Wall clock time and date at job start Tue Mar 31 2020 00:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30513 * 125.58623 * 2 1 4 4 C 1.33873 * 108.55849 * 180.24780 * 3 2 1 5 5 C 1.34682 * 107.72248 * 0.04723 * 4 3 2 6 6 O 1.34039 * 107.31002 * 359.94118 * 5 4 3 7 7 C 1.50711 * 124.35886 * 179.85926 * 5 4 3 8 8 C 1.53380 * 108.40973 * 343.52776 * 7 5 4 9 9 C 1.53128 * 109.45337 * 49.68699 * 8 7 5 10 10 C 1.50806 * 128.11808 * 180.02562 * 4 3 2 11 11 H 1.09006 * 109.67236 * 283.11332 * 10 4 3 12 12 N 1.46901 * 109.67805 * 43.61488 * 10 4 3 13 13 C 1.46897 * 110.99503 * 274.99970 * 12 10 4 14 14 C 1.53010 * 109.46697 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46866 * 299.99867 * 14 13 12 16 16 C 1.52995 * 109.46952 * 59.99871 * 14 13 12 17 17 C 1.50703 * 109.46946 * 180.02562 * 14 13 12 18 18 H 1.07993 * 119.99858 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99673 * 179.97438 * 17 14 13 20 20 N 1.31520 * 120.00150 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99859 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47314 * 90.00267 * 21 19 17 23 23 H 1.48511 * 109.47087 * 209.99918 * 21 19 17 24 24 H 1.48499 * 109.47499 * 330.00112 * 21 19 17 25 25 H 1.08998 * 109.47143 * 179.71926 * 1 2 3 26 26 H 1.08998 * 109.46954 * 299.71435 * 1 2 3 27 27 H 1.08997 * 109.46935 * 59.71512 * 1 2 3 28 28 H 1.08998 * 109.67763 * 103.26218 * 7 5 4 29 29 H 1.08994 * 109.67241 * 223.80177 * 7 5 4 30 30 H 1.09001 * 109.47951 * 289.69184 * 8 7 5 31 31 H 1.09001 * 109.47853 * 169.68201 * 8 7 5 32 32 H 1.09004 * 109.47076 * 170.08417 * 9 8 7 33 33 H 1.08996 * 109.46533 * 50.09228 * 9 8 7 34 34 H 1.00895 * 110.99500 * 38.95126 * 12 10 4 35 35 H 1.08998 * 109.47739 * 299.99365 * 13 12 10 36 36 H 1.09000 * 109.47304 * 60.00244 * 13 12 10 37 37 H 1.09003 * 109.47265 * 60.00174 * 15 14 13 38 38 H 1.09000 * 109.46896 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47496 * 299.99941 * 15 14 13 40 40 H 1.08998 * 109.47429 * 60.00187 * 16 14 13 41 41 H 1.09006 * 109.46849 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.47275 * 299.99884 * 16 14 13 43 43 H 0.96998 * 119.99667 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2665 1.0614 0.0000 4 6 3.5466 0.6694 -0.0055 5 6 3.5629 -0.6774 -0.0100 6 8 2.2882 -1.0917 -0.0059 7 6 4.8172 -1.5128 -0.0199 8 6 5.9916 -0.6184 -0.4364 9 6 5.9799 0.6624 0.4028 10 6 4.7841 1.5312 -0.0071 11 1 4.9488 1.9350 -1.0062 12 7 4.6210 2.6329 0.9508 13 6 3.9117 3.7634 0.3370 14 6 3.7606 4.8883 1.3631 15 6 2.9636 4.3782 2.5654 16 6 5.1453 5.3456 1.8260 17 6 3.0324 6.0479 0.7337 18 1 2.7100 5.9886 -0.2953 19 6 2.7777 7.1844 1.4715 20 7 3.1699 7.2563 2.7248 21 14 1.8757 8.6220 0.6912 22 1 0.4142 8.4605 0.8981 23 1 2.3275 9.8896 1.3193 24 1 2.1685 8.6589 -0.7642 25 1 -0.3633 -1.0276 -0.0050 26 1 -0.3633 0.5094 0.8925 27 1 -0.3633 0.5182 -0.8874 28 1 4.9979 -1.9154 0.9767 29 1 4.7079 -2.3303 -0.7324 30 1 5.8970 -0.3622 -1.4916 31 1 6.9290 -1.1504 -0.2742 32 1 6.9045 1.2149 0.2355 33 1 5.8970 0.4042 1.4585 34 1 4.1482 2.3194 1.7852 35 1 4.4792 4.1265 -0.5197 36 1 2.9250 3.4376 0.0076 37 1 3.4899 3.5393 3.0208 38 1 2.8555 5.1797 3.2961 39 1 1.9771 4.0524 2.2356 40 1 5.7131 5.7090 0.9695 41 1 5.0376 6.1467 2.5574 42 1 5.6716 4.5067 2.2815 43 1 2.9904 8.0557 3.2440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926566739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:48 Heat of formation + Delta-G solvation = -12.410097 kcal Electronic energy + Delta-G solvation = -22614.487607 eV Core-core repulsion = 19466.738306 eV Total energy + Delta-G solvation = -3147.749300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.44946 -39.31421 -37.73334 -35.86588 -34.78443 -32.76671 -32.39484 -29.75181 -28.27129 -27.51897 -27.23852 -25.41289 -23.83957 -23.08819 -22.48962 -20.63294 -20.22170 -18.16786 -17.92759 -17.69720 -16.77397 -16.32808 -15.79027 -15.53995 -15.47825 -14.94386 -14.49840 -14.37611 -14.20819 -13.96876 -13.82560 -13.65596 -13.37384 -13.15328 -13.10648 -12.90076 -12.60417 -12.50657 -12.19735 -12.17303 -12.10843 -12.02117 -11.84730 -11.70866 -11.35026 -11.30914 -10.80773 -10.60757 -10.34220 -9.57909 -9.11512 -7.95898 -6.12436 0.43813 1.41421 1.42579 1.52113 1.64680 1.67608 2.46837 3.01327 3.25529 3.43477 3.71531 3.83570 4.00633 4.07939 4.16433 4.40675 4.51969 4.57588 4.57861 4.60496 4.71932 4.76115 4.82766 4.86379 4.91990 4.97409 5.08754 5.10002 5.19888 5.24192 5.27772 5.30269 5.36981 5.42893 5.44359 5.55204 5.69805 5.76617 6.17014 6.23951 6.32896 6.47794 6.59751 6.82523 6.95704 7.54316 9.02534 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.004926 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.623331 B = 5683.097190 C = 6543.387306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.166 3.834 3 N -0.506 5.506 4 C -0.067 4.067 5 C -0.050 4.050 6 O -0.203 6.203 7 C -0.027 4.027 8 C -0.108 4.108 9 C -0.102 4.102 10 C 0.163 3.837 11 H 0.073 0.927 12 N -0.664 5.664 13 C 0.093 3.907 14 C 0.062 3.938 15 C -0.111 4.111 16 C -0.104 4.104 17 C -0.524 4.524 18 H 0.039 0.961 19 C 0.023 3.977 20 N -0.904 5.904 21 Si 0.945 3.055 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.274 1.274 25 H 0.113 0.887 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.334 0.666 35 H 0.039 0.961 36 H 0.017 0.983 37 H 0.024 0.976 38 H 0.057 0.943 39 H 0.008 0.992 40 H 0.011 0.989 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 -20.255 -5.040 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.040 4.040 3 N -0.235 5.235 4 C -0.189 4.189 5 C -0.104 4.104 6 O -0.090 6.090 7 C -0.064 4.064 8 C -0.145 4.145 9 C -0.140 4.140 10 C 0.052 3.948 11 H 0.091 0.909 12 N -0.293 5.293 13 C -0.036 4.036 14 C 0.062 3.938 15 C -0.169 4.169 16 C -0.162 4.162 17 C -0.563 4.563 18 H 0.057 0.943 19 C -0.176 4.176 20 N -0.543 5.543 21 Si 0.772 3.228 22 H -0.205 1.205 23 H -0.207 1.207 24 H -0.199 1.199 25 H 0.132 0.868 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.242 -19.258 -5.007 20.024 hybrid contribution -1.571 0.347 -0.376 1.652 sum 0.671 -18.911 -5.383 19.674 Atomic orbital electron populations 1.20413 0.78681 1.06194 1.05515 1.27280 0.97810 0.77981 1.00897 1.70224 1.02990 1.31487 1.18841 1.22858 0.94035 0.93984 1.07988 1.23984 0.84795 0.95292 1.06343 1.84240 1.16877 1.37764 1.70154 1.20429 0.84540 0.96615 1.04784 1.21650 0.98186 0.94706 0.99998 1.21611 0.96435 0.95386 1.00594 1.20353 0.88860 0.89000 0.96575 0.90900 1.60799 1.54342 1.06838 1.07275 1.21807 0.94501 0.90767 0.96559 1.18116 0.92889 0.91165 0.91665 1.21570 0.96838 0.98334 1.00132 1.21458 0.96351 0.99389 0.98968 1.21381 1.36680 1.00837 0.97365 0.94308 1.25529 0.96438 1.00298 0.95355 1.69968 1.47334 1.28510 1.08483 0.85761 0.78885 0.79505 0.78655 1.20526 1.20708 1.19939 0.86846 0.88362 0.87980 0.87782 0.87645 0.91348 0.86586 0.89513 0.91374 0.84782 0.94277 0.96480 0.95667 0.92445 0.97281 0.96964 0.93237 0.94671 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.98 10.51 71.24 0.75 -0.23 16 2 C 0.17 4.90 8.35 88.31 0.74 5.64 16 3 N -0.51 -18.58 10.12 -291.41 -2.95 -21.53 16 4 C -0.07 -2.20 6.22 41.47 0.26 -1.94 16 5 C -0.05 -1.33 7.24 24.87 0.18 -1.15 16 6 O -0.20 -5.66 10.77 0.70 0.01 -5.65 16 7 C -0.03 -0.43 6.30 29.98 0.19 -0.25 16 8 C -0.11 -1.63 5.91 30.76 0.18 -1.45 16 9 C -0.10 -2.28 5.53 30.77 0.17 -2.11 16 10 C 0.16 5.20 2.83 44.33 0.13 5.32 16 11 H 0.07 2.46 7.82 -2.38 -0.02 2.44 16 12 N -0.66 -25.62 5.47 -494.58 -2.71 -28.33 16 13 C 0.09 4.29 4.37 86.31 0.38 4.67 16 14 C 0.06 3.23 0.57 -52.93 -0.03 3.20 16 15 C -0.11 -5.69 7.92 71.98 0.57 -5.12 16 16 C -0.10 -5.30 8.09 71.98 0.58 -4.72 16 17 C -0.52 -30.06 8.01 25.60 0.21 -29.85 16 18 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 19 C 0.02 1.28 5.15 84.65 0.44 1.71 16 20 N -0.90 -52.17 9.35 21.45 0.20 -51.97 16 21 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 25 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 1.54 8.12 -2.39 -0.02 1.53 16 34 H 0.33 13.48 6.52 -89.70 -0.58 12.89 16 35 H 0.04 1.85 8.06 -2.39 -0.02 1.83 16 36 H 0.02 0.85 6.95 -2.39 -0.02 0.83 16 37 H 0.02 1.15 6.57 -2.39 -0.02 1.14 16 38 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.05 2.76 6.07 -2.38 -0.01 2.74 16 42 H 0.03 1.63 7.60 -2.39 -0.02 1.61 16 43 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -68.87 334.80 1.72 -67.14 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.41 Total: 19.55 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.73 Total: -26.28 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -5.46 Total: -101.82 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: 0.01 Total: -5.65 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.87 1.72 -67.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926566739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.735 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds