Wall clock time and date at job start Tue Mar 31 2020 00:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47038 * 2 1 4 4 O 1.34036 * 126.78122 * 274.64752 * 3 2 1 5 5 N 1.20917 * 111.57324 * 179.97438 * 4 3 2 6 6 C 1.30179 * 111.60233 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.80168 * 180.02562 * 6 5 4 8 8 C 1.35453 * 126.77618 * 94.60952 * 3 2 1 9 9 C 1.50702 * 128.00417 * 359.97438 * 8 3 2 10 10 N 1.46500 * 109.47225 * 265.67807 * 9 8 3 11 11 C 1.36932 * 120.00022 * 95.55286 * 10 9 8 12 12 H 1.07997 * 120.00308 * 220.98449 * 11 10 9 13 13 C 1.38809 * 119.99833 * 40.98954 * 11 10 9 14 14 N 1.31616 * 120.00121 * 10.76422 * 13 11 10 15 15 Si 1.86803 * 120.00153 * 190.76151 * 13 11 10 16 16 H 1.48503 * 109.46663 * 60.00063 * 15 13 11 17 17 H 1.48501 * 109.47589 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47059 * 300.00293 * 15 13 11 19 19 C 1.46496 * 119.99707 * 275.55904 * 10 9 8 20 20 C 1.54268 * 110.03220 * 234.55515 * 19 10 9 21 21 C 1.54960 * 104.16442 * 217.13532 * 20 19 10 22 22 C 1.54894 * 102.77521 * 37.89094 * 21 20 19 23 23 C 1.53876 * 110.03404 * 117.34146 * 19 10 9 24 24 H 1.09006 * 109.46870 * 305.34404 * 1 2 3 25 25 H 1.09000 * 109.47319 * 65.33645 * 1 2 3 26 26 H 1.08991 * 109.47439 * 185.33924 * 1 2 3 27 27 H 1.09005 * 109.47085 * 240.00512 * 2 1 3 28 28 H 1.08998 * 109.47518 * 120.00040 * 2 1 3 29 29 H 1.09005 * 109.46733 * 89.97786 * 7 6 5 30 30 H 1.09004 * 109.46802 * 209.97274 * 7 6 5 31 31 H 1.08997 * 109.47386 * 329.97686 * 7 6 5 32 32 H 1.09005 * 109.47183 * 25.68097 * 9 8 3 33 33 H 1.09005 * 109.47109 * 145.67820 * 9 8 3 34 34 H 0.97004 * 120.00418 * 184.99828 * 14 13 11 35 35 H 1.08999 * 110.02187 * 355.94886 * 19 10 9 36 36 H 1.08999 * 110.48561 * 335.78725 * 20 19 10 37 37 H 1.09002 * 110.48529 * 98.42530 * 20 19 10 38 38 H 1.08992 * 110.72305 * 279.57727 * 21 20 19 39 39 H 1.08998 * 110.92565 * 156.29245 * 21 20 19 40 40 H 1.08997 * 110.48821 * 203.40703 * 22 21 20 41 41 H 1.09000 * 110.60134 * 80.81415 * 22 21 20 42 42 H 1.09002 * 110.02929 * 238.56541 * 23 19 10 43 43 H 1.09000 * 110.03173 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2178 2.2065 -1.0700 5 7 2.6305 3.2982 -0.7538 6 6 2.7767 3.4003 0.5357 7 6 3.2669 4.6055 1.2961 8 6 2.3848 2.1564 1.0814 9 6 2.3626 1.7446 2.5309 10 7 1.0968 2.1632 3.1382 11 6 0.0527 1.2812 3.2214 12 1 -0.9541 1.6155 3.0189 13 6 0.2882 -0.0426 3.5662 14 7 1.4704 -0.4049 4.0173 15 14 -1.0727 -1.3100 3.3901 16 1 -1.5031 -1.3801 1.9705 17 1 -0.5704 -2.6392 3.8218 18 1 -2.2268 -0.9182 4.2385 19 6 0.9481 3.5254 3.6563 20 6 0.4930 3.4836 5.1297 21 6 -0.4861 4.6779 5.2581 22 6 -1.2363 4.6529 3.9031 23 6 -0.1506 4.2689 2.8767 24 1 -0.3633 0.5945 0.8383 25 1 -0.3634 0.4288 -0.9339 26 1 -0.3634 -1.0231 0.0956 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.4191 5.2370 1.5616 30 1 3.7760 4.2803 2.2034 31 1 3.9601 5.1709 0.6732 32 1 2.4592 0.6612 2.6024 33 1 3.1919 2.2187 3.0561 34 1 1.6579 -1.3409 4.1895 35 1 1.8933 4.0617 3.5726 36 1 -0.0193 2.5458 5.3443 37 1 1.3454 3.6149 5.7962 38 1 0.0602 5.6131 5.3800 39 1 -1.1788 4.5261 6.0858 40 1 -1.6454 5.6372 3.6754 41 1 -2.0293 3.9052 3.9175 42 1 0.2613 5.1664 2.4153 43 1 -0.5729 3.6163 2.1125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929686010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:16 Heat of formation + Delta-G solvation = 45.495971 kcal Electronic energy + Delta-G solvation = -23725.320790 eV Core-core repulsion = 20580.082485 eV Total energy + Delta-G solvation = -3145.238305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.62829 -39.37933 -36.81527 -35.36695 -34.99740 -32.86170 -31.11487 -29.62241 -29.29025 -28.32424 -27.69311 -24.90134 -24.28427 -22.11514 -21.29342 -20.81401 -20.52144 -18.45748 -18.21970 -17.49611 -17.03964 -16.32952 -16.00849 -15.57621 -15.17846 -15.07264 -14.59484 -14.20664 -14.09239 -14.05998 -13.85408 -13.75281 -13.23617 -13.04048 -12.77191 -12.71644 -12.48303 -12.23675 -12.15755 -12.03365 -11.90466 -11.77413 -11.70252 -11.59276 -11.43801 -11.32491 -11.10998 -10.60757 -10.38504 -9.83413 -8.38684 -7.66430 -5.36632 0.70601 1.46125 1.52520 1.55589 1.57661 2.37241 2.59156 3.39558 3.47385 3.74679 3.79848 4.02739 4.03715 4.20005 4.31891 4.35444 4.43903 4.47945 4.63181 4.66430 4.70326 4.77440 4.81901 4.91988 4.96675 4.98588 5.02540 5.03687 5.14534 5.19723 5.22447 5.26576 5.34039 5.35147 5.44345 5.53306 5.56195 5.69094 5.75819 5.78894 5.91272 6.64098 7.32087 7.48329 7.97499 8.53203 9.27208 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.010799 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.478124 B = 2592.298815 C = 4127.274469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C -0.035 4.035 4 O 0.072 5.928 5 N -0.402 5.402 6 C 0.016 3.984 7 C -0.066 4.066 8 C -0.201 4.201 9 C 0.221 3.779 10 N -0.576 5.576 11 C -0.225 4.225 12 H 0.043 0.957 13 C -0.011 4.011 14 N -0.915 5.915 15 Si 0.919 3.081 16 H -0.257 1.257 17 H -0.299 1.299 18 H -0.292 1.292 19 C 0.166 3.834 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.125 4.125 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.250 0.750 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 6.198 -2.986 6.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 C -0.099 4.099 4 O 0.011 5.989 5 N -0.112 5.112 6 C -0.142 4.142 7 C -0.124 4.124 8 C -0.207 4.207 9 C 0.094 3.906 10 N -0.295 5.295 11 C -0.356 4.356 12 H 0.061 0.939 13 C -0.208 4.208 14 N -0.559 5.559 15 Si 0.749 3.251 16 H -0.182 1.182 17 H -0.225 1.225 18 H -0.219 1.219 19 C 0.060 3.940 20 C -0.166 4.166 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.164 4.164 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.518 6.857 -3.888 7.900 hybrid contribution -0.761 -1.385 0.659 1.712 sum -0.243 5.472 -3.229 6.359 Atomic orbital electron populations 1.21858 0.93874 1.02402 1.02342 1.19964 0.96628 0.85804 1.03951 1.24505 1.02653 0.97108 0.85585 1.84637 1.62827 1.17513 1.33922 1.73677 1.19245 1.01212 1.17051 1.23869 1.01749 0.98609 0.90020 1.20203 1.01558 0.91765 0.98855 1.22505 1.04621 0.93278 1.00301 1.19146 0.87233 1.01783 0.82447 1.43918 1.11487 1.08821 1.65240 1.18704 0.88076 0.90548 1.38283 0.93915 1.25527 0.97352 0.99954 0.97982 1.69964 1.22668 1.15861 1.47437 0.86160 0.80476 0.79331 0.79181 1.18189 1.22537 1.21856 1.21236 0.95903 0.85498 0.91378 1.22659 0.98331 0.98204 0.97447 1.22394 0.97737 0.98058 0.96805 1.22224 0.97227 1.00420 0.95276 1.22498 0.97338 0.98611 0.97993 0.92247 0.92341 0.91724 0.88356 0.89850 0.89910 0.89723 0.89825 0.89012 0.95080 0.94050 0.92283 0.93301 0.93274 0.90417 0.91827 0.90837 0.93616 0.92412 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.66 71.98 0.70 -4.44 16 2 C -0.03 -0.87 6.38 29.85 0.19 -0.68 16 3 C -0.03 -1.33 6.74 25.04 0.17 -1.16 16 4 O 0.07 2.79 11.20 71.68 0.80 3.60 16 5 N -0.40 -15.59 12.07 -49.56 -0.60 -16.18 16 6 C 0.02 0.60 7.33 43.58 0.32 0.92 16 7 C -0.07 -1.91 9.62 71.24 0.69 -1.22 16 8 C -0.20 -8.05 5.90 -19.73 -0.12 -8.16 16 9 C 0.22 9.62 5.50 85.63 0.47 10.09 16 10 N -0.58 -25.49 2.33 -678.32 -1.58 -27.07 16 11 C -0.23 -10.89 5.91 84.03 0.50 -10.39 16 12 H 0.04 2.18 7.35 -2.91 -0.02 2.16 16 13 C -0.01 -0.54 5.13 84.86 0.44 -0.10 16 14 N -0.91 -47.73 11.15 21.65 0.24 -47.49 16 15 Si 0.92 40.56 29.33 68.60 2.01 42.58 16 16 H -0.26 -10.55 6.30 99.48 0.63 -9.92 16 17 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 C 0.17 6.34 3.42 45.72 0.16 6.49 16 20 C -0.13 -4.73 6.41 31.69 0.20 -4.53 16 21 C -0.11 -3.28 6.91 31.91 0.22 -3.06 16 22 C -0.11 -3.49 6.83 31.67 0.22 -3.27 16 23 C -0.12 -4.38 6.22 31.32 0.19 -4.19 16 24 H 0.06 2.45 6.21 -2.38 -0.01 2.43 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 2.11 7.51 -2.39 -0.02 2.09 16 27 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 28 H 0.08 3.18 7.23 -2.39 -0.02 3.16 16 29 H 0.08 2.25 7.83 -2.38 -0.02 2.24 16 30 H 0.08 2.30 7.65 -2.39 -0.02 2.29 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 4.49 4.55 -2.38 -0.01 4.48 16 33 H 0.03 1.33 7.67 -2.38 -0.02 1.31 16 34 H 0.25 12.90 8.32 -92.71 -0.77 12.13 16 35 H 0.06 2.11 6.92 -2.39 -0.02 2.09 16 36 H 0.05 2.18 6.90 -2.39 -0.02 2.16 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.81 7.85 -2.39 -0.02 1.80 16 43 H 0.04 1.50 7.21 -2.39 -0.02 1.49 16 Total: -1.00 -54.46 336.87 6.12 -48.34 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.91 Total: 19.94 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 4.34 Total: -23.70 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -1.94 Total: -90.75 kcal Atomic # 8 Polarization: 2.79 SS G_CDS: 0.80 Total: 3.60 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.01 Total: 42.58 kcal Total: -54.46 6.12 -48.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929686010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.838 kcal (2) G-P(sol) polarization free energy of solvation -54.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds