1.60833 1.55679 1.06306 1.06909 1.22227 0.95274 0.90323 0.97780 1.18072 0.93147 0.90766 0.91072 1.21779 0.97224 0.98701 1.00808 1.21646 0.96334 0.99762 0.99935 1.21118 1.35760 0.99353 0.97633 0.93093 1.24877 0.95788 0.98113 0.94866 1.69847 1.47019 1.27996 1.07722 0.86681 0.79982 0.82316 0.79468 1.20945 1.21394 1.20121 0.89869 0.88534 0.88690 0.89632 0.90102 0.91237 0.90125 0.89993 0.91309 0.84127 0.93255 0.94572 0.97499 0.90099 0.96126 0.96398 0.90873 0.96251 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.53 10.51 36.01 0.38 -0.15 16 2 C 0.17 2.56 8.35 -12.84 -0.11 2.45 16 3 N -0.46 -8.22 10.12 -7.26 -0.07 -8.30 16 4 C -0.03 -0.50 6.22 -82.91 -0.52 -1.02 16 5 C -0.06 -0.87 7.24 -35.56 -0.26 -1.13 16 6 O -0.20 -2.96 10.77 6.60 0.07 -2.89 16 7 C -0.03 -0.27 6.30 -27.68 -0.17 -0.44 16 8 C -0.12 -1.08 5.91 -26.47 -0.16 -1.24 16 9 C -0.11 -1.32 5.53 -26.47 -0.15 -1.46 16 10 C 0.17 2.65 2.83 -68.61 -0.19 2.45 16 11 H 0.09 1.42 7.82 -51.93 -0.41 1.02 16 12 N -0.67 -12.78 5.47 -107.68 -0.59 -13.37 16 13 C 0.07 1.62 4.37 -3.82 -0.02 1.61 16 14 C 0.07 1.78 0.57 -155.66 -0.09 1.69 16 15 C -0.13 -3.20 7.92 37.16 0.29 -2.91 16 16 C -0.12 -3.00 8.09 37.16 0.30 -2.70 16 17 C -0.50 -14.01 8.01 -34.44 -0.28 -14.29 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.79 5.15 -17.82 -0.09 1.69 16 20 N -0.89 -25.27 9.35 55.43 0.52 -24.75 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 34 H 0.34 6.80 6.52 -39.29 -0.26 6.55 16 35 H 0.05 1.13 8.06 -51.93 -0.42 0.71 16 36 H 0.04 0.86 6.95 -51.93 -0.36 0.50 16 37 H 0.01 0.14 6.57 -51.93 -0.34 -0.20 16 38 H 0.08 2.22 6.07 -51.93 -0.31 1.91 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 2.01 6.07 -51.93 -0.32 1.70 16 42 H 0.02 0.44 7.60 -51.93 -0.39 0.05 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -31.19 334.80 -8.10 -39.29 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.00 Total: 3.68 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.05 Total: -15.44 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.14 Total: -46.41 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: 0.07 Total: -2.89 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.19 -8.10 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926566739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.640 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds