Wall clock time and date at job start Tue Mar 31 2020 00:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47038 * 2 1 4 4 O 1.34036 * 126.78122 * 274.64752 * 3 2 1 5 5 N 1.20917 * 111.57324 * 179.97438 * 4 3 2 6 6 C 1.30179 * 111.60233 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.80168 * 180.02562 * 6 5 4 8 8 C 1.35453 * 126.77618 * 94.60952 * 3 2 1 9 9 C 1.50702 * 128.00417 * 359.97438 * 8 3 2 10 10 N 1.46500 * 109.47225 * 265.67807 * 9 8 3 11 11 C 1.36932 * 120.00022 * 95.55286 * 10 9 8 12 12 H 1.07997 * 120.00308 * 220.98449 * 11 10 9 13 13 C 1.38809 * 119.99833 * 40.98954 * 11 10 9 14 14 N 1.31616 * 120.00121 * 10.76422 * 13 11 10 15 15 Si 1.86803 * 120.00153 * 190.76151 * 13 11 10 16 16 H 1.48503 * 109.46663 * 60.00063 * 15 13 11 17 17 H 1.48501 * 109.47589 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47059 * 300.00293 * 15 13 11 19 19 C 1.46496 * 119.99707 * 275.55904 * 10 9 8 20 20 C 1.54268 * 110.03220 * 234.55515 * 19 10 9 21 21 C 1.54960 * 104.16442 * 217.13532 * 20 19 10 22 22 C 1.54894 * 102.77521 * 37.89094 * 21 20 19 23 23 C 1.53876 * 110.03404 * 117.34146 * 19 10 9 24 24 H 1.09006 * 109.46870 * 305.34404 * 1 2 3 25 25 H 1.09000 * 109.47319 * 65.33645 * 1 2 3 26 26 H 1.08991 * 109.47439 * 185.33924 * 1 2 3 27 27 H 1.09005 * 109.47085 * 240.00512 * 2 1 3 28 28 H 1.08998 * 109.47518 * 120.00040 * 2 1 3 29 29 H 1.09005 * 109.46733 * 89.97786 * 7 6 5 30 30 H 1.09004 * 109.46802 * 209.97274 * 7 6 5 31 31 H 1.08997 * 109.47386 * 329.97686 * 7 6 5 32 32 H 1.09005 * 109.47183 * 25.68097 * 9 8 3 33 33 H 1.09005 * 109.47109 * 145.67820 * 9 8 3 34 34 H 0.97004 * 120.00418 * 184.99828 * 14 13 11 35 35 H 1.08999 * 110.02187 * 355.94886 * 19 10 9 36 36 H 1.08999 * 110.48561 * 335.78725 * 20 19 10 37 37 H 1.09002 * 110.48529 * 98.42530 * 20 19 10 38 38 H 1.08992 * 110.72305 * 279.57727 * 21 20 19 39 39 H 1.08998 * 110.92565 * 156.29245 * 21 20 19 40 40 H 1.08997 * 110.48821 * 203.40703 * 22 21 20 41 41 H 1.09000 * 110.60134 * 80.81415 * 22 21 20 42 42 H 1.09002 * 110.02929 * 238.56541 * 23 19 10 43 43 H 1.09000 * 110.03173 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2178 2.2065 -1.0700 5 7 2.6305 3.2982 -0.7538 6 6 2.7767 3.4003 0.5357 7 6 3.2669 4.6055 1.2961 8 6 2.3848 2.1564 1.0814 9 6 2.3626 1.7446 2.5309 10 7 1.0968 2.1632 3.1382 11 6 0.0527 1.2812 3.2214 12 1 -0.9541 1.6155 3.0189 13 6 0.2882 -0.0426 3.5662 14 7 1.4704 -0.4049 4.0173 15 14 -1.0727 -1.3100 3.3901 16 1 -1.5031 -1.3801 1.9705 17 1 -0.5704 -2.6392 3.8218 18 1 -2.2268 -0.9182 4.2385 19 6 0.9481 3.5254 3.6563 20 6 0.4930 3.4836 5.1297 21 6 -0.4861 4.6779 5.2581 22 6 -1.2363 4.6529 3.9031 23 6 -0.1506 4.2689 2.8767 24 1 -0.3633 0.5945 0.8383 25 1 -0.3634 0.4288 -0.9339 26 1 -0.3634 -1.0231 0.0956 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.4191 5.2370 1.5616 30 1 3.7760 4.2803 2.2034 31 1 3.9601 5.1709 0.6732 32 1 2.4592 0.6612 2.6024 33 1 3.1919 2.2187 3.0561 34 1 1.6579 -1.3409 4.1895 35 1 1.8933 4.0617 3.5726 36 1 -0.0193 2.5458 5.3443 37 1 1.3454 3.6149 5.7962 38 1 0.0602 5.6131 5.3800 39 1 -1.1788 4.5261 6.0858 40 1 -1.6454 5.6372 3.6754 41 1 -2.0293 3.9052 3.9175 42 1 0.2613 5.1664 2.4153 43 1 -0.5729 3.6163 2.1125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929686010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:17 Heat of formation + Delta-G solvation = 55.761257 kcal Electronic energy + Delta-G solvation = -23724.875653 eV Core-core repulsion = 20580.082485 eV Total energy + Delta-G solvation = -3144.793168 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.09110 -37.82751 -35.26378 -33.88157 -33.38119 -31.10810 -29.58060 -28.24288 -27.83897 -26.81676 -25.92352 -23.35338 -22.67151 -20.52615 -19.92112 -19.25696 -18.96359 -16.88822 -16.55914 -15.87132 -15.40482 -14.75879 -14.38068 -14.05809 -13.69962 -13.48638 -13.06312 -12.79227 -12.67565 -12.54459 -12.44343 -12.30838 -11.76652 -11.39401 -11.12275 -11.06483 -10.87014 -10.67008 -10.49765 -10.45327 -10.38974 -10.27875 -10.25233 -10.02187 -9.91924 -9.77836 -9.53406 -9.10599 -8.53222 -8.25920 -6.58082 -5.81152 -3.49082 2.25094 3.02787 3.30398 3.36781 3.39828 3.90641 4.41549 4.88529 5.17869 5.25835 5.37056 5.43888 5.46132 5.64970 5.73169 5.77488 5.87040 5.89332 5.92023 6.04529 6.11774 6.15802 6.25520 6.30046 6.36889 6.43388 6.45148 6.54058 6.56509 6.60039 6.60661 6.71284 6.84090 6.93624 6.96663 6.98963 7.06277 7.22541 7.35739 7.60499 7.77531 8.50765 9.02563 9.15723 9.74927 10.35809 11.15910 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.010799 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.478124 B = 2592.298815 C = 4127.274469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.028 4.028 3 C -0.037 4.037 4 O 0.078 5.922 5 N -0.389 5.389 6 C 0.013 3.987 7 C -0.067 4.067 8 C -0.181 4.181 9 C 0.211 3.789 10 N -0.567 5.567 11 C -0.239 4.239 12 H 0.058 0.942 13 C 0.019 3.981 14 N -0.891 5.891 15 Si 0.882 3.118 16 H -0.273 1.273 17 H -0.291 1.291 18 H -0.283 1.283 19 C 0.173 3.827 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.133 4.133 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.032 0.968 34 H 0.255 0.745 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 4.663 -2.491 5.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.066 4.066 3 C -0.101 4.101 4 O 0.014 5.986 5 N -0.097 5.097 6 C -0.145 4.145 7 C -0.125 4.125 8 C -0.188 4.188 9 C 0.084 3.916 10 N -0.285 5.285 11 C -0.369 4.369 12 H 0.075 0.925 13 C -0.180 4.180 14 N -0.534 5.534 15 Si 0.711 3.289 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.209 1.209 19 C 0.065 3.935 20 C -0.167 4.167 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.172 4.172 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.704 5.316 -3.371 6.334 hybrid contribution -0.832 -0.951 0.513 1.364 sum -0.128 4.365 -2.858 5.219 Atomic orbital electron populations 1.21959 0.93843 1.02373 1.02914 1.19935 0.96805 0.86646 1.03222 1.24192 1.03652 0.96541 0.85697 1.84652 1.62572 1.17426 1.33979 1.73688 1.18358 1.01021 1.16643 1.23393 1.02889 0.98021 0.90212 1.20075 1.00852 0.92905 0.98664 1.22607 1.03136 0.92176 1.00872 1.19430 0.87447 1.03194 0.81492 1.43799 1.11907 1.08069 1.64703 1.18807 0.88215 0.90206 1.39653 0.92488 1.25210 0.96371 0.98938 0.97517 1.69860 1.21486 1.16212 1.45804 0.86753 0.82319 0.81131 0.78652 1.19841 1.21677 1.20924 1.21056 0.94861 0.86599 0.90955 1.22749 0.97738 0.98446 0.97769 1.22444 0.98324 0.98594 0.96800 1.22246 0.98167 0.99485 0.95594 1.22623 0.97308 0.98852 0.98461 0.89214 0.93847 0.92604 0.91518 0.88218 0.90757 0.90441 0.91738 0.86755 0.94930 0.93426 0.93343 0.89572 0.93579 0.92903 0.92874 0.93537 0.92074 0.94091 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.66 37.16 0.36 -2.39 16 2 C -0.03 -0.49 6.38 -27.88 -0.18 -0.67 16 3 C -0.04 -0.72 6.74 -35.30 -0.24 -0.96 16 4 O 0.08 1.54 11.20 17.19 0.19 1.73 16 5 N -0.39 -7.81 12.07 33.42 0.40 -7.41 16 6 C 0.01 0.26 7.33 -82.10 -0.60 -0.35 16 7 C -0.07 -1.05 9.62 36.01 0.35 -0.70 16 8 C -0.18 -3.67 5.90 -104.42 -0.62 -4.29 16 9 C 0.21 4.56 5.50 -5.19 -0.03 4.54 16 10 N -0.57 -12.44 2.33 -165.75 -0.39 -12.83 16 11 C -0.24 -5.66 5.91 -15.06 -0.09 -5.75 16 12 H 0.06 1.41 7.35 -52.49 -0.39 1.02 16 13 C 0.02 0.47 5.13 -17.43 -0.09 0.38 16 14 N -0.89 -22.69 11.15 55.49 0.62 -22.07 16 15 Si 0.88 19.55 29.33 -169.99 -4.99 14.56 16 16 H -0.27 -5.77 6.30 56.52 0.36 -5.42 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C 0.17 3.36 3.42 -66.81 -0.23 3.13 16 20 C -0.13 -2.43 6.41 -25.03 -0.16 -2.59 16 21 C -0.12 -1.97 6.91 -24.70 -0.17 -2.14 16 22 C -0.12 -1.92 6.83 -25.07 -0.17 -2.10 16 23 C -0.13 -2.43 6.22 -25.61 -0.16 -2.59 16 24 H 0.09 1.85 6.21 -51.93 -0.32 1.53 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.95 7.51 -51.93 -0.39 0.56 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.89 7.23 -51.93 -0.38 1.51 16 29 H 0.07 1.12 7.83 -51.93 -0.41 0.71 16 30 H 0.08 1.14 7.65 -51.93 -0.40 0.74 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.12 2.73 4.55 -51.93 -0.24 2.49 16 33 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 34 H 0.26 6.42 8.32 -40.82 -0.34 6.08 16 35 H 0.05 0.91 6.92 -51.93 -0.36 0.55 16 36 H 0.09 1.90 6.90 -51.93 -0.36 1.54 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.04 0.70 7.85 -51.93 -0.41 0.29 16 43 H 0.07 1.39 7.21 -51.93 -0.37 1.02 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -25.30 336.87 -8.08 -33.38 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.97 Total: 4.02 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.03 Total: -16.45 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.64 Total: -42.31 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: 0.19 Total: 1.73 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.99 Total: 14.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.30 -8.08 -33.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929686010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.137 kcal (2) G-P(sol) polarization free energy of solvation -25.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds