Wall clock time and date at job start Tue Mar 31 2020 00:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47378 * 2 1 4 4 O 1.34046 * 126.77459 * 270.00714 * 3 2 1 5 5 N 1.20921 * 111.56489 * 180.02562 * 4 3 2 6 6 C 1.30177 * 111.60408 * 359.73813 * 5 4 3 7 7 C 1.50706 * 126.80168 * 180.25471 * 6 5 4 8 8 C 1.35441 * 126.77866 * 90.00117 * 3 2 1 9 9 C 1.50706 * 128.00726 * 359.96758 * 8 3 2 10 10 N 1.46904 * 109.47125 * 89.99802 * 9 8 3 11 11 C 1.46849 * 110.99841 * 66.05087 * 10 9 8 12 12 C 1.53036 * 109.52091 * 174.16318 * 11 10 9 13 13 C 1.53120 * 109.28022 * 59.17416 * 12 11 10 14 14 C 1.53111 * 109.16044 * 302.34587 * 13 12 11 15 15 H 1.09001 * 109.50475 * 297.67164 * 14 13 12 16 16 C 1.50704 * 109.50245 * 177.59431 * 14 13 12 17 17 H 1.07995 * 120.00165 * 245.43327 * 16 14 13 18 18 C 1.37881 * 119.99712 * 65.43400 * 16 14 13 19 19 N 1.31513 * 119.99952 * 9.57091 * 18 16 14 20 20 Si 1.86802 * 119.99959 * 189.56294 * 18 16 14 21 21 H 1.48498 * 109.46762 * 94.99312 * 20 18 16 22 22 H 1.48499 * 109.47057 * 214.99502 * 20 18 16 23 23 H 1.48498 * 109.47144 * 334.99468 * 20 18 16 24 24 C 1.46844 * 110.99874 * 301.84045 * 10 9 8 25 25 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46448 * 299.99892 * 1 2 3 27 27 H 1.08993 * 109.47191 * 59.99442 * 1 2 3 28 28 H 1.09003 * 109.46908 * 240.00348 * 2 1 3 29 29 H 1.09004 * 109.47524 * 120.00234 * 2 1 3 30 30 H 1.09004 * 109.47124 * 270.16718 * 7 6 5 31 31 H 1.09000 * 109.46666 * 30.16712 * 7 6 5 32 32 H 1.08997 * 109.46958 * 150.16801 * 7 6 5 33 33 H 1.08998 * 109.46826 * 330.00038 * 9 8 3 34 34 H 1.08995 * 109.46922 * 210.00137 * 9 8 3 35 35 H 1.09004 * 109.46019 * 294.17512 * 11 10 9 36 36 H 1.08996 * 109.46436 * 54.13923 * 11 10 9 37 37 H 1.08999 * 109.50017 * 179.11829 * 12 11 10 38 38 H 1.09001 * 109.49804 * 299.23115 * 12 11 10 39 39 H 1.09003 * 109.52118 * 62.25308 * 13 12 11 40 40 H 1.09005 * 109.51743 * 182.43964 * 13 12 11 41 41 H 0.97001 * 119.99835 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.45977 * 305.84973 * 24 10 9 43 43 H 1.08993 * 109.46516 * 65.82119 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2998 2.1774 -1.0737 5 7 2.6893 3.2773 -0.7565 6 6 2.7330 3.4157 0.5372 7 6 3.1602 4.6432 1.3000 8 6 2.3028 2.1853 1.0848 9 6 2.1703 1.8127 2.5391 10 7 3.4328 1.2292 3.0120 11 6 4.5096 2.2277 3.0040 12 6 5.7676 1.6283 3.6366 13 6 6.1901 0.3881 2.8442 14 6 5.0339 -0.6154 2.8272 15 1 4.8125 -0.9329 3.8461 16 6 5.4202 -1.8141 1.9995 17 1 4.8950 -2.0276 1.0803 18 6 6.4442 -2.6382 2.4158 19 7 6.9574 -2.4934 3.6180 20 14 7.1025 -3.9605 1.2723 21 1 8.2901 -3.4416 0.5474 22 1 7.4898 -5.1539 2.0666 23 1 6.0509 -4.3372 0.2938 24 6 3.7972 0.0490 2.2179 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 4.2336 4.6008 1.4849 31 1 2.9271 5.5334 0.7157 32 1 2.6290 4.6833 2.2509 33 1 1.3674 1.0848 2.6559 34 1 1.9406 2.7039 3.1230 35 1 4.7245 2.5218 1.9766 36 1 4.1978 3.1027 3.5743 37 1 6.5712 2.3645 3.6163 38 1 5.5571 1.3468 4.6684 39 1 6.4381 0.6757 1.8225 40 1 7.0606 -0.0670 3.3169 41 1 7.6775 -3.0734 3.9110 42 1 2.9679 -0.6585 2.2174 43 1 4.0154 0.3532 1.1943 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930922386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:29 Heat of formation + Delta-G solvation = 24.806639 kcal Electronic energy + Delta-G solvation = -23172.818887 eV Core-core repulsion = 20026.683426 eV Total energy + Delta-G solvation = -3146.135461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.90450 -40.07904 -36.69119 -35.58005 -34.98949 -33.38821 -31.70205 -31.00707 -29.64358 -27.80533 -26.85388 -24.75586 -24.24525 -23.07839 -22.21724 -20.95369 -20.11199 -18.70336 -18.37560 -17.92774 -16.83346 -16.21726 -15.93084 -15.72701 -15.66497 -14.94999 -14.73060 -14.40581 -14.31887 -14.14495 -13.99726 -13.74981 -13.66219 -13.32582 -13.21078 -12.93442 -12.84598 -12.61700 -12.49288 -12.31813 -12.11781 -11.94977 -11.70727 -11.59953 -11.40053 -10.95492 -10.73976 -10.65083 -10.41682 -10.09404 -9.21845 -8.11972 -6.19660 0.49264 1.23330 1.38949 1.41379 1.50343 2.16146 2.42574 3.17172 3.18941 3.29941 3.52558 3.82674 4.01192 4.18468 4.20314 4.26102 4.31015 4.38636 4.43035 4.59298 4.62828 4.65436 4.69843 4.79489 4.83711 4.86140 4.89695 4.96135 4.99809 5.03350 5.10298 5.10405 5.20378 5.27062 5.36279 5.40464 5.45414 5.64363 5.94913 6.04401 6.16118 6.32127 6.46710 6.93424 7.29620 7.46765 8.96838 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.006121 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.442471 B = 4573.079086 C = 5373.691743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.015 4.015 4 O 0.072 5.928 5 N -0.403 5.403 6 C 0.026 3.974 7 C -0.076 4.076 8 C -0.237 4.237 9 C 0.132 3.868 10 N -0.530 5.530 11 C 0.068 3.932 12 C -0.113 4.113 13 C -0.099 4.099 14 C 0.051 3.949 15 H 0.005 0.995 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.019 3.981 19 N -0.916 5.916 20 Si 0.943 3.057 21 H -0.281 1.281 22 H -0.283 1.283 23 H -0.265 1.265 24 C 0.086 3.914 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.019 0.981 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.037 0.963 41 H 0.260 0.740 42 H 0.066 0.934 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 10.549 -2.855 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 C -0.079 4.079 4 O 0.012 5.988 5 N -0.113 5.113 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.243 4.243 9 C 0.004 3.996 10 N -0.253 5.253 11 C -0.060 4.060 12 C -0.151 4.151 13 C -0.138 4.138 14 C 0.032 3.968 15 H 0.024 0.976 16 C -0.572 4.572 17 H 0.070 0.930 18 C -0.180 4.180 19 N -0.555 5.555 20 Si 0.769 3.231 21 H -0.208 1.208 22 H -0.209 1.209 23 H -0.189 1.189 24 C -0.041 4.041 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.037 0.963 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -11.601 11.105 -3.275 16.390 hybrid contribution 1.018 -1.049 -0.868 1.700 sum -10.582 10.056 -4.143 15.174 Atomic orbital electron populations 1.21719 0.91402 1.03789 1.02682 1.20497 0.98262 0.85386 1.05369 1.24802 1.00318 0.97209 0.85621 1.84725 1.62233 1.17949 1.33866 1.73780 1.19677 1.00464 1.17419 1.23978 1.00661 0.98887 0.89799 1.20376 1.02496 0.90902 0.99570 1.22060 1.08684 0.93719 0.99834 1.20756 0.92710 1.00940 0.85164 1.62379 1.03512 1.06889 1.52479 1.22072 0.91098 0.94468 0.98325 1.21604 0.96932 0.96993 0.99526 1.21420 1.00243 0.95503 0.96602 1.18602 0.90792 0.92126 0.95252 0.97630 1.21486 1.17516 1.10518 1.07643 0.93025 1.25644 0.97243 0.99257 0.95905 1.70091 1.26836 1.40393 1.18146 0.85767 0.78832 0.79044 0.79414 1.20753 1.20865 1.18898 1.22047 0.97957 0.90877 0.93239 0.89655 0.91722 0.92199 0.89310 0.88352 0.89925 0.89956 0.87795 0.88666 0.87411 0.96322 0.88566 0.91417 0.92480 0.96368 0.94390 0.93117 0.91577 0.97224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.90 71.98 0.71 -1.75 16 2 C -0.06 -1.38 6.00 29.85 0.18 -1.20 16 3 C -0.02 -0.43 5.72 25.04 0.14 -0.29 16 4 O 0.07 2.33 11.20 71.58 0.80 3.13 16 5 N -0.40 -13.16 12.07 -49.55 -0.60 -13.76 16 6 C 0.03 0.73 6.48 43.58 0.28 1.02 16 7 C -0.08 -1.53 9.54 71.24 0.68 -0.85 16 8 C -0.24 -6.58 4.09 -19.74 -0.08 -6.66 16 9 C 0.13 3.34 5.62 85.56 0.48 3.82 16 10 N -0.53 -17.42 4.86 -900.92 -4.38 -21.80 16 11 C 0.07 2.13 4.38 86.32 0.38 2.51 16 12 C -0.11 -4.18 6.09 30.65 0.19 -3.99 16 13 C -0.10 -4.72 5.09 30.67 0.16 -4.56 16 14 C 0.05 2.55 2.13 -11.49 -0.02 2.52 16 15 H 0.01 0.31 8.09 -2.39 -0.02 0.29 16 16 C -0.53 -29.20 8.48 25.60 0.22 -28.98 16 17 H 0.05 2.77 7.77 -2.91 -0.02 2.74 16 18 C 0.02 1.04 5.22 84.66 0.44 1.48 16 19 N -0.92 -53.50 12.18 21.45 0.26 -53.24 16 20 Si 0.94 43.72 29.55 68.60 2.03 45.75 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.09 3.44 3.14 86.33 0.27 3.71 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.10 2.61 4.94 -2.38 -0.01 2.60 16 30 H 0.08 1.67 7.44 -2.38 -0.02 1.65 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.58 7.65 -2.39 -0.02 1.56 16 33 H 0.10 2.20 8.08 -2.39 -0.02 2.18 16 34 H 0.11 2.16 7.57 -2.39 -0.02 2.14 16 35 H 0.02 0.62 5.97 -2.38 -0.01 0.61 16 36 H 0.10 2.34 8.06 -2.39 -0.02 2.33 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.04 2.03 6.98 -2.38 -0.02 2.01 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.69 16 42 H 0.07 2.55 6.18 -2.38 -0.01 2.53 16 43 H 0.01 0.41 6.43 -2.39 -0.02 0.39 16 Total: -1.00 -64.95 331.67 3.13 -61.82 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.99 Total: 11.33 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.02 Total: -33.23 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -4.71 Total: -88.80 kcal Atomic # 8 Polarization: 2.33 SS G_CDS: 0.80 Total: 3.13 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.95 3.13 -61.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930922386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.630 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds