Wall clock time and date at job start Tue Mar 31 2020 00:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47378 * 2 1 4 4 O 1.34046 * 126.77459 * 270.00714 * 3 2 1 5 5 N 1.20921 * 111.56489 * 180.02562 * 4 3 2 6 6 C 1.30177 * 111.60408 * 359.73813 * 5 4 3 7 7 C 1.50706 * 126.80168 * 180.25471 * 6 5 4 8 8 C 1.35441 * 126.77866 * 90.00117 * 3 2 1 9 9 C 1.50706 * 128.00726 * 359.96758 * 8 3 2 10 10 N 1.46904 * 109.47125 * 89.99802 * 9 8 3 11 11 C 1.46849 * 110.99841 * 66.05087 * 10 9 8 12 12 C 1.53036 * 109.52091 * 174.16318 * 11 10 9 13 13 C 1.53120 * 109.28022 * 59.17416 * 12 11 10 14 14 C 1.53111 * 109.16044 * 302.34587 * 13 12 11 15 15 H 1.09001 * 109.50475 * 297.67164 * 14 13 12 16 16 C 1.50704 * 109.50245 * 177.59431 * 14 13 12 17 17 H 1.07995 * 120.00165 * 245.43327 * 16 14 13 18 18 C 1.37881 * 119.99712 * 65.43400 * 16 14 13 19 19 N 1.31513 * 119.99952 * 9.57091 * 18 16 14 20 20 Si 1.86802 * 119.99959 * 189.56294 * 18 16 14 21 21 H 1.48498 * 109.46762 * 94.99312 * 20 18 16 22 22 H 1.48499 * 109.47057 * 214.99502 * 20 18 16 23 23 H 1.48498 * 109.47144 * 334.99468 * 20 18 16 24 24 C 1.46844 * 110.99874 * 301.84045 * 10 9 8 25 25 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46448 * 299.99892 * 1 2 3 27 27 H 1.08993 * 109.47191 * 59.99442 * 1 2 3 28 28 H 1.09003 * 109.46908 * 240.00348 * 2 1 3 29 29 H 1.09004 * 109.47524 * 120.00234 * 2 1 3 30 30 H 1.09004 * 109.47124 * 270.16718 * 7 6 5 31 31 H 1.09000 * 109.46666 * 30.16712 * 7 6 5 32 32 H 1.08997 * 109.46958 * 150.16801 * 7 6 5 33 33 H 1.08998 * 109.46826 * 330.00038 * 9 8 3 34 34 H 1.08995 * 109.46922 * 210.00137 * 9 8 3 35 35 H 1.09004 * 109.46019 * 294.17512 * 11 10 9 36 36 H 1.08996 * 109.46436 * 54.13923 * 11 10 9 37 37 H 1.08999 * 109.50017 * 179.11829 * 12 11 10 38 38 H 1.09001 * 109.49804 * 299.23115 * 12 11 10 39 39 H 1.09003 * 109.52118 * 62.25308 * 13 12 11 40 40 H 1.09005 * 109.51743 * 182.43964 * 13 12 11 41 41 H 0.97001 * 119.99835 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.45977 * 305.84973 * 24 10 9 43 43 H 1.08993 * 109.46516 * 65.82119 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2998 2.1774 -1.0737 5 7 2.6893 3.2773 -0.7565 6 6 2.7330 3.4157 0.5372 7 6 3.1602 4.6432 1.3000 8 6 2.3028 2.1853 1.0848 9 6 2.1703 1.8127 2.5391 10 7 3.4328 1.2292 3.0120 11 6 4.5096 2.2277 3.0040 12 6 5.7676 1.6283 3.6366 13 6 6.1901 0.3881 2.8442 14 6 5.0339 -0.6154 2.8272 15 1 4.8125 -0.9329 3.8461 16 6 5.4202 -1.8141 1.9995 17 1 4.8950 -2.0276 1.0803 18 6 6.4442 -2.6382 2.4158 19 7 6.9574 -2.4934 3.6180 20 14 7.1025 -3.9605 1.2723 21 1 8.2901 -3.4416 0.5474 22 1 7.4898 -5.1539 2.0666 23 1 6.0509 -4.3372 0.2938 24 6 3.7972 0.0490 2.2179 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 4.2336 4.6008 1.4849 31 1 2.9271 5.5334 0.7157 32 1 2.6290 4.6833 2.2509 33 1 1.3674 1.0848 2.6559 34 1 1.9406 2.7039 3.1230 35 1 4.7245 2.5218 1.9766 36 1 4.1978 3.1027 3.5743 37 1 6.5712 2.3645 3.6163 38 1 5.5571 1.3468 4.6684 39 1 6.4381 0.6757 1.8225 40 1 7.0606 -0.0670 3.3169 41 1 7.6775 -3.0734 3.9110 42 1 2.9679 -0.6585 2.2174 43 1 4.0154 0.3532 1.1943 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930922386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:29 Heat of formation + Delta-G solvation = 42.075637 kcal Electronic energy + Delta-G solvation = -23172.070048 eV Core-core repulsion = 20026.683426 eV Total energy + Delta-G solvation = -3145.386622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.74974 -38.60971 -35.30450 -34.53449 -33.30886 -31.80960 -29.99222 -29.83603 -28.61901 -26.50248 -24.93338 -23.76289 -22.80380 -21.44353 -20.87445 -19.78293 -18.51918 -17.46359 -16.82319 -16.34337 -15.18944 -14.84291 -14.69137 -14.35898 -14.24506 -13.65878 -13.33537 -13.20325 -13.08922 -12.90029 -12.56491 -12.50578 -12.32415 -12.12704 -11.87174 -11.56507 -11.34022 -11.27940 -10.96565 -10.77236 -10.62686 -10.54609 -10.15328 -9.91705 -9.76698 -9.51259 -9.11787 -8.85573 -8.76123 -8.30889 -7.79562 -6.01703 -4.03226 1.64042 2.35582 3.26808 3.30099 3.37807 3.39956 4.30101 4.39939 4.52573 4.65487 4.91037 5.03381 5.16041 5.21269 5.30744 5.35129 5.46186 5.56168 5.62653 5.69634 5.75291 5.80361 5.84720 5.90495 5.94715 6.03489 6.06072 6.13772 6.23972 6.31695 6.37732 6.47223 6.65582 6.69884 6.90995 7.16150 7.28982 7.58572 7.70892 7.74608 7.98946 8.09279 8.44754 8.45758 9.00873 9.59924 11.07469 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.006121 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.442471 B = 4573.079086 C = 5373.691743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.012 4.012 4 O 0.091 5.909 5 N -0.375 5.375 6 C 0.025 3.975 7 C -0.075 4.075 8 C -0.227 4.227 9 C 0.129 3.871 10 N -0.524 5.524 11 C 0.062 3.938 12 C -0.118 4.118 13 C -0.105 4.105 14 C 0.053 3.947 15 H 0.041 0.959 16 C -0.517 4.517 17 H 0.053 0.947 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.884 3.116 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.065 3.935 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 9.496 -2.877 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.077 4.077 4 O 0.027 5.973 5 N -0.081 5.081 6 C -0.134 4.134 7 C -0.132 4.132 8 C -0.233 4.233 9 C 0.000 4.000 10 N -0.246 5.246 11 C -0.066 4.066 12 C -0.156 4.156 13 C -0.144 4.144 14 C 0.035 3.965 15 H 0.060 0.940 16 C -0.556 4.556 17 H 0.071 0.929 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.712 3.288 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.061 4.061 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.282 10.064 -3.282 14.757 hybrid contribution 0.616 -0.727 -0.876 1.294 sum -9.666 9.337 -4.158 14.068 Atomic orbital electron populations 1.21748 0.93698 1.02599 1.02283 1.20421 0.96355 0.86714 1.05957 1.24324 1.01089 0.96568 0.85673 1.84757 1.61617 1.17679 1.33210 1.73785 1.18108 1.00007 1.16248 1.23390 1.02043 0.97822 0.90117 1.20203 1.02195 0.92047 0.98766 1.21934 1.08165 0.93604 0.99589 1.20641 0.94401 0.99605 0.85353 1.62448 1.02098 1.07237 1.52832 1.22082 0.92285 0.93782 0.98453 1.21676 0.94851 0.98474 1.00627 1.21592 1.01890 0.93813 0.97065 1.18682 0.88395 0.92016 0.97453 0.94035 1.21093 1.17454 1.09508 1.07496 0.92879 1.24912 0.96917 0.97016 0.94678 1.69973 1.26354 1.39344 1.16654 0.86708 0.79446 0.81503 0.81135 1.20815 1.21278 1.19881 1.22450 0.99851 0.89646 0.94170 0.91228 0.92234 0.92514 0.89407 0.87207 0.90122 0.90951 0.90164 0.89835 0.90256 0.95558 0.92354 0.93558 0.91863 0.95116 0.90901 0.93060 0.92049 0.95967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.90 37.16 0.37 -1.07 16 2 C -0.06 -0.71 6.00 -27.88 -0.17 -0.88 16 3 C -0.01 -0.18 5.72 -35.31 -0.20 -0.38 16 4 O 0.09 1.49 11.20 17.16 0.19 1.68 16 5 N -0.37 -6.28 12.07 33.42 0.40 -5.88 16 6 C 0.03 0.38 6.48 -82.10 -0.53 -0.15 16 7 C -0.07 -0.87 9.54 36.01 0.34 -0.53 16 8 C -0.23 -3.38 4.09 -104.42 -0.43 -3.81 16 9 C 0.13 1.83 5.62 -4.97 -0.03 1.80 16 10 N -0.52 -9.13 4.86 -236.11 -1.15 -10.27 16 11 C 0.06 1.05 4.38 -3.83 -0.02 1.03 16 12 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 13 C -0.11 -2.45 5.09 -26.61 -0.14 -2.59 16 14 C 0.05 1.30 2.13 -91.69 -0.20 1.10 16 15 H 0.04 1.13 8.09 -51.93 -0.42 0.71 16 16 C -0.52 -13.87 8.48 -34.44 -0.29 -14.16 16 17 H 0.05 1.40 7.77 -52.49 -0.41 1.00 16 18 C 0.07 1.83 5.22 -17.82 -0.09 1.73 16 19 N -0.89 -25.19 12.18 55.43 0.68 -24.51 16 20 Si 0.88 21.08 29.55 -169.99 -5.02 16.06 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.07 1.32 3.14 -3.84 -0.01 1.31 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.11 1.50 4.94 -51.93 -0.26 1.25 16 30 H 0.08 0.94 7.44 -51.93 -0.39 0.55 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.79 7.65 -51.93 -0.40 0.39 16 33 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.08 0.98 7.57 -51.93 -0.39 0.59 16 35 H 0.03 0.47 5.97 -51.93 -0.31 0.16 16 36 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.89 6.98 -51.93 -0.36 1.52 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 1.19 6.18 -51.93 -0.32 0.87 16 43 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -29.40 331.67 -8.40 -37.80 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.94 Total: -0.87 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -1.55 Total: -19.01 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.07 Total: -40.66 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.19 Total: 1.68 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.40 -8.40 -37.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930922386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.872 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds