Wall clock time and date at job start Tue Mar 31 2020 00:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46958 * 2 1 4 4 C 1.50696 * 109.47687 * 240.00002 * 2 1 3 5 5 O 1.21280 * 120.00300 * 240.00549 * 4 2 1 6 6 N 1.34777 * 120.00089 * 59.99740 * 4 2 1 7 7 C 1.46498 * 120.00139 * 180.02562 * 6 4 2 8 8 H 1.08992 * 115.51775 * 9.41026 * 7 6 4 9 9 C 1.53008 * 117.43993 * 224.00240 * 7 6 4 10 10 H 1.09003 * 119.53519 * 4.11221 * 9 7 6 11 11 C 1.54436 * 118.09216 * 160.74092 * 9 7 6 12 12 N 1.48142 * 104.55635 * 87.29205 * 11 9 7 13 13 C 1.36936 * 127.83651 * 140.40385 * 12 11 9 14 14 H 1.07999 * 120.00379 * 195.61203 * 13 12 11 15 15 C 1.38814 * 120.00258 * 15.61544 * 13 12 11 16 16 N 1.31627 * 119.99780 * 9.10788 * 15 13 12 17 17 Si 1.86795 * 120.00435 * 189.11363 * 15 13 12 18 18 H 1.48500 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47378 * 119.99609 * 17 15 13 20 20 H 1.48504 * 109.47103 * 239.99663 * 17 15 13 21 21 C 1.48140 * 104.32751 * 320.40194 * 12 11 9 22 22 C 1.53001 * 117.44356 * 154.83623 * 7 6 4 23 23 H 1.09000 * 119.53749 * 354.27724 * 22 7 6 24 24 C 1.53002 * 109.46865 * 119.99659 * 2 1 3 25 25 C 1.53000 * 117.51836 * 231.28289 * 24 2 1 26 26 C 1.53002 * 117.50165 * 299.91511 * 24 2 1 27 27 H 1.08992 * 109.47632 * 299.99783 * 1 2 3 28 28 H 1.09004 * 109.46897 * 60.00657 * 1 2 3 29 29 H 1.08999 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47458 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47526 * 299.99715 * 3 2 1 32 32 H 1.09006 * 109.47105 * 60.00148 * 3 2 1 33 33 H 0.97000 * 119.99841 * 0.02562 * 6 4 2 34 34 H 1.09003 * 110.44539 * 328.52347 * 11 9 7 35 35 H 1.08999 * 110.52565 * 206.10333 * 11 9 7 36 36 H 0.97000 * 119.99793 * 180.02562 * 16 15 13 37 37 H 1.09010 * 110.40514 * 280.80206 * 21 12 11 38 38 H 1.08998 * 110.40996 * 158.37257 * 21 12 11 39 39 H 1.08999 * 115.54898 * 85.58625 * 24 2 1 40 40 H 1.08996 * 117.50138 * 214.96929 * 25 24 2 41 41 H 1.08997 * 117.50121 * 0.02562 * 25 24 2 42 42 H 1.08997 * 117.49573 * 359.97438 * 26 24 2 43 43 H 1.08998 * 117.49427 * 144.97090 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0325 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7069 -0.2500 -2.4545 7 6 2.1949 -0.9409 -3.6507 8 1 2.6772 -1.9021 -3.4737 9 6 2.7399 -0.0777 -4.7905 10 1 2.8134 1.0019 -4.6591 11 6 3.6549 -0.7493 -5.8378 12 7 2.7226 -1.2946 -6.8516 13 6 2.8744 -1.3059 -8.2125 14 1 2.0241 -1.5009 -8.8492 15 6 4.1212 -1.0666 -8.7739 16 7 5.1884 -1.0072 -8.0056 17 14 4.2847 -0.8289 -10.6194 18 1 2.9467 -0.9422 -11.2535 19 1 4.8523 0.5150 -10.8971 20 1 5.1851 -1.8710 -11.1749 21 6 1.5888 -1.8251 -6.0594 22 6 1.3791 -0.7872 -4.9359 23 1 0.4262 -0.2587 -4.9076 24 6 2.0399 -0.7212 1.2493 25 6 3.0757 0.0039 2.1109 26 6 1.6373 -0.1483 2.6097 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.1495 0.5389 -2.5436 34 1 4.2313 -1.5532 -5.3801 35 1 4.3212 -0.0148 -6.2901 36 1 6.0596 -0.8396 -8.3978 37 1 1.8426 -2.7972 -5.6363 38 1 0.6949 -1.9008 -6.6785 39 1 2.1253 -1.8046 1.1648 40 1 3.8424 -0.6024 2.5932 41 1 3.3938 0.9952 1.7880 42 1 1.0095 0.7427 2.6146 43 1 1.4573 -0.8548 3.4199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961526829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:22 Heat of formation + Delta-G solvation = 43.020512 kcal Electronic energy + Delta-G solvation = -21833.563031 eV Core-core repulsion = 18688.217382 eV Total energy + Delta-G solvation = -3145.345649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47741 -38.80628 -37.43500 -34.54740 -33.49382 -32.17701 -30.10157 -27.75059 -27.14237 -25.74096 -24.67558 -22.47744 -22.37904 -20.87625 -20.38074 -19.28528 -18.66333 -17.25923 -16.83225 -16.40877 -15.61456 -15.05696 -14.69144 -14.59534 -14.20976 -13.62770 -13.27803 -13.06244 -12.95779 -12.73737 -12.48895 -12.38791 -12.19049 -11.79870 -11.53272 -11.44220 -11.32276 -11.00746 -10.97783 -10.84748 -10.52487 -10.39004 -10.18710 -10.16622 -10.13648 -9.73836 -9.56508 -9.16751 -8.73946 -8.29276 -6.86424 -5.79371 -3.13900 2.69224 3.09977 3.38077 3.43824 3.46491 3.66855 4.30816 4.31964 4.45995 4.49717 4.67337 4.81037 4.86416 5.01466 5.16462 5.20534 5.29133 5.37575 5.40608 5.42201 5.47716 5.53150 5.60099 5.63444 5.70703 5.84316 5.88620 5.90849 5.92752 5.94859 6.13808 6.18016 6.28038 6.52848 6.68879 6.84462 6.89212 7.36914 7.54649 7.62772 7.72310 8.20828 8.34073 9.11046 9.73821 10.50927 11.34926 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043669 B = 0.003248 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.037030 B = 8619.509397 C = 8823.266965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C -0.145 4.145 4 C 0.526 3.474 5 O -0.534 6.534 6 N -0.696 5.696 7 C 0.096 3.904 8 H 0.130 0.870 9 C -0.178 4.178 10 H 0.101 0.899 11 C 0.185 3.815 12 N -0.593 5.593 13 C -0.227 4.227 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.914 5.914 17 Si 0.913 3.087 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.155 3.845 22 C -0.184 4.184 23 H 0.103 0.897 24 C -0.129 4.129 25 C -0.181 4.181 26 C -0.179 4.179 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.254 0.746 37 H 0.027 0.973 38 H 0.052 0.948 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.468 5.709 18.864 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 C -0.202 4.202 4 C 0.312 3.688 5 O -0.410 6.410 6 N -0.345 5.345 7 C -0.010 4.010 8 H 0.148 0.852 9 C -0.200 4.200 10 H 0.119 0.881 11 C 0.059 3.941 12 N -0.317 5.317 13 C -0.355 4.355 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.560 5.560 17 Si 0.743 3.257 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.029 3.971 22 C -0.205 4.205 23 H 0.121 0.879 24 C -0.148 4.148 25 C -0.218 4.218 26 C -0.216 4.216 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.231 0.769 34 H 0.044 0.956 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.783 4.998 18.713 21.268 hybrid contribution -0.173 0.639 -0.976 1.180 sum -8.956 5.637 17.737 20.654 Atomic orbital electron populations 1.21832 0.92244 1.02924 1.02519 1.20251 0.96942 0.95909 0.92277 1.22004 1.02130 0.93524 1.02589 1.20356 0.79930 0.84377 0.84107 1.90691 1.37463 1.26317 1.86534 1.45376 1.52837 1.31281 1.04973 1.21839 1.01442 0.98090 0.79636 0.85195 1.24706 0.98059 0.98355 0.98875 0.88119 1.21060 0.90621 0.96452 0.85961 1.45184 1.18528 1.66224 1.01726 1.19037 0.93771 1.43066 0.79656 0.90478 1.24915 0.95095 1.02174 0.98135 1.69916 0.97942 1.54498 1.33665 0.86037 0.77589 0.77452 0.84604 1.20372 1.21630 1.21666 1.21123 0.92468 0.93073 0.90477 1.24258 0.95525 1.04271 0.96433 0.87932 1.22047 1.03484 0.99922 0.89306 1.23131 0.92457 1.02443 1.03761 1.22971 0.98348 1.03132 0.97128 0.91355 0.92070 0.91815 0.91413 0.91959 0.91349 0.76914 0.95602 0.89102 0.93574 0.95559 0.92991 0.86651 0.88890 0.88211 0.88847 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.21 37.16 0.31 -0.81 16 2 C -0.05 -0.51 0.72 -155.66 -0.11 -0.62 16 3 C -0.15 -1.22 6.97 37.16 0.26 -0.96 16 4 C 0.53 7.50 6.48 -10.99 -0.07 7.42 16 5 O -0.53 -9.90 15.21 5.56 0.08 -9.82 16 6 N -0.70 -9.45 5.35 -53.81 -0.29 -9.73 16 7 C 0.10 1.64 5.98 -67.93 -0.41 1.24 16 8 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 9 C -0.18 -3.43 7.05 -89.26 -0.63 -4.06 16 10 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 11 C 0.19 4.53 5.71 -2.39 -0.01 4.52 16 12 N -0.59 -15.34 3.38 -168.84 -0.57 -15.91 16 13 C -0.23 -6.36 10.35 -15.06 -0.16 -6.51 16 14 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 15 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 16 N -0.91 -26.99 10.86 55.49 0.60 -26.38 16 17 Si 0.91 21.98 29.56 -169.99 -5.03 16.95 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 C 0.16 3.29 7.04 -2.41 -0.02 3.28 16 22 C -0.18 -3.26 7.05 -89.29 -0.63 -3.89 16 23 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 24 C -0.13 -1.34 4.75 -90.62 -0.43 -1.77 16 25 C -0.18 -1.65 9.57 -26.73 -0.26 -1.91 16 26 C -0.18 -1.40 9.38 -26.73 -0.25 -1.65 16 27 H 0.07 0.44 7.29 -51.93 -0.38 0.06 16 28 H 0.06 0.43 7.57 -51.93 -0.39 0.04 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.64 6.97 -51.93 -0.36 0.27 16 31 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 32 H 0.07 0.46 7.07 -51.93 -0.37 0.09 16 33 H 0.40 4.25 7.66 -40.82 -0.31 3.93 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.12 1.44 7.47 -51.93 -0.39 1.05 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.84 5.85 -51.93 -0.30 0.54 16 42 H 0.09 0.62 7.07 -51.93 -0.37 0.25 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -32.01 340.08 -9.49 -41.50 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.92 Total: 4.25 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.50 Total: -5.98 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.26 Total: -52.03 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.01 -9.49 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961526829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.521 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds